Wall clock time and date at job start Tue Mar 31 2020 07:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 H 1.08998 * 109.47028 * 304.99835 * 3 2 1 5 5 C 1.50702 * 109.47118 * 184.99962 * 3 2 1 6 6 H 1.07997 * 120.00062 * 240.00158 * 5 3 2 7 7 C 1.37876 * 119.99875 * 60.00050 * 5 3 2 8 8 N 1.31518 * 120.00317 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99816 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47572 * 89.99972 * 9 7 5 11 11 H 1.48508 * 109.47123 * 209.99873 * 9 7 5 12 12 H 1.48501 * 109.47078 * 329.99806 * 9 7 5 13 13 N 1.46900 * 109.47093 * 65.00104 * 3 2 1 14 14 C 1.45532 * 110.99712 * 190.00277 * 13 3 2 15 15 C 1.51509 * 114.58466 * 165.56237 * 14 13 3 16 16 C 1.53238 * 110.75355 * 67.79715 * 15 14 13 17 17 C 1.51456 * 108.17301 * 275.42552 * 16 15 14 18 18 C 1.38312 * 119.77872 * 249.37176 * 17 16 15 19 19 C 1.38620 * 119.62807 * 180.10629 * 18 17 16 20 20 O 1.35995 * 120.05523 * 179.74563 * 19 18 17 21 21 C 1.39194 * 119.89122 * 359.46074 * 19 18 17 22 22 O 1.35992 * 120.03091 * 180.33567 * 21 19 18 23 23 C 1.38598 * 119.93927 * 0.32171 * 21 19 18 24 24 C 1.37295 * 119.70129 * 69.05805 * 17 16 15 25 25 C 1.46903 * 111.00248 * 63.85865 * 13 3 2 26 26 H 1.09000 * 109.47215 * 299.99986 * 1 2 3 27 27 H 1.08993 * 109.46893 * 60.00188 * 1 2 3 28 28 H 1.09006 * 109.46491 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47215 * 240.00014 * 2 1 3 30 30 H 1.09005 * 109.47002 * 120.00218 * 2 1 3 31 31 H 0.96998 * 120.00071 * 180.02562 * 8 7 5 32 32 H 1.08992 * 108.46352 * 44.23367 * 14 13 3 33 33 H 1.08998 * 108.45773 * 286.87575 * 14 13 3 34 34 H 1.09007 * 109.21703 * 307.47684 * 15 14 13 35 35 H 1.08993 * 109.22598 * 188.13251 * 15 14 13 36 36 H 1.09008 * 109.72270 * 155.75386 * 16 15 14 37 37 H 1.08999 * 109.72194 * 35.09766 * 16 15 14 38 38 H 1.08000 * 120.18625 * 359.85525 * 18 17 16 39 39 H 0.96705 * 113.99628 * 269.71870 * 20 19 18 40 40 H 0.96708 * 113.99712 * 90.00379 * 22 21 19 41 41 H 1.07999 * 120.16499 * 179.97438 * 23 21 19 42 42 H 1.09004 * 109.62205 * 92.04336 * 25 13 3 43 43 H 1.08994 * 109.61393 * 331.50702 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8801 -1.3811 10 1 6.5540 -0.3519 -0.7598 11 1 6.3836 0.9215 -2.8165 12 1 6.5575 2.0720 -0.6888 13 7 1.6514 2.0992 1.2552 14 6 1.9100 3.5302 1.1969 15 6 1.2372 4.3374 2.2884 16 6 1.8449 4.0123 3.6570 17 6 1.1542 2.7784 4.1995 18 6 0.3102 2.8870 5.2899 19 6 -0.3186 1.7553 5.7852 20 8 -1.1462 1.8513 6.8601 21 6 -0.1061 0.5214 5.1770 22 8 -0.7269 -0.5895 5.6564 23 6 0.7384 0.4262 4.0821 24 6 1.3663 1.5614 3.6005 25 6 2.2940 1.4540 2.4080 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8294 -0.0619 -2.9495 32 1 1.5688 3.9035 0.2314 33 1 2.9862 3.6894 1.2636 34 1 0.1727 4.1029 2.3036 35 1 1.3670 5.3995 2.0811 36 1 1.6891 4.8500 4.3370 37 1 2.9121 3.8191 3.5491 38 1 0.1451 3.8475 5.7552 39 1 -0.7019 1.7308 7.7105 40 1 -1.5896 -0.7622 5.2548 41 1 0.9061 -0.5294 3.6077 42 1 3.2357 1.9559 2.6305 43 1 2.4803 0.4040 2.1826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:16 Heat of formation + Delta-G solvation = -84.298431 kcal Electronic energy + Delta-G solvation = -24420.582000 eV Core-core repulsion = 21043.770585 eV Total energy + Delta-G solvation = -3376.811415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44544 -39.71721 -37.81850 -37.59367 -35.46938 -34.15661 -32.86448 -31.42299 -30.59488 -28.44673 -26.45999 -25.98369 -24.53903 -23.49931 -22.09943 -21.38906 -20.80902 -19.37022 -18.64633 -18.09709 -17.61596 -17.02270 -16.44453 -16.27464 -15.81278 -15.63154 -15.18395 -14.93788 -14.67223 -14.55972 -14.20437 -13.92716 -13.74300 -13.53149 -13.16585 -13.09677 -12.88000 -12.75051 -12.66560 -12.41455 -12.13227 -12.04654 -11.95655 -11.65579 -11.56702 -11.41632 -11.18127 -11.06854 -10.95097 -10.43193 -9.67689 -9.20356 -8.88105 -8.01861 -6.25181 0.23983 0.33522 1.37029 1.39816 1.47357 2.40260 2.51747 3.16084 3.17890 3.42683 3.44469 3.87097 3.95690 4.15290 4.19145 4.29145 4.38259 4.53051 4.63315 4.67417 4.74548 4.78075 4.86048 4.91197 4.96206 5.00397 5.09448 5.11606 5.18453 5.26432 5.33352 5.37439 5.43045 5.49527 5.51843 5.63615 5.76079 5.80958 5.87356 6.07261 6.21070 6.42598 6.69189 6.75057 6.95037 6.96411 7.46349 8.92360 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.004926 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.882958 B = 5682.263502 C = 6193.719225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.226 3.774 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.048 0.952 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.531 5.531 14 C 0.069 3.931 15 C -0.101 4.101 16 C -0.076 4.076 17 C -0.070 4.070 18 C -0.125 4.125 19 C 0.072 3.928 20 O -0.499 6.499 21 C 0.068 3.932 22 O -0.502 6.502 23 C -0.128 4.128 24 C -0.062 4.062 25 C 0.113 3.887 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.047 0.953 33 H 0.012 0.988 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.154 0.846 39 H 0.406 0.594 40 H 0.404 0.596 41 H 0.125 0.875 42 H 0.034 0.966 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 4.715 14.961 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.119 3.881 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.255 5.255 14 C -0.060 4.060 15 C -0.139 4.139 16 C -0.113 4.113 17 C -0.071 4.071 18 C -0.143 4.143 19 C 0.027 3.973 20 O -0.312 6.312 21 C 0.023 3.977 22 O -0.315 6.315 23 C -0.147 4.147 24 C -0.063 4.063 25 C -0.015 4.015 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.172 0.828 39 H 0.264 0.736 40 H 0.262 0.738 41 H 0.143 0.857 42 H 0.052 0.948 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.903 4.629 14.748 16.929 hybrid contribution 1.924 -0.398 -0.781 2.115 sum -4.978 4.231 13.967 15.419 Atomic orbital electron populations 1.21547 0.96524 0.99629 1.00451 1.21478 0.94299 0.98256 1.00326 1.19067 0.91765 0.91437 0.85835 0.97731 1.21986 0.93939 1.37717 1.05283 0.93333 1.25567 1.01504 0.94936 0.95561 1.69994 1.36186 1.38879 1.09831 0.85793 0.81782 0.78351 0.77111 1.20358 1.21024 1.19785 1.61176 1.58774 1.02483 1.03031 1.21346 0.97367 0.88616 0.98678 1.21311 1.00115 0.99524 0.92935 1.20866 0.98832 0.94763 0.96811 1.19742 0.97531 0.94903 0.94913 1.21389 0.96547 0.98945 0.97408 1.18806 0.94585 0.91376 0.92578 1.84739 1.35893 1.94252 1.16286 1.18835 0.97708 0.85888 0.95273 1.84715 1.38061 1.42390 1.66288 1.21318 0.98441 0.99048 0.95867 1.19740 0.97805 0.92880 0.95835 1.20888 0.92765 0.99600 0.88219 0.92779 0.94979 0.93702 0.91863 0.94819 0.92952 0.93436 0.96970 0.91917 0.89255 0.88199 0.91633 0.82835 0.73589 0.73757 0.85691 0.94769 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.80 71.98 0.71 -4.26 16 2 C -0.11 -4.92 5.15 30.59 0.16 -4.77 16 3 C 0.23 10.98 1.67 44.17 0.07 11.05 16 4 H 0.00 0.26 7.82 -2.39 -0.02 0.24 16 5 C -0.55 -28.93 7.32 25.60 0.19 -28.74 16 6 H 0.05 2.56 6.49 -2.91 -0.02 2.54 16 7 C 0.02 1.31 5.29 84.65 0.45 1.76 16 8 N -0.91 -51.05 11.29 21.45 0.24 -50.81 16 9 Si 0.94 42.85 29.54 68.60 2.03 44.87 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 N -0.53 -21.62 3.74 -885.05 -3.31 -24.93 16 14 C 0.07 2.53 4.55 86.07 0.39 2.92 16 15 C -0.10 -2.77 5.79 30.19 0.17 -2.60 16 16 C -0.08 -1.86 5.49 30.17 0.17 -1.70 16 17 C -0.07 -1.93 5.01 -19.83 -0.10 -2.03 16 18 C -0.12 -2.96 9.63 22.38 0.22 -2.74 16 19 C 0.07 1.79 6.72 22.59 0.15 1.94 16 20 O -0.50 -10.47 13.29 -79.58 -1.06 -11.53 16 21 C 0.07 1.87 6.72 22.59 0.15 2.02 16 22 O -0.50 -12.31 13.29 -79.55 -1.06 -13.36 16 23 C -0.13 -3.93 9.62 22.39 0.22 -3.71 16 24 C -0.06 -1.99 5.41 -19.81 -0.11 -2.10 16 25 C 0.11 4.31 3.91 85.80 0.34 4.64 16 26 H 0.05 2.08 7.75 -2.39 -0.02 2.06 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.06 3.36 5.95 -2.39 -0.01 3.35 16 30 H 0.03 1.54 6.02 -2.38 -0.01 1.52 16 31 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.05 1.86 7.73 -2.39 -0.02 1.84 16 33 H 0.01 0.48 7.01 -2.39 -0.02 0.46 16 34 H 0.06 1.80 7.86 -2.38 -0.02 1.78 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.10 1.81 7.93 -2.38 -0.02 1.79 16 37 H 0.07 1.76 6.96 -2.39 -0.02 1.74 16 38 H 0.15 2.81 7.98 -2.91 -0.02 2.78 16 39 H 0.41 4.91 9.06 -74.05 -0.67 4.24 16 40 H 0.40 6.72 9.07 -74.05 -0.67 6.05 16 41 H 0.13 3.90 7.97 -2.91 -0.02 3.88 16 42 H 0.03 1.35 6.32 -2.38 -0.02 1.33 16 43 H 0.07 2.78 5.34 -2.39 -0.01 2.77 16 Total: -1.00 -62.56 334.52 -0.29 -62.85 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.30 Total: 21.22 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 3.17 Total: -28.31 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -3.07 Total: -75.74 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -2.11 Total: -24.89 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -62.56 -0.29 -62.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.452 kcal (2) G-P(sol) polarization free energy of solvation -62.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds