Wall clock time and date at job start Tue Mar 31 2020 07:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47048 * 2 1 4 4 H 1.09000 * 109.46929 * 54.65615 * 3 2 1 5 5 C 1.50699 * 109.46933 * 174.65719 * 3 2 1 6 6 H 1.07997 * 119.99844 * 120.00085 * 5 3 2 7 7 C 1.37873 * 120.00081 * 299.99942 * 5 3 2 8 8 N 1.31521 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00196 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46822 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47444 * 119.99675 * 9 7 5 12 12 H 1.48499 * 109.47171 * 240.00089 * 9 7 5 13 13 N 1.46895 * 109.46993 * 294.65741 * 3 2 1 14 14 C 1.46894 * 111.00209 * 154.03540 * 13 3 2 15 15 C 1.50697 * 109.47398 * 176.78857 * 14 13 3 16 16 C 1.38242 * 119.94407 * 259.97500 * 15 14 13 17 17 C 1.38666 * 120.06592 * 180.02562 * 16 15 14 18 18 C 1.39012 * 119.81629 * 359.84645 * 17 16 15 19 19 C 1.38665 * 119.82590 * 359.90703 * 18 17 16 20 20 C 1.38208 * 119.94327 * 80.00154 * 15 14 13 21 21 C 1.50707 * 119.94321 * 0.03828 * 20 15 14 22 22 O 1.36101 * 120.77991 * 180.23849 * 18 17 16 23 23 C 1.43183 * 116.68776 * 342.60288 * 22 18 17 24 24 C 1.53469 * 108.23493 * 46.29599 * 23 22 18 25 25 O 1.36106 * 119.40665 * 179.60774 * 17 16 15 26 26 H 1.09004 * 109.47200 * 306.40452 * 1 2 3 27 27 H 1.09005 * 109.47067 * 66.40955 * 1 2 3 28 28 H 1.09003 * 109.47246 * 186.40955 * 1 2 3 29 29 H 1.08996 * 109.46970 * 239.99993 * 2 1 3 30 30 H 1.09004 * 109.47134 * 120.00114 * 2 1 3 31 31 H 0.97000 * 119.99917 * 180.02562 * 8 7 5 32 32 H 1.00906 * 111.00297 * 30.07675 * 13 3 2 33 33 H 1.09004 * 109.47171 * 56.78501 * 14 13 3 34 34 H 1.08996 * 109.47144 * 296.79176 * 14 13 3 35 35 H 1.08001 * 119.96817 * 0.04595 * 16 15 14 36 36 H 1.07998 * 119.97164 * 180.17202 * 19 18 17 37 37 H 1.08994 * 109.47410 * 89.99939 * 21 20 15 38 38 H 1.09008 * 109.46478 * 330.00011 * 21 20 15 39 39 H 1.09000 * 109.47118 * 210.00006 * 21 20 15 40 40 H 1.09004 * 109.70946 * 165.97770 * 23 22 18 41 41 H 1.08994 * 109.71164 * 286.60536 * 23 22 18 42 42 H 1.08999 * 109.70709 * 59.95096 * 24 23 22 43 43 H 1.09002 * 109.70734 * 180.56930 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6006 1.9832 0.8383 5 6 3.5412 1.4446 0.1323 6 1 4.1508 1.8876 -0.6413 7 6 4.1363 0.8809 1.2409 8 7 3.3939 0.3410 2.1827 9 14 5.9970 0.8840 1.4053 10 1 6.5975 1.5466 0.2197 11 1 6.3842 1.6220 2.6343 12 1 6.4887 -0.5145 1.4920 13 7 1.6584 2.0968 -1.2587 14 6 1.5564 3.5519 -1.0858 15 6 1.2414 4.1945 -2.4120 16 6 2.2508 4.7837 -3.1503 17 6 1.9638 5.3762 -4.3707 18 6 0.6592 5.3731 -4.8508 19 6 -0.3477 4.7759 -4.1076 20 6 -0.0561 4.1943 -2.8879 21 6 -1.1538 3.5522 -2.0792 22 8 0.3564 5.9446 -6.0483 23 6 1.3195 6.8566 -6.5875 24 6 2.7084 6.2148 -6.4675 25 8 2.9665 5.9595 -5.0827 26 1 -0.3634 0.6099 0.8271 27 1 -0.3633 0.4113 -0.9418 28 1 -0.3634 -1.0213 0.1147 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8126 -0.0553 2.9629 32 1 0.7969 1.7140 -1.6185 33 1 2.5027 3.9404 -0.7094 34 1 0.7621 3.7785 -0.3746 35 1 3.2641 4.7823 -2.7764 36 1 -1.3615 4.7696 -4.4797 37 1 -1.5926 4.2922 -1.4100 38 1 -0.7404 2.7316 -1.4927 39 1 -1.9223 3.1682 -2.7502 40 1 1.0941 7.0519 -7.6359 41 1 1.2963 7.7904 -6.0258 42 1 2.7295 5.2778 -7.0240 43 1 3.4629 6.8948 -6.8629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255149720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:38 Heat of formation + Delta-G solvation = -74.221169 kcal Electronic energy + Delta-G solvation = -23518.941602 eV Core-core repulsion = 20142.567170 eV Total energy + Delta-G solvation = -3376.374432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.21572 -39.72458 -38.21019 -37.78645 -34.65638 -33.42531 -33.08873 -31.48597 -30.23646 -28.62920 -27.71049 -25.86657 -24.82451 -24.12870 -23.22841 -21.44715 -20.90517 -19.42209 -18.44069 -18.19645 -17.89923 -16.78660 -16.56244 -16.20519 -15.88659 -15.75264 -15.37176 -15.28100 -15.00846 -14.85708 -14.53838 -14.43200 -13.89907 -13.76843 -13.55921 -13.23622 -13.12872 -12.87683 -12.81638 -12.54448 -12.48600 -12.27539 -11.98212 -11.91704 -11.77863 -11.51856 -11.45728 -11.28984 -11.01298 -10.41294 -9.53113 -9.02309 -8.85674 -8.05200 -6.16564 0.27857 0.31026 1.39982 1.42427 1.54188 2.06164 2.30514 2.44988 2.64918 3.19873 3.32614 3.69497 3.73704 3.95612 4.01113 4.10318 4.12738 4.20905 4.32952 4.49824 4.54171 4.57445 4.59224 4.61036 4.63721 4.74828 4.82579 4.89336 5.00354 5.09635 5.13993 5.18696 5.21952 5.30106 5.39727 5.60525 5.64308 5.75181 5.77894 5.92294 5.93888 6.37951 6.44785 6.51579 6.96849 7.01889 7.52321 8.97850 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018520 B = 0.004145 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.556614 B = 6752.873191 C = 7988.324890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.225 3.775 4 H -0.025 1.025 5 C -0.511 4.511 6 H 0.046 0.954 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.681 5.681 14 C 0.114 3.886 15 C -0.074 4.074 16 C -0.111 4.111 17 C 0.034 3.966 18 C 0.042 3.958 19 C -0.115 4.115 20 C -0.076 4.076 21 C -0.113 4.113 22 O -0.319 6.319 23 C 0.017 3.983 24 C 0.012 3.988 25 O -0.329 6.329 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.260 0.740 32 H 0.330 0.670 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.121 0.879 36 H 0.156 0.844 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.157 0.843 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 11.684 -16.119 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.117 3.883 4 H -0.008 1.008 5 C -0.550 4.550 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.314 5.314 14 C -0.015 4.015 15 C -0.075 4.075 16 C -0.130 4.130 17 C -0.010 4.010 18 C -0.003 4.003 19 C -0.133 4.133 20 C -0.077 4.077 21 C -0.169 4.169 22 O -0.234 6.234 23 C -0.058 4.058 24 C -0.063 4.063 25 O -0.244 6.244 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.150 0.850 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.139 0.861 36 H 0.173 0.827 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.175 0.825 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.857 11.644 -16.236 21.469 hybrid contribution 0.721 0.024 0.853 1.117 sum -7.136 11.668 -15.384 20.585 Atomic orbital electron populations 1.21766 0.96045 1.01262 1.00624 1.21600 0.94444 0.98824 1.01162 1.18962 0.93979 0.90732 0.84646 1.00795 1.21502 0.92950 1.36366 1.04145 0.93564 1.25624 1.02035 0.95374 0.95599 1.69997 1.36019 1.39912 1.09900 0.85592 0.81145 0.77687 0.77694 1.19902 1.20646 1.20543 1.60631 1.37428 1.02189 1.31201 1.20592 0.99778 0.89045 0.92049 1.19529 0.92787 0.98489 0.96668 1.20341 0.99986 0.99016 0.93642 1.18851 0.86842 1.00811 0.94542 1.18917 0.91946 1.00774 0.88648 1.20443 0.98878 1.00708 0.93264 1.19713 0.94318 0.98819 0.94839 1.20872 0.96102 1.00281 0.99653 1.86257 1.46297 1.58622 1.32216 1.23940 0.87474 0.91260 1.03091 1.23973 0.99813 1.02965 0.79546 1.86275 1.37959 1.76333 1.23848 0.94109 0.92337 0.92403 0.94744 0.91273 0.93074 0.85004 0.92525 0.94607 0.86105 0.82652 0.89859 0.92471 0.89042 0.82513 0.90213 0.90605 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 9.63 71.98 0.69 -4.44 16 2 C -0.12 -5.76 5.36 30.60 0.16 -5.59 16 3 C 0.22 11.37 2.03 44.17 0.09 11.46 16 4 H -0.03 -1.41 7.83 -2.39 -0.02 -1.43 16 5 C -0.51 -29.01 8.61 25.60 0.22 -28.79 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.01 0.66 5.29 84.65 0.45 1.11 16 8 N -0.92 -53.02 11.29 21.45 0.24 -52.78 16 9 Si 0.95 45.04 29.54 68.60 2.03 47.07 16 10 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.68 -29.36 6.26 -499.48 -3.13 -32.49 16 14 C 0.11 4.48 4.82 85.56 0.41 4.89 16 15 C -0.07 -2.53 5.42 -19.87 -0.11 -2.64 16 16 C -0.11 -3.86 9.58 22.37 0.21 -3.64 16 17 C 0.03 1.07 6.49 22.56 0.15 1.22 16 18 C 0.04 1.19 6.49 22.56 0.15 1.33 16 19 C -0.11 -3.00 9.61 22.37 0.22 -2.78 16 20 C -0.08 -2.17 5.88 -19.87 -0.12 -2.28 16 21 C -0.11 -2.63 9.24 71.24 0.66 -1.97 16 22 O -0.32 -7.49 10.42 -82.49 -0.86 -8.35 16 23 C 0.02 0.25 7.26 72.14 0.52 0.78 16 24 C 0.01 0.20 7.26 72.14 0.52 0.72 16 25 O -0.33 -9.24 10.42 -82.54 -0.86 -10.10 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.87 6.67 -2.38 -0.02 1.85 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 3.72 5.94 -2.38 -0.01 3.70 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.33 12.67 4.82 -89.69 -0.43 12.24 16 33 H 0.06 2.47 7.84 -2.39 -0.02 2.46 16 34 H 0.04 1.34 7.25 -2.39 -0.02 1.33 16 35 H 0.12 4.43 8.03 -2.91 -0.02 4.40 16 36 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.52 5.20 -2.38 -0.01 1.51 16 39 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 40 H 0.16 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -67.44 343.18 2.23 -65.21 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.58 Total: 22.04 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 4.23 Total: -30.62 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -2.88 Total: -85.26 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -1.72 Total: -18.44 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.44 2.23 -65.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.009 kcal (2) G-P(sol) polarization free energy of solvation -67.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds