Wall clock time and date at job start Tue Mar 31 2020 07:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46760 * 2 1 4 4 H 1.08989 * 109.47485 * 305.66520 * 3 2 1 5 5 C 1.50706 * 109.46858 * 185.66212 * 3 2 1 6 6 H 1.08003 * 120.00172 * 245.38507 * 5 3 2 7 7 C 1.37874 * 119.99799 * 65.38958 * 5 3 2 8 8 N 1.31514 * 120.00096 * 195.20998 * 7 5 3 9 9 Si 1.86802 * 120.00218 * 15.19773 * 7 5 3 10 10 H 1.48504 * 109.46846 * 95.25066 * 9 7 5 11 11 H 1.48500 * 109.47165 * 215.24867 * 9 7 5 12 12 H 1.48500 * 109.47273 * 335.25351 * 9 7 5 13 13 N 1.46903 * 109.47236 * 65.66970 * 3 2 1 14 14 C 1.46901 * 111.00118 * 212.53728 * 13 3 2 15 15 C 1.50698 * 113.56831 * 192.82839 * 14 13 3 16 16 C 1.38267 * 119.94349 * 355.11481 * 15 14 13 17 17 C 1.38141 * 120.05574 * 179.72719 * 16 15 14 18 18 C 1.38732 * 119.94068 * 0.56568 * 17 16 15 19 19 O 1.35905 * 120.05477 * 179.68116 * 18 17 16 20 20 C 1.42901 * 116.99886 * 0.02617 * 19 18 17 21 21 C 1.38729 * 119.89147 * 359.70855 * 18 17 16 22 22 C 1.38145 * 119.94346 * 359.97438 * 21 18 17 23 23 C 1.53367 * 114.56789 * 58.54787 * 14 13 3 24 24 O 1.43352 * 88.49798 * 220.44877 * 23 14 13 25 25 C 1.43353 * 88.32194 * 28.12895 * 24 23 14 26 26 H 1.09001 * 109.46527 * 184.78414 * 1 2 3 27 27 H 1.08996 * 109.47505 * 304.78410 * 1 2 3 28 28 H 1.09000 * 109.46960 * 64.78876 * 1 2 3 29 29 H 1.08997 * 109.47482 * 240.00358 * 2 1 3 30 30 H 1.09001 * 109.47382 * 119.99505 * 2 1 3 31 31 H 0.96998 * 120.00561 * 179.97438 * 8 7 5 32 32 H 1.00896 * 111.00617 * 88.58027 * 13 3 2 33 33 H 1.08008 * 119.96956 * 359.97438 * 16 15 14 34 34 H 1.07996 * 120.02931 * 180.29442 * 17 16 15 35 35 H 1.09001 * 109.46996 * 59.99698 * 20 19 18 36 36 H 1.09003 * 109.47129 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.46965 * 299.99726 * 20 19 18 38 38 H 1.07998 * 120.02983 * 180.02562 * 21 18 17 39 39 H 1.07997 * 119.97158 * 180.02562 * 22 21 18 40 40 H 1.08992 * 113.39218 * 105.52565 * 23 14 13 41 41 H 1.09003 * 113.39017 * 335.37138 * 23 14 13 42 42 H 1.08998 * 113.39204 * 86.74702 * 25 24 23 43 43 H 1.08999 * 113.39060 * 216.90766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5962 1.9848 -0.8348 5 6 3.5404 1.4449 -0.1402 6 1 4.1578 1.8071 0.6686 7 6 4.1250 0.9847 -1.3009 8 7 5.4095 0.7033 -1.3235 9 14 3.0926 0.7604 -2.8415 10 1 3.2031 1.9726 -3.6922 11 1 3.5812 -0.4209 -3.5972 12 1 1.6728 0.5514 -2.4598 13 7 1.6651 2.0944 1.2620 14 6 1.4101 3.5268 1.0592 15 6 1.3225 4.3110 2.3431 16 6 1.3778 3.6537 3.5583 17 6 1.3033 4.3708 4.7367 18 6 1.1613 5.7503 4.7000 19 8 1.0813 6.4574 5.8579 20 6 1.1510 5.7154 7.0772 21 6 1.1004 6.4068 3.4794 22 6 1.1819 5.6859 2.3039 23 6 0.3041 3.8402 0.0440 24 8 1.1135 4.9155 -0.4493 25 6 2.2708 4.1806 -0.0302 26 1 -0.3632 -1.0241 0.0857 27 1 -0.3634 0.5862 0.8440 28 1 -0.3633 0.4377 -0.9298 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 5.8208 0.3792 -2.1400 32 1 2.3714 1.9493 1.9677 33 1 1.4832 2.5792 3.5863 34 1 1.3513 3.8574 5.6857 35 1 2.1007 5.1824 7.1244 36 1 1.0758 6.3987 7.9231 37 1 0.3302 4.9992 7.1141 38 1 0.9902 7.4807 3.4483 39 1 1.1349 6.1965 1.3534 40 1 -0.6250 4.1744 0.5056 41 1 0.1487 3.0455 -0.6857 42 1 2.6297 3.4745 -0.7790 43 1 3.0652 4.8133 0.3657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:21 Heat of formation + Delta-G solvation = -27.021814 kcal Electronic energy + Delta-G solvation = -24198.775172 eV Core-core repulsion = 20824.447458 eV Total energy + Delta-G solvation = -3374.327714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.52726 -40.77586 -38.17532 -37.61900 -34.39116 -33.45502 -31.95565 -31.14196 -29.13750 -28.00517 -27.82423 -27.07808 -24.43175 -23.65881 -23.29562 -21.61816 -19.79346 -19.38955 -18.98885 -17.77806 -17.38908 -16.92119 -16.75118 -16.60167 -16.41825 -15.99320 -15.49809 -14.94813 -14.78308 -14.55513 -14.38100 -14.23807 -14.14578 -13.68819 -13.36003 -13.19675 -13.16525 -12.78514 -12.68164 -12.59434 -12.39910 -12.19139 -12.02093 -11.78247 -11.66533 -11.55762 -11.32055 -11.15114 -10.67198 -10.38391 -9.92528 -9.21367 -8.98550 -8.33189 -6.31689 0.38781 0.43522 1.30362 1.37797 1.44260 2.32074 2.40169 2.69505 2.99056 3.02038 3.29283 3.60406 3.84920 3.91242 4.00272 4.26372 4.36599 4.43542 4.43630 4.50441 4.51804 4.58173 4.59211 4.63588 4.73084 4.74646 4.78154 4.84592 4.92265 5.05213 5.12704 5.13293 5.27383 5.33212 5.37106 5.44261 5.48041 5.55406 5.70690 5.74771 5.81702 6.08473 6.37297 6.47287 6.58728 6.80325 7.33847 8.82637 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.004511 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.008822 B = 6205.477802 C = 6323.458204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.188 3.812 4 H 0.033 0.967 5 C -0.538 4.538 6 H 0.038 0.962 7 C 0.031 3.969 8 N -0.935 5.935 9 Si 0.908 3.092 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.223 1.223 13 N -0.645 5.645 14 C 0.109 3.891 15 C -0.106 4.106 16 C -0.065 4.065 17 C -0.207 4.207 18 C 0.119 3.881 19 O -0.333 6.333 20 C 0.018 3.982 21 C -0.162 4.162 22 C -0.073 4.073 23 C 0.043 3.957 24 O -0.383 6.383 25 C -0.003 4.003 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.341 0.659 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.061 0.939 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.081 6.933 12.322 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.078 3.922 4 H 0.051 0.949 5 C -0.577 4.577 6 H 0.056 0.944 7 C -0.168 4.168 8 N -0.574 5.574 9 Si 0.732 3.268 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.146 1.146 13 N -0.275 5.275 14 C 0.016 3.984 15 C -0.107 4.107 16 C -0.083 4.083 17 C -0.226 4.226 18 C 0.074 3.926 19 O -0.247 6.247 20 C -0.077 4.077 21 C -0.180 4.180 22 C -0.091 4.091 23 C -0.034 4.034 24 O -0.301 6.301 25 C -0.082 4.082 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.169 0.831 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.084 0.916 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.688 7.139 12.087 18.922 hybrid contribution 1.504 -0.268 -1.128 1.899 sum -11.183 6.871 10.959 17.099 Atomic orbital electron populations 1.21689 0.95144 1.01174 1.01475 1.21709 0.95796 0.97296 0.99902 1.19553 0.91672 0.92192 0.88747 0.94905 1.21841 0.92228 1.42240 1.01377 0.94369 1.25614 0.95445 0.94021 1.01745 1.70105 1.13425 1.45187 1.28698 0.86429 0.82465 0.77577 0.80297 1.20989 1.21356 1.14575 1.60617 1.48796 1.07917 1.10206 1.21955 0.95483 0.88797 0.92177 1.19084 1.05537 0.93380 0.92716 1.20979 0.95669 1.00831 0.90796 1.21416 1.08449 0.92764 0.99967 1.19186 0.96201 0.90696 0.86544 1.86037 1.88090 1.37173 1.13438 1.23345 1.02212 0.98519 0.83593 1.20534 1.07094 1.00980 0.89429 1.21019 0.96521 0.93129 0.98425 1.24006 0.96052 0.89091 0.94285 1.89696 1.19445 1.36673 1.84311 1.24847 0.90738 0.94780 0.97817 0.92754 0.91260 0.94170 0.94538 0.93081 0.92706 0.83986 0.84352 0.83108 0.92001 0.86183 0.91614 0.84133 0.84773 0.87988 0.90230 0.89339 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.86 71.98 0.71 -3.62 16 2 C -0.11 -4.24 4.89 30.60 0.15 -4.09 16 3 C 0.19 7.83 0.81 44.17 0.04 7.87 16 4 H 0.03 1.42 3.33 -2.39 -0.01 1.41 16 5 C -0.54 -27.78 7.16 25.60 0.18 -27.60 16 6 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16 7 C 0.03 1.72 5.33 84.65 0.45 2.17 16 8 N -0.94 -55.86 13.96 21.45 0.30 -55.56 16 9 Si 0.91 41.78 25.77 68.60 1.77 43.55 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.22 -9.24 5.54 99.48 0.55 -8.69 16 13 N -0.65 -23.16 5.14 -460.45 -2.37 -25.53 16 14 C 0.11 3.72 1.95 3.06 0.01 3.73 16 15 C -0.11 -3.26 5.36 -19.85 -0.11 -3.36 16 16 C -0.06 -1.77 9.20 22.25 0.20 -1.56 16 17 C -0.21 -4.92 9.04 22.36 0.20 -4.72 16 18 C 0.12 2.97 6.69 22.51 0.15 3.12 16 19 O -0.33 -7.37 10.50 -92.48 -0.97 -8.34 16 20 C 0.02 0.23 9.81 113.37 1.11 1.35 16 21 C -0.16 -4.23 9.99 22.37 0.22 -4.01 16 22 C -0.07 -2.10 8.92 22.25 0.20 -1.90 16 23 C 0.04 1.40 7.61 63.85 0.49 1.89 16 24 O -0.38 -13.97 10.92 -148.98 -1.63 -15.60 16 25 C 0.00 -0.13 6.83 63.88 0.44 0.31 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 2.08 7.65 -2.39 -0.02 2.06 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.52 5.12 -2.39 -0.01 1.51 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.34 12.61 6.81 -89.70 -0.61 12.00 16 33 H 0.14 3.65 6.57 -2.91 -0.02 3.63 16 34 H 0.15 2.71 6.30 -2.91 -0.02 2.69 16 35 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 38 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.13 3.97 6.29 -2.91 -0.02 3.95 16 40 H 0.10 2.86 8.12 -2.39 -0.02 2.84 16 41 H 0.08 2.67 6.44 -2.39 -0.02 2.66 16 42 H 0.09 3.98 4.83 -2.39 -0.01 3.97 16 43 H 0.07 2.76 8.09 -2.39 -0.02 2.75 16 Total: -1.00 -61.30 331.12 1.81 -59.49 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.26 Total: 32.43 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 4.44 Total: -30.44 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.07 Total: -81.09 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -2.60 Total: -23.94 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.77 Total: 43.55 kcal Total: -61.30 1.81 -59.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.472 kcal (2) G-P(sol) polarization free energy of solvation -61.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds