Wall clock time and date at job start Tue Mar 31 2020 07:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47048 * 2 1 4 4 H 1.09000 * 109.46929 * 54.65615 * 3 2 1 5 5 C 1.50699 * 109.46933 * 174.65719 * 3 2 1 6 6 H 1.07997 * 119.99844 * 120.00085 * 5 3 2 7 7 C 1.37873 * 120.00081 * 299.99942 * 5 3 2 8 8 N 1.31521 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00196 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46822 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47444 * 119.99675 * 9 7 5 12 12 H 1.48499 * 109.47171 * 240.00089 * 9 7 5 13 13 N 1.46895 * 109.46993 * 294.65741 * 3 2 1 14 14 C 1.46894 * 111.00209 * 154.03540 * 13 3 2 15 15 C 1.50697 * 109.47398 * 176.78857 * 14 13 3 16 16 C 1.38242 * 119.94407 * 259.97500 * 15 14 13 17 17 C 1.38666 * 120.06592 * 180.02562 * 16 15 14 18 18 C 1.39012 * 119.81629 * 359.84645 * 17 16 15 19 19 C 1.38665 * 119.82590 * 359.90703 * 18 17 16 20 20 C 1.38208 * 119.94327 * 80.00154 * 15 14 13 21 21 C 1.50707 * 119.94321 * 0.03828 * 20 15 14 22 22 O 1.36101 * 120.77991 * 180.23849 * 18 17 16 23 23 C 1.43183 * 116.68776 * 342.60288 * 22 18 17 24 24 C 1.53469 * 108.23493 * 46.29599 * 23 22 18 25 25 O 1.36106 * 119.40665 * 179.60774 * 17 16 15 26 26 H 1.09004 * 109.47200 * 306.40452 * 1 2 3 27 27 H 1.09005 * 109.47067 * 66.40955 * 1 2 3 28 28 H 1.09003 * 109.47246 * 186.40955 * 1 2 3 29 29 H 1.08996 * 109.46970 * 239.99993 * 2 1 3 30 30 H 1.09004 * 109.47134 * 120.00114 * 2 1 3 31 31 H 0.97000 * 119.99917 * 180.02562 * 8 7 5 32 32 H 1.00906 * 111.00297 * 30.07675 * 13 3 2 33 33 H 1.09004 * 109.47171 * 56.78501 * 14 13 3 34 34 H 1.08996 * 109.47144 * 296.79176 * 14 13 3 35 35 H 1.08001 * 119.96817 * 0.04595 * 16 15 14 36 36 H 1.07998 * 119.97164 * 180.17202 * 19 18 17 37 37 H 1.08994 * 109.47410 * 89.99939 * 21 20 15 38 38 H 1.09008 * 109.46478 * 330.00011 * 21 20 15 39 39 H 1.09000 * 109.47118 * 210.00006 * 21 20 15 40 40 H 1.09004 * 109.70946 * 165.97770 * 23 22 18 41 41 H 1.08994 * 109.71164 * 286.60536 * 23 22 18 42 42 H 1.08999 * 109.70709 * 59.95096 * 24 23 22 43 43 H 1.09002 * 109.70734 * 180.56930 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6006 1.9832 0.8383 5 6 3.5412 1.4446 0.1323 6 1 4.1508 1.8876 -0.6413 7 6 4.1363 0.8809 1.2409 8 7 3.3939 0.3410 2.1827 9 14 5.9970 0.8840 1.4053 10 1 6.5975 1.5466 0.2197 11 1 6.3842 1.6220 2.6343 12 1 6.4887 -0.5145 1.4920 13 7 1.6584 2.0968 -1.2587 14 6 1.5564 3.5519 -1.0858 15 6 1.2414 4.1945 -2.4120 16 6 2.2508 4.7837 -3.1503 17 6 1.9638 5.3762 -4.3707 18 6 0.6592 5.3731 -4.8508 19 6 -0.3477 4.7759 -4.1076 20 6 -0.0561 4.1943 -2.8879 21 6 -1.1538 3.5522 -2.0792 22 8 0.3564 5.9446 -6.0483 23 6 1.3195 6.8566 -6.5875 24 6 2.7084 6.2148 -6.4675 25 8 2.9665 5.9595 -5.0827 26 1 -0.3634 0.6099 0.8271 27 1 -0.3633 0.4113 -0.9418 28 1 -0.3634 -1.0213 0.1147 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8126 -0.0553 2.9629 32 1 0.7969 1.7140 -1.6185 33 1 2.5027 3.9404 -0.7094 34 1 0.7621 3.7785 -0.3746 35 1 3.2641 4.7823 -2.7764 36 1 -1.3615 4.7696 -4.4797 37 1 -1.5926 4.2922 -1.4100 38 1 -0.7404 2.7316 -1.4927 39 1 -1.9223 3.1682 -2.7502 40 1 1.0941 7.0519 -7.6359 41 1 1.2963 7.7904 -6.0258 42 1 2.7295 5.2778 -7.0240 43 1 3.4629 6.8948 -6.8629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:39 Heat of formation + Delta-G solvation = -55.667073 kcal Electronic energy + Delta-G solvation = -23518.137036 eV Core-core repulsion = 20142.567170 eV Total energy + Delta-G solvation = -3375.569866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18747 -38.50595 -37.20392 -36.08149 -32.98297 -32.07417 -31.53170 -30.25976 -29.15005 -27.05173 -26.25621 -24.55061 -23.59814 -22.54774 -21.93475 -19.90183 -19.52443 -18.39509 -17.24044 -16.86603 -16.25226 -15.38497 -15.13406 -14.86024 -14.69029 -14.40177 -14.21829 -13.96360 -13.70472 -13.54808 -13.38466 -12.76677 -12.63719 -12.44840 -12.22860 -11.93128 -11.65878 -11.33469 -11.18881 -11.14808 -10.92866 -10.79829 -10.62476 -10.55834 -10.37584 -9.92613 -9.67517 -9.60121 -9.06331 -8.35938 -8.32231 -7.77126 -7.18968 -5.94274 -3.97996 1.44958 1.49764 3.01402 3.21732 3.33620 3.41697 3.47439 3.83432 4.14338 4.48038 4.65388 4.71203 4.75035 5.02884 5.06884 5.27540 5.29632 5.33422 5.42156 5.47511 5.66048 5.69709 5.78215 5.89027 6.06233 6.15836 6.17139 6.28104 6.32458 6.39861 6.41475 6.47441 6.77874 6.85467 6.92004 7.00619 7.09937 7.20973 7.49477 7.51351 7.79919 7.95200 8.31106 8.41734 8.77810 9.10551 9.67084 11.11099 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018520 B = 0.004145 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.556614 B = 6752.873191 C = 7988.324890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.679 5.679 14 C 0.105 3.895 15 C -0.057 4.057 16 C -0.090 4.090 17 C 0.042 3.958 18 C 0.040 3.960 19 C -0.116 4.116 20 C -0.078 4.078 21 C -0.114 4.114 22 O -0.311 6.311 23 C 0.022 3.978 24 C 0.021 3.979 25 O -0.308 6.308 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.258 0.742 32 H 0.318 0.682 33 H 0.083 0.917 34 H 0.030 0.970 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 10.926 -14.088 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.530 4.530 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.024 4.024 15 C -0.058 4.058 16 C -0.109 4.109 17 C -0.002 4.002 18 C -0.004 4.004 19 C -0.134 4.134 20 C -0.079 4.079 21 C -0.171 4.171 22 O -0.226 6.226 23 C -0.054 4.054 24 C -0.055 4.055 25 O -0.223 6.223 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.590 10.874 -14.182 19.048 hybrid contribution 0.311 0.158 0.352 0.495 sum -6.279 11.032 -13.831 18.773 Atomic orbital electron populations 1.21902 0.99640 0.99822 0.99465 1.21776 0.91203 1.00342 1.03143 1.19198 0.95567 0.89956 0.84211 0.97915 1.21263 0.91244 1.36216 1.04272 0.91945 1.24953 0.98059 0.95674 0.95862 1.69883 1.34575 1.39606 1.09634 0.86507 0.85901 0.77570 0.77832 1.19778 1.21269 1.21190 1.60776 1.36469 1.00915 1.33052 1.20766 1.00957 0.90366 0.90304 1.19737 0.91503 0.97114 0.97415 1.20367 1.00524 0.97594 0.92462 1.18849 0.85897 1.00766 0.94719 1.18763 0.92353 1.01249 0.88051 1.20153 0.97767 1.01655 0.93848 1.19520 0.94823 0.99186 0.94354 1.20832 0.96297 1.00585 0.99364 1.86269 1.44955 1.58134 1.33272 1.23562 0.88721 0.92114 1.00995 1.23565 0.98078 1.01935 0.81911 1.86311 1.37810 1.76600 1.21560 0.93834 0.94641 0.94331 0.94018 0.88176 0.93188 0.86359 0.89847 0.95241 0.84528 0.85275 0.91201 0.90881 0.91584 0.86482 0.90785 0.90677 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.63 37.16 0.36 -2.50 16 2 C -0.13 -2.94 5.36 -26.73 -0.14 -3.08 16 3 C 0.22 5.33 2.03 -68.86 -0.14 5.19 16 4 H 0.00 0.09 7.83 -51.93 -0.41 -0.32 16 5 C -0.49 -13.45 8.61 -34.44 -0.30 -13.75 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.34 11.29 55.43 0.63 -24.71 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.68 -14.30 6.26 -109.23 -0.68 -14.99 16 14 C 0.11 1.98 4.82 -4.98 -0.02 1.96 16 15 C -0.06 -0.96 5.42 -104.63 -0.57 -1.52 16 16 C -0.09 -1.52 9.58 -39.42 -0.38 -1.90 16 17 C 0.04 0.66 6.49 -39.14 -0.25 0.41 16 18 C 0.04 0.60 6.49 -39.14 -0.25 0.35 16 19 C -0.12 -1.64 9.61 -39.42 -0.38 -2.02 16 20 C -0.08 -1.16 5.88 -104.63 -0.62 -1.78 16 21 C -0.11 -1.46 9.24 36.01 0.33 -1.12 16 22 O -0.31 -4.07 10.42 -32.84 -0.34 -4.41 16 23 C 0.02 0.20 7.26 37.40 0.27 0.47 16 24 C 0.02 0.20 7.26 37.40 0.27 0.47 16 25 O -0.31 -4.41 10.42 -32.85 -0.34 -4.75 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.60 6.67 -51.93 -0.35 0.25 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.32 6.14 4.82 -39.29 -0.19 5.95 16 33 H 0.08 1.70 7.84 -51.93 -0.41 1.29 16 34 H 0.03 0.54 7.25 -51.93 -0.38 0.16 16 35 H 0.14 2.30 8.03 -52.49 -0.42 1.88 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.03 5.20 -51.92 -0.27 0.76 16 39 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -30.31 343.18 -9.00 -39.31 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.50 Total: 5.30 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -1.91 Total: -17.42 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.06 Total: -39.70 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.68 Total: -9.17 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.31 -9.00 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.357 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds