Wall clock time and date at job start Tue Mar 31 2020 07:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46760 * 2 1 4 4 H 1.08989 * 109.47485 * 305.66520 * 3 2 1 5 5 C 1.50706 * 109.46858 * 185.66212 * 3 2 1 6 6 H 1.08003 * 120.00172 * 245.38507 * 5 3 2 7 7 C 1.37874 * 119.99799 * 65.38958 * 5 3 2 8 8 N 1.31514 * 120.00096 * 195.20998 * 7 5 3 9 9 Si 1.86802 * 120.00218 * 15.19773 * 7 5 3 10 10 H 1.48504 * 109.46846 * 95.25066 * 9 7 5 11 11 H 1.48500 * 109.47165 * 215.24867 * 9 7 5 12 12 H 1.48500 * 109.47273 * 335.25351 * 9 7 5 13 13 N 1.46903 * 109.47236 * 65.66970 * 3 2 1 14 14 C 1.46901 * 111.00118 * 212.53728 * 13 3 2 15 15 C 1.50698 * 113.56831 * 192.82839 * 14 13 3 16 16 C 1.38267 * 119.94349 * 355.11481 * 15 14 13 17 17 C 1.38141 * 120.05574 * 179.72719 * 16 15 14 18 18 C 1.38732 * 119.94068 * 0.56568 * 17 16 15 19 19 O 1.35905 * 120.05477 * 179.68116 * 18 17 16 20 20 C 1.42901 * 116.99886 * 0.02617 * 19 18 17 21 21 C 1.38729 * 119.89147 * 359.70855 * 18 17 16 22 22 C 1.38145 * 119.94346 * 359.97438 * 21 18 17 23 23 C 1.53367 * 114.56789 * 58.54787 * 14 13 3 24 24 O 1.43352 * 88.49798 * 220.44877 * 23 14 13 25 25 C 1.43353 * 88.32194 * 28.12895 * 24 23 14 26 26 H 1.09001 * 109.46527 * 184.78414 * 1 2 3 27 27 H 1.08996 * 109.47505 * 304.78410 * 1 2 3 28 28 H 1.09000 * 109.46960 * 64.78876 * 1 2 3 29 29 H 1.08997 * 109.47482 * 240.00358 * 2 1 3 30 30 H 1.09001 * 109.47382 * 119.99505 * 2 1 3 31 31 H 0.96998 * 120.00561 * 179.97438 * 8 7 5 32 32 H 1.00896 * 111.00617 * 88.58027 * 13 3 2 33 33 H 1.08008 * 119.96956 * 359.97438 * 16 15 14 34 34 H 1.07996 * 120.02931 * 180.29442 * 17 16 15 35 35 H 1.09001 * 109.46996 * 59.99698 * 20 19 18 36 36 H 1.09003 * 109.47129 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.46965 * 299.99726 * 20 19 18 38 38 H 1.07998 * 120.02983 * 180.02562 * 21 18 17 39 39 H 1.07997 * 119.97158 * 180.02562 * 22 21 18 40 40 H 1.08992 * 113.39218 * 105.52565 * 23 14 13 41 41 H 1.09003 * 113.39017 * 335.37138 * 23 14 13 42 42 H 1.08998 * 113.39204 * 86.74702 * 25 24 23 43 43 H 1.08999 * 113.39060 * 216.90766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5962 1.9848 -0.8348 5 6 3.5404 1.4449 -0.1402 6 1 4.1578 1.8071 0.6686 7 6 4.1250 0.9847 -1.3009 8 7 5.4095 0.7033 -1.3235 9 14 3.0926 0.7604 -2.8415 10 1 3.2031 1.9726 -3.6922 11 1 3.5812 -0.4209 -3.5972 12 1 1.6728 0.5514 -2.4598 13 7 1.6651 2.0944 1.2620 14 6 1.4101 3.5268 1.0592 15 6 1.3225 4.3110 2.3431 16 6 1.3778 3.6537 3.5583 17 6 1.3033 4.3708 4.7367 18 6 1.1613 5.7503 4.7000 19 8 1.0813 6.4574 5.8579 20 6 1.1510 5.7154 7.0772 21 6 1.1004 6.4068 3.4794 22 6 1.1819 5.6859 2.3039 23 6 0.3041 3.8402 0.0440 24 8 1.1135 4.9155 -0.4493 25 6 2.2708 4.1806 -0.0302 26 1 -0.3632 -1.0241 0.0857 27 1 -0.3634 0.5862 0.8440 28 1 -0.3633 0.4377 -0.9298 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 5.8208 0.3792 -2.1400 32 1 2.3714 1.9493 1.9677 33 1 1.4832 2.5792 3.5863 34 1 1.3513 3.8574 5.6857 35 1 2.1007 5.1824 7.1244 36 1 1.0758 6.3987 7.9231 37 1 0.3302 4.9992 7.1141 38 1 0.9902 7.4807 3.4483 39 1 1.1349 6.1965 1.3534 40 1 -0.6250 4.1744 0.5056 41 1 0.1487 3.0455 -0.6857 42 1 2.6297 3.4745 -0.7790 43 1 3.0652 4.8133 0.3657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:22 Heat of formation + Delta-G solvation = -8.599253 kcal Electronic energy + Delta-G solvation = -24197.976310 eV Core-core repulsion = 20824.447458 eV Total energy + Delta-G solvation = -3373.528852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.12862 -39.74855 -37.11993 -35.96304 -32.58724 -31.85877 -30.86893 -29.90414 -27.81857 -26.90424 -26.30117 -25.60524 -22.77142 -22.49245 -22.11045 -20.13966 -18.34004 -18.15153 -17.38012 -16.37349 -15.96427 -15.77884 -15.57525 -15.30678 -14.85304 -14.73317 -13.98718 -13.60316 -13.51801 -13.29131 -12.95072 -12.84557 -12.66380 -12.32436 -12.02658 -11.96338 -11.68269 -11.54409 -11.26692 -11.04372 -10.88499 -10.86732 -10.56273 -10.50813 -10.27928 -9.93714 -9.62650 -9.37828 -8.94281 -8.84238 -8.53637 -7.98691 -7.51761 -6.25094 -4.22364 1.49031 1.53455 3.19575 3.25039 3.30050 3.33576 3.83328 4.29757 4.43849 4.70236 4.84791 4.94043 4.99037 5.02197 5.05359 5.09631 5.28712 5.31958 5.57458 5.60366 5.72306 5.83110 5.94190 6.03257 6.05074 6.09887 6.14639 6.24039 6.27179 6.37631 6.46749 6.53254 6.59787 6.73507 6.78243 6.81802 6.89833 6.97086 7.09654 7.27785 7.41879 7.46802 7.85230 8.19665 8.36737 8.81250 9.40176 10.87196 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.004511 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.008822 B = 6205.477802 C = 6323.458204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.180 3.820 4 H 0.034 0.966 5 C -0.553 4.553 6 H 0.074 0.926 7 C 0.083 3.917 8 N -0.884 5.884 9 Si 0.856 3.144 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.249 1.249 13 N -0.659 5.659 14 C 0.101 3.899 15 C -0.087 4.087 16 C -0.060 4.060 17 C -0.211 4.211 18 C 0.118 3.882 19 O -0.322 6.322 20 C 0.028 3.972 21 C -0.156 4.156 22 C -0.068 4.068 23 C 0.042 3.958 24 O -0.381 6.381 25 C 0.001 3.999 26 H 0.033 0.967 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.265 0.735 32 H 0.342 0.658 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.127 0.873 39 H 0.140 0.860 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.665 6.689 10.877 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C 0.071 3.929 4 H 0.052 0.948 5 C -0.591 4.591 6 H 0.092 0.908 7 C -0.121 4.121 8 N -0.520 5.520 9 Si 0.682 3.318 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.173 1.173 13 N -0.290 5.290 14 C 0.007 3.993 15 C -0.088 4.088 16 C -0.078 4.078 17 C -0.230 4.230 18 C 0.073 3.927 19 O -0.236 6.236 20 C -0.067 4.067 21 C -0.174 4.174 22 C -0.087 4.087 23 C -0.036 4.036 24 O -0.299 6.299 25 C -0.077 4.077 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.145 0.855 39 H 0.158 0.842 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.237 6.888 10.620 16.280 hybrid contribution 0.719 -0.290 -0.859 1.157 sum -9.518 6.598 9.761 15.146 Atomic orbital electron populations 1.21786 0.98033 0.99592 1.00980 1.21771 0.93255 0.98757 1.00727 1.19698 0.94662 0.90997 0.87501 0.94797 1.21597 0.90113 1.44433 1.02965 0.90817 1.24911 0.94662 0.93710 0.98846 1.69980 1.11465 1.42589 1.27971 0.87274 0.82469 0.78184 0.83895 1.20503 1.21087 1.17314 1.60625 1.49503 1.07176 1.11733 1.21953 0.96229 0.89598 0.91491 1.19159 1.03388 0.93088 0.93154 1.20901 0.95600 1.00564 0.90719 1.21182 1.09582 0.92818 0.99407 1.19059 0.97165 0.90440 0.85995 1.86040 1.88460 1.36256 1.12797 1.23011 1.01392 0.97607 0.84680 1.20360 1.07371 1.00202 0.89489 1.21072 0.96078 0.93422 0.98100 1.23935 0.95419 0.89562 0.94639 1.89703 1.19633 1.36342 1.84178 1.25010 0.90150 0.94946 0.97625 0.94790 0.92008 0.94476 0.93094 0.92715 0.92527 0.83806 0.84632 0.85683 0.92673 0.88572 0.92736 0.85505 0.84220 0.90305 0.89787 0.86446 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.86 37.16 0.37 -2.17 16 2 C -0.11 -2.16 4.89 -26.73 -0.13 -2.29 16 3 C 0.18 3.80 0.81 -68.86 -0.06 3.74 16 4 H 0.03 0.75 3.33 -51.94 -0.17 0.58 16 5 C -0.55 -13.93 7.16 -34.44 -0.25 -14.18 16 6 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 7 C 0.08 2.23 5.33 -17.82 -0.10 2.13 16 8 N -0.88 -25.49 13.96 55.43 0.77 -24.72 16 9 Si 0.86 20.09 25.77 -169.99 -4.38 15.71 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.25 -5.49 5.54 56.52 0.31 -5.18 16 13 N -0.66 -12.09 5.14 -96.29 -0.50 -12.58 16 14 C 0.10 1.75 1.95 -132.32 -0.26 1.49 16 15 C -0.09 -1.38 5.36 -104.60 -0.56 -1.94 16 16 C -0.06 -0.87 9.20 -39.61 -0.36 -1.23 16 17 C -0.21 -2.76 9.04 -39.43 -0.36 -3.12 16 18 C 0.12 1.61 6.69 -39.22 -0.26 1.35 16 19 O -0.32 -3.98 10.50 -19.44 -0.20 -4.19 16 20 C 0.03 0.23 9.81 101.05 0.99 1.23 16 21 C -0.16 -2.16 9.99 -39.43 -0.39 -2.55 16 22 C -0.07 -1.03 8.92 -39.61 -0.35 -1.38 16 23 C 0.04 0.72 7.61 24.60 0.19 0.91 16 24 O -0.38 -7.04 10.92 -35.23 -0.38 -7.43 16 25 C 0.00 0.01 6.83 24.65 0.17 0.18 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.03 7.65 -51.93 -0.40 0.63 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 1.10 5.12 -51.93 -0.27 0.84 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.34 6.37 6.81 -39.29 -0.27 6.10 16 33 H 0.14 1.90 6.57 -52.48 -0.34 1.55 16 34 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 35 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 38 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.14 2.11 6.29 -52.49 -0.33 1.78 16 40 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 41 H 0.08 1.49 6.44 -51.93 -0.33 1.15 16 42 H 0.12 2.58 4.83 -51.93 -0.25 2.33 16 43 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -28.10 331.12 -7.14 -35.25 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.08 Total: 10.81 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.36 Total: -17.83 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.28 Total: -37.30 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.59 Total: -11.62 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.38 Total: 15.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.10 -7.14 -35.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.650 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds