Wall clock time and date at job start Tue Mar 31 2020 07:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46927 * 2 1 4 4 C 1.52996 * 109.47104 * 239.99502 * 2 1 3 5 5 O 1.45202 * 109.46758 * 119.99383 * 2 1 3 6 6 C 1.34639 * 117.00072 * 60.00793 * 5 2 1 7 7 O 1.21514 * 120.00077 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00071 * 179.97438 * 6 5 2 9 9 C 1.46497 * 119.99803 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46954 * 179.97438 * 9 8 6 11 11 C 1.38232 * 120.00190 * 90.00114 * 10 9 8 12 12 C 1.38237 * 120.00019 * 180.02562 * 11 10 9 13 13 C 1.38231 * 119.99929 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99766 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47151 * 90.00279 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27762 * 15 14 13 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 C 1.38233 * 120.00119 * 0.25187 * 13 12 11 24 24 C 1.38232 * 119.99735 * 359.49690 * 23 13 12 25 25 H 1.08999 * 109.47152 * 300.00201 * 1 2 3 26 26 H 1.08998 * 109.47041 * 60.00696 * 1 2 3 27 27 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46870 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46972 * 299.99512 * 3 2 1 30 30 H 1.08999 * 109.47368 * 59.99931 * 3 2 1 31 31 H 1.09001 * 109.47192 * 299.99924 * 4 2 1 32 32 H 1.08993 * 109.47109 * 60.00388 * 4 2 1 33 33 H 1.09005 * 109.47143 * 180.02562 * 4 2 1 34 34 H 0.97001 * 120.00262 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.47589 * 59.99693 * 9 8 6 36 36 H 1.09004 * 109.47274 * 299.99126 * 9 8 6 37 37 H 1.08005 * 119.99795 * 359.97438 * 11 10 9 38 38 H 1.08003 * 119.99517 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.47088 * 329.99418 * 14 13 12 40 40 H 1.09007 * 109.46560 * 209.99923 * 14 13 12 41 41 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.00409 * 179.72430 * 23 13 12 43 43 H 1.08010 * 120.00077 * 180.22689 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6523 -1.9722 1.3385 7 8 0.9510 -2.5095 0.5041 8 7 2.0680 -2.6656 2.4169 9 6 1.6740 -4.0667 2.5834 10 6 2.2661 -4.6067 3.8597 11 6 1.5609 -4.5085 5.0446 12 6 2.1043 -5.0034 6.2154 13 6 3.3527 -5.5970 6.2011 14 6 3.9453 -6.1360 7.4776 15 6 3.5401 -7.5772 7.6502 16 1 2.9156 -8.0549 6.9098 17 6 3.9616 -8.2839 8.7564 18 7 3.6035 -9.5401 8.9099 19 14 5.0413 -7.4575 10.0373 20 1 4.1853 -6.8276 11.0744 21 1 5.9220 -8.4714 10.6712 22 1 5.8751 -6.4164 9.3845 23 6 4.0598 -5.6910 5.0171 24 6 3.5142 -5.2008 3.8455 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2076 -2.1391 33 1 3.1300 -0.7217 -1.2489 34 1 2.6281 -2.2368 3.0828 35 1 2.0397 -4.6499 1.7384 36 1 0.5871 -4.1355 2.6292 37 1 0.5858 -4.0444 5.0557 38 1 1.5535 -4.9263 7.1412 39 1 3.5802 -5.5521 8.3226 40 1 5.0322 -6.0671 7.4309 41 1 3.9003 -10.0375 9.6879 42 1 5.0371 -6.1507 5.0068 43 1 4.0652 -5.2775 2.9196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:26 Heat of formation + Delta-G solvation = -92.240387 kcal Electronic energy + Delta-G solvation = -22336.888228 eV Core-core repulsion = 18959.732424 eV Total energy + Delta-G solvation = -3377.155804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78575 -40.36757 -38.40813 -36.34195 -35.30916 -34.79495 -33.24262 -31.75912 -30.22883 -28.32566 -28.26282 -26.99752 -24.29005 -23.52315 -23.03160 -21.55508 -21.02299 -19.28184 -18.97690 -17.69608 -17.30251 -17.06918 -16.39449 -16.33109 -15.98383 -15.83875 -15.35112 -15.28720 -14.70144 -14.39797 -14.25815 -14.15616 -14.05758 -13.43260 -13.32869 -13.26289 -13.03621 -12.90165 -12.84309 -12.83019 -12.48943 -12.39070 -12.28490 -11.93932 -11.75917 -11.68987 -11.50569 -11.35677 -11.11456 -10.79414 -10.21757 -9.74505 -9.40397 -8.30409 -6.35860 0.33422 0.58445 1.34147 1.36746 1.38492 1.50180 1.78527 2.34867 2.89984 3.03960 3.32293 3.69009 3.78918 3.83585 3.96787 3.98509 4.20278 4.29462 4.36389 4.51830 4.64045 4.65183 4.69299 4.79972 4.80219 4.82139 4.89061 4.91301 5.01762 5.03781 5.09277 5.17656 5.24508 5.31840 5.32137 5.39262 5.55431 5.56708 5.61364 5.65447 5.99495 6.13926 6.27170 6.42981 6.70818 7.27734 7.35430 8.86024 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.042092 B = 0.002453 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.052281 B =11412.505403 C =11586.552675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.698 5.698 9 C 0.195 3.805 10 C -0.129 4.129 11 C -0.091 4.091 12 C -0.138 4.138 13 C -0.051 4.051 14 C 0.017 3.983 15 C -0.520 4.520 16 H 0.028 0.972 17 C 0.006 3.994 18 N -0.949 5.949 19 Si 0.952 3.048 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.245 1.245 23 C -0.138 4.138 24 C -0.091 4.091 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.267 0.733 42 H 0.119 0.881 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 23.150 -17.500 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.400 3.600 7 O -0.484 6.484 8 N -0.357 5.357 9 C 0.073 3.927 10 C -0.130 4.130 11 C -0.109 4.109 12 C -0.156 4.156 13 C -0.051 4.051 14 C -0.020 4.020 15 C -0.558 4.558 16 H 0.046 0.954 17 C -0.191 4.191 18 N -0.589 5.589 19 Si 0.775 3.225 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.168 1.168 23 C -0.156 4.156 24 C -0.109 4.109 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.250 0.750 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.138 0.862 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.840 22.812 -17.866 29.114 hybrid contribution 0.511 -0.543 1.193 1.406 sum -2.330 22.268 -16.673 27.916 Atomic orbital electron populations 1.22474 0.93960 1.03698 1.03563 1.22420 0.94628 0.92698 0.81514 1.21889 1.02408 0.90719 1.04306 1.22473 1.01604 1.02253 0.97363 1.86325 1.71632 1.23094 1.47468 1.18231 0.78743 0.80819 0.82230 1.90894 1.42297 1.71026 1.44213 1.44869 1.55136 1.12344 1.23378 1.20003 0.99615 0.78678 0.94367 1.19661 0.95765 1.03126 0.94412 1.21188 0.99999 0.98409 0.91334 1.21162 0.95281 0.99932 0.99203 1.20264 0.94898 0.93864 0.96070 1.18704 0.96557 0.94308 0.92458 1.21147 1.31664 0.95835 1.07113 0.95409 1.26009 0.97464 0.95275 1.00361 1.70062 1.47518 1.10844 1.30501 0.85636 0.79228 0.78826 0.78859 1.19006 1.20969 1.16792 1.21159 1.00871 1.01077 0.92459 1.21188 0.94939 0.96874 0.97928 0.92027 0.89081 0.91932 0.91278 0.87925 0.91273 0.91935 0.89079 0.92024 0.74956 0.90262 0.90257 0.84044 0.86235 0.95109 0.94977 0.92371 0.86251 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.37 71.98 0.60 -2.36 16 2 C 0.12 2.07 1.13 -10.80 -0.01 2.05 16 3 C -0.14 -1.44 8.85 71.98 0.64 -0.80 16 4 C -0.18 -2.96 8.37 71.98 0.60 -2.36 16 5 O -0.37 -7.92 9.94 -55.49 -0.55 -8.47 16 6 C 0.65 15.51 8.06 129.79 1.05 16.56 16 7 O -0.59 -16.80 11.88 19.80 0.24 -16.57 16 8 N -0.70 -14.62 5.55 -594.60 -3.30 -17.92 16 9 C 0.20 4.27 5.80 85.64 0.50 4.77 16 10 C -0.13 -3.31 5.25 -19.87 -0.10 -3.41 16 11 C -0.09 -2.53 9.70 22.27 0.22 -2.31 16 12 C -0.14 -4.80 9.70 22.27 0.22 -4.59 16 13 C -0.05 -2.02 5.07 -19.87 -0.10 -2.12 16 14 C 0.02 0.78 4.17 29.10 0.12 0.90 16 15 C -0.52 -29.77 9.65 25.60 0.25 -29.52 16 16 H 0.03 1.79 7.98 -2.91 -0.02 1.76 16 17 C 0.01 0.34 5.47 84.65 0.46 0.80 16 18 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 19 Si 0.95 43.30 27.46 68.60 1.88 45.19 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.24 -10.23 6.55 99.48 0.65 -9.58 16 23 C -0.14 -4.80 9.70 22.27 0.22 -4.59 16 24 C -0.09 -2.53 9.70 22.27 0.22 -2.31 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.41 7.61 8.57 -92.71 -0.79 6.82 16 35 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.08 1.73 8.09 -2.38 -0.02 1.71 16 37 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.03 1.37 7.51 -2.39 -0.02 1.35 16 40 H 0.03 1.44 7.15 -2.38 -0.02 1.43 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -69.29 355.23 3.57 -65.72 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.15 Total: 20.26 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 4.86 Total: -29.28 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -3.00 Total: -76.83 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.32 Total: -25.04 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.19 kcal Total: -69.29 3.57 -65.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.525 kcal (2) G-P(sol) polarization free energy of solvation -69.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds