Wall clock time and date at job start Tue Mar 31 2020 07:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 H 1.08998 * 109.47028 * 304.99835 * 3 2 1 5 5 C 1.50702 * 109.47118 * 184.99962 * 3 2 1 6 6 H 1.07997 * 120.00062 * 240.00158 * 5 3 2 7 7 C 1.37876 * 119.99875 * 60.00050 * 5 3 2 8 8 N 1.31518 * 120.00317 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99816 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47572 * 89.99972 * 9 7 5 11 11 H 1.48508 * 109.47123 * 209.99873 * 9 7 5 12 12 H 1.48501 * 109.47078 * 329.99806 * 9 7 5 13 13 N 1.46900 * 109.47093 * 65.00104 * 3 2 1 14 14 C 1.45532 * 110.99712 * 190.00277 * 13 3 2 15 15 C 1.51509 * 114.58466 * 165.56237 * 14 13 3 16 16 C 1.53238 * 110.75355 * 67.79715 * 15 14 13 17 17 C 1.51456 * 108.17301 * 275.42552 * 16 15 14 18 18 C 1.38312 * 119.77872 * 249.37176 * 17 16 15 19 19 C 1.38620 * 119.62807 * 180.10629 * 18 17 16 20 20 O 1.35995 * 120.05523 * 179.74563 * 19 18 17 21 21 C 1.39194 * 119.89122 * 359.46074 * 19 18 17 22 22 O 1.35992 * 120.03091 * 180.33567 * 21 19 18 23 23 C 1.38598 * 119.93927 * 0.32171 * 21 19 18 24 24 C 1.37295 * 119.70129 * 69.05805 * 17 16 15 25 25 C 1.46903 * 111.00248 * 63.85865 * 13 3 2 26 26 H 1.09000 * 109.47215 * 299.99986 * 1 2 3 27 27 H 1.08993 * 109.46893 * 60.00188 * 1 2 3 28 28 H 1.09006 * 109.46491 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47215 * 240.00014 * 2 1 3 30 30 H 1.09005 * 109.47002 * 120.00218 * 2 1 3 31 31 H 0.96998 * 120.00071 * 180.02562 * 8 7 5 32 32 H 1.08992 * 108.46352 * 44.23367 * 14 13 3 33 33 H 1.08998 * 108.45773 * 286.87575 * 14 13 3 34 34 H 1.09007 * 109.21703 * 307.47684 * 15 14 13 35 35 H 1.08993 * 109.22598 * 188.13251 * 15 14 13 36 36 H 1.09008 * 109.72270 * 155.75386 * 16 15 14 37 37 H 1.08999 * 109.72194 * 35.09766 * 16 15 14 38 38 H 1.08000 * 120.18625 * 359.85525 * 18 17 16 39 39 H 0.96705 * 113.99628 * 269.71870 * 20 19 18 40 40 H 0.96708 * 113.99712 * 90.00379 * 22 21 19 41 41 H 1.07999 * 120.16499 * 179.97438 * 23 21 19 42 42 H 1.09004 * 109.62205 * 92.04336 * 25 13 3 43 43 H 1.08994 * 109.61393 * 331.50702 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8801 -1.3811 10 1 6.5540 -0.3519 -0.7598 11 1 6.3836 0.9215 -2.8165 12 1 6.5575 2.0720 -0.6888 13 7 1.6514 2.0992 1.2552 14 6 1.9100 3.5302 1.1969 15 6 1.2372 4.3374 2.2884 16 6 1.8449 4.0123 3.6570 17 6 1.1542 2.7784 4.1995 18 6 0.3102 2.8870 5.2899 19 6 -0.3186 1.7553 5.7852 20 8 -1.1462 1.8513 6.8601 21 6 -0.1061 0.5214 5.1770 22 8 -0.7269 -0.5895 5.6564 23 6 0.7384 0.4262 4.0821 24 6 1.3663 1.5614 3.6005 25 6 2.2940 1.4540 2.4080 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8294 -0.0619 -2.9495 32 1 1.5688 3.9035 0.2314 33 1 2.9862 3.6894 1.2636 34 1 0.1727 4.1029 2.3036 35 1 1.3670 5.3995 2.0811 36 1 1.6891 4.8500 4.3370 37 1 2.9121 3.8191 3.5491 38 1 0.1451 3.8475 5.7552 39 1 -0.7019 1.7308 7.7105 40 1 -1.5896 -0.7622 5.2548 41 1 0.9061 -0.5294 3.6077 42 1 3.2357 1.9559 2.6305 43 1 2.4803 0.4040 2.1826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:17 Heat of formation + Delta-G solvation = -64.931976 kcal Electronic energy + Delta-G solvation = -24419.742207 eV Core-core repulsion = 21043.770585 eV Total energy + Delta-G solvation = -3375.971622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.28911 -38.37789 -36.80995 -36.22095 -34.05424 -32.45874 -31.20006 -30.14709 -29.33800 -26.65106 -25.19319 -24.44698 -22.92369 -22.27827 -20.75607 -20.12104 -19.07057 -18.30707 -17.38301 -16.55340 -16.20413 -15.52503 -15.22296 -14.79683 -14.43450 -14.09197 -13.92784 -13.61363 -13.28159 -13.13374 -12.76275 -12.62204 -12.32365 -12.07646 -11.66314 -11.51430 -11.39150 -11.24439 -11.00521 -10.85133 -10.71282 -10.48455 -10.39543 -10.31621 -10.02982 -9.94477 -9.64081 -9.44932 -9.13719 -8.56345 -8.40836 -8.05063 -7.17190 -6.03209 -4.17368 1.35205 1.45341 3.23426 3.31356 3.33432 3.63102 4.19265 4.35568 4.44450 4.85400 4.98939 5.19039 5.24345 5.32441 5.41124 5.49352 5.61941 5.76639 5.92252 5.94785 6.12170 6.14903 6.21592 6.26677 6.34130 6.44116 6.45801 6.51108 6.54802 6.63176 6.67183 6.80630 6.87907 7.00330 7.11791 7.16975 7.31857 7.51965 7.57129 7.72460 7.86189 7.93861 8.10356 8.31824 8.43540 8.92742 9.51012 10.95736 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.004926 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.882958 B = 5682.263502 C = 6193.719225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.219 3.781 4 H 0.040 0.960 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.535 5.535 14 C 0.069 3.931 15 C -0.111 4.111 16 C -0.079 4.079 17 C -0.066 4.066 18 C -0.131 4.131 19 C 0.065 3.935 20 O -0.496 6.496 21 C 0.071 3.929 22 O -0.497 6.497 23 C -0.116 4.116 24 C -0.044 4.044 25 C 0.103 3.897 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.024 0.976 29 H 0.093 0.907 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.385 0.615 40 H 0.387 0.613 41 H 0.132 0.868 42 H 0.045 0.955 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 3.629 12.649 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.113 3.887 4 H 0.058 0.942 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.258 5.258 14 C -0.060 4.060 15 C -0.149 4.149 16 C -0.116 4.116 17 C -0.067 4.067 18 C -0.150 4.150 19 C 0.020 3.980 20 O -0.305 6.305 21 C 0.026 3.974 22 O -0.306 6.306 23 C -0.136 4.136 24 C -0.045 4.045 25 C -0.025 4.025 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.111 0.889 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.145 0.855 39 H 0.239 0.761 40 H 0.243 0.757 41 H 0.150 0.850 42 H 0.063 0.937 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.200 3.543 12.406 14.314 hybrid contribution 1.768 -0.045 -0.140 1.774 sum -4.432 3.498 12.265 13.503 Atomic orbital electron populations 1.21706 0.98823 0.98401 1.00616 1.21650 0.92307 0.99134 1.01880 1.19319 0.93054 0.91144 0.85142 0.94225 1.21758 0.92710 1.38333 1.05615 0.92707 1.24901 0.97777 0.94967 0.95648 1.69868 1.34812 1.38102 1.09441 0.86693 0.86229 0.78395 0.77266 1.20673 1.21199 1.20087 1.61181 1.58928 1.01639 1.04083 1.21251 0.97927 0.89238 0.97577 1.21393 1.00971 0.98913 0.93668 1.20848 0.99686 0.94080 0.97007 1.19610 0.97209 0.95272 0.94586 1.21174 0.97677 0.97881 0.98251 1.18743 0.95247 0.91672 0.92298 1.84789 1.35772 1.94371 1.15583 1.18807 0.97803 0.85093 0.95673 1.84760 1.36900 1.42765 1.66205 1.21335 0.97711 0.99458 0.95047 1.19971 0.96982 0.91515 0.96034 1.21065 0.92386 1.01299 0.87744 0.93342 0.94267 0.95646 0.88866 0.94862 0.92839 0.91880 0.95322 0.91541 0.91887 0.91616 0.90713 0.85549 0.76068 0.75727 0.85013 0.93729 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.80 37.16 0.36 -2.38 16 2 C -0.11 -2.52 5.15 -26.73 -0.14 -2.66 16 3 C 0.22 5.11 1.67 -68.86 -0.12 5.00 16 4 H 0.04 1.04 7.82 -51.93 -0.41 0.63 16 5 C -0.55 -13.86 7.32 -34.44 -0.25 -14.11 16 6 H 0.05 1.40 6.49 -52.49 -0.34 1.06 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.05 11.29 55.43 0.63 -23.42 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.53 -10.62 3.74 -231.10 -0.87 -11.48 16 14 C 0.07 1.25 4.55 -5.32 -0.02 1.23 16 15 C -0.11 -1.63 5.79 -27.36 -0.16 -1.79 16 16 C -0.08 -1.07 5.49 -27.39 -0.15 -1.22 16 17 C -0.07 -0.98 5.01 -104.57 -0.52 -1.51 16 18 C -0.13 -1.79 9.63 -39.41 -0.38 -2.17 16 19 C 0.07 0.92 6.72 -39.09 -0.26 0.65 16 20 O -0.50 -6.13 13.29 -34.27 -0.46 -6.58 16 21 C 0.07 1.05 6.72 -39.09 -0.26 0.78 16 22 O -0.50 -6.60 13.29 -34.27 -0.46 -7.05 16 23 C -0.12 -1.83 9.62 -39.40 -0.38 -2.21 16 24 C -0.04 -0.72 5.41 -104.53 -0.57 -1.29 16 25 C 0.10 1.92 3.91 -4.60 -0.02 1.90 16 26 H 0.05 0.94 7.75 -51.93 -0.40 0.54 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 30 H 0.03 0.73 6.02 -51.93 -0.31 0.42 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.06 1.19 7.73 -51.93 -0.40 0.79 16 33 H 0.03 0.56 7.01 -51.93 -0.36 0.19 16 34 H 0.07 1.03 7.86 -51.92 -0.41 0.62 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.74 7.93 -51.92 -0.41 0.33 16 37 H 0.07 1.06 6.96 -51.93 -0.36 0.70 16 38 H 0.13 1.48 7.98 -52.49 -0.42 1.06 16 39 H 0.38 3.08 9.06 45.56 0.41 3.49 16 40 H 0.39 3.64 9.07 45.56 0.41 4.05 16 41 H 0.13 2.03 7.97 -52.49 -0.42 1.61 16 42 H 0.04 0.85 6.32 -51.93 -0.33 0.53 16 43 H 0.09 1.74 5.34 -51.93 -0.28 1.46 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -28.68 334.52 -8.82 -37.51 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.74 Total: 8.54 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -2.96 Total: -18.04 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.24 Total: -34.90 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.91 Total: -13.64 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.68 -8.82 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.423 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds