Wall clock time and date at job start Tue Mar 31 2020 07:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 H 1.08992 * 109.47334 * 177.29973 * 3 2 1 5 5 C 1.50703 * 109.46662 * 297.29531 * 3 2 1 6 6 H 1.08001 * 119.99462 * 120.00449 * 5 3 2 7 7 C 1.37874 * 120.00146 * 300.00267 * 5 3 2 8 8 N 1.31519 * 120.00084 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00167 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46869 * 90.00093 * 9 7 5 11 11 H 1.48500 * 109.47104 * 210.00485 * 9 7 5 12 12 H 1.48497 * 109.46769 * 330.00573 * 9 7 5 13 13 N 1.46899 * 109.47081 * 57.29331 * 3 2 1 14 14 C 1.45528 * 110.99661 * 186.49620 * 13 3 2 15 15 C 1.51491 * 114.57301 * 165.47037 * 14 13 3 16 16 C 1.53245 * 110.72446 * 67.79076 * 15 14 13 17 17 C 1.51438 * 108.16902 * 275.45697 * 16 15 14 18 18 C 1.38329 * 119.75936 * 249.19901 * 17 16 15 19 19 C 1.38617 * 119.63620 * 179.87084 * 18 17 16 20 20 O 1.35992 * 120.04746 * 180.02562 * 19 18 17 21 21 C 1.39192 * 119.89789 * 359.97438 * 19 18 17 22 22 O 1.35993 * 120.03562 * 180.02562 * 21 19 18 23 23 C 1.38603 * 119.93273 * 0.05696 * 21 19 18 24 24 C 1.37288 * 119.74970 * 69.17262 * 17 16 15 25 25 C 1.46901 * 110.99633 * 60.33938 * 13 3 2 26 26 H 1.09007 * 109.47409 * 185.23242 * 1 2 3 27 27 H 1.09003 * 109.47236 * 305.22461 * 1 2 3 28 28 H 1.08991 * 109.47491 * 65.22785 * 1 2 3 29 29 H 1.08999 * 109.46831 * 239.99684 * 2 1 3 30 30 H 1.09000 * 109.46809 * 120.00305 * 2 1 3 31 31 H 0.96994 * 120.00212 * 179.97438 * 8 7 5 32 32 H 1.09004 * 108.45936 * 286.81928 * 14 13 3 33 33 H 1.08997 * 108.45807 * 44.17457 * 14 13 3 34 34 H 1.09006 * 109.25148 * 307.46126 * 15 14 13 35 35 H 1.09007 * 109.21867 * 188.10140 * 15 14 13 36 36 H 1.09005 * 109.72560 * 155.78682 * 16 15 14 37 37 H 1.09009 * 109.72227 * 35.12399 * 16 15 14 38 38 H 1.07994 * 120.18036 * 359.89089 * 18 17 16 39 39 H 0.96695 * 114.00246 * 90.00387 * 20 19 18 40 40 H 0.96693 * 114.00191 * 89.99451 * 22 21 19 41 41 H 1.08000 * 120.16695 * 180.02562 * 23 21 19 42 42 H 1.08995 * 109.62127 * 331.56296 * 25 13 3 43 43 H 1.09005 * 109.61911 * 92.10853 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4428 0.0484 5 6 1.5932 2.1332 -1.2627 6 1 0.9688 3.0126 -1.2051 7 6 1.9814 1.6425 -2.4913 8 7 1.5918 2.2456 -3.5932 9 14 3.0619 0.1220 -2.5908 10 1 2.2061 -1.0899 -2.6550 11 1 3.9086 0.1952 -3.8086 12 1 3.9298 0.0520 -1.3879 13 7 1.4977 2.1536 1.1654 14 6 1.8368 3.5680 1.1174 15 6 1.0456 4.4383 2.0722 16 6 1.4156 4.1240 3.5257 17 6 0.5861 2.9408 3.9789 18 6 -0.4080 3.1208 4.9238 19 6 -1.1675 2.0365 5.3348 20 8 -2.1473 2.2040 6.2628 21 6 -0.9264 0.7762 4.7953 22 8 -1.6702 -0.2894 5.1961 23 6 0.0729 0.6083 3.8497 24 6 0.8261 1.6975 3.4484 25 6 1.9203 1.5116 2.4173 26 1 -0.3634 -1.0234 0.0937 27 1 -0.3634 0.5928 0.8395 28 1 -0.3634 0.4306 -0.9330 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8652 1.9007 -4.4575 32 1 2.8966 3.6769 1.3479 33 1 1.6694 3.9288 0.1026 34 1 -0.0192 4.2566 1.9256 35 1 1.2619 5.4865 1.8653 36 1 1.1997 4.9873 4.1552 37 1 2.4753 3.8767 3.5903 38 1 -0.5916 4.1008 5.3387 39 1 -3.0127 2.4160 5.8872 40 1 -2.4675 -0.4334 4.6683 41 1 0.2629 -0.3678 3.4283 42 1 2.0846 0.4478 2.2458 43 1 2.8409 1.9741 2.7732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:19 Heat of formation + Delta-G solvation = -48.983338 kcal Electronic energy + Delta-G solvation = -24513.245481 eV Core-core repulsion = 21137.965443 eV Total energy + Delta-G solvation = -3375.280038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41480 -38.55721 -36.89869 -36.45448 -34.19167 -32.63972 -31.45407 -30.33949 -29.41464 -27.05626 -25.39142 -24.35579 -23.21126 -22.33795 -20.94999 -20.26871 -19.23584 -18.56103 -17.12005 -16.71290 -16.43872 -15.90714 -15.37728 -14.80717 -14.48814 -14.28758 -14.07418 -13.67142 -13.49882 -13.16577 -13.01913 -12.83976 -12.61055 -12.36696 -12.17845 -11.62761 -11.52509 -11.39651 -11.06237 -10.92133 -10.60683 -10.49056 -10.47152 -10.31396 -10.14411 -10.04336 -9.87578 -9.38096 -8.96171 -8.64881 -8.58508 -8.16633 -7.34826 -6.12137 -4.10300 1.26891 1.34503 3.22750 3.32475 3.34510 3.55465 4.14502 4.19348 4.34849 4.67120 4.87375 5.02030 5.19974 5.23462 5.28759 5.42671 5.47708 5.63224 5.72418 5.82167 5.93527 5.96911 6.05226 6.07946 6.16672 6.17857 6.19941 6.31275 6.35963 6.39144 6.65952 6.68689 6.72546 6.77357 6.90178 6.95112 7.02031 7.12051 7.38532 7.38561 7.56760 7.81238 7.89976 8.10914 8.59212 8.93025 9.49813 11.00087 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.005100 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.226693 B = 5489.328122 C = 6205.868675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.190 3.810 4 H -0.002 1.002 5 C -0.502 4.502 6 H 0.085 0.915 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.520 5.520 14 C 0.060 3.940 15 C -0.110 4.110 16 C -0.081 4.081 17 C -0.061 4.061 18 C -0.130 4.130 19 C 0.069 3.931 20 O -0.492 6.492 21 C 0.071 3.929 22 O -0.492 6.492 23 C -0.115 4.115 24 C -0.044 4.044 25 C 0.084 3.916 26 H 0.020 0.980 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.013 0.987 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.382 0.618 40 H 0.383 0.617 41 H 0.131 0.869 42 H 0.081 0.919 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 0.421 14.563 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.083 3.917 4 H 0.015 0.985 5 C -0.540 4.540 6 H 0.103 0.897 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.244 5.244 14 C -0.068 4.068 15 C -0.148 4.148 16 C -0.118 4.118 17 C -0.062 4.062 18 C -0.149 4.149 19 C 0.024 3.976 20 O -0.301 6.301 21 C 0.026 3.974 22 O -0.301 6.301 23 C -0.134 4.134 24 C -0.045 4.045 25 C -0.044 4.044 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.146 0.854 39 H 0.237 0.763 40 H 0.238 0.762 41 H 0.149 0.851 42 H 0.099 0.901 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.650 0.218 15.142 15.577 hybrid contribution 0.549 -0.798 -0.798 1.255 sum -3.101 -0.580 14.344 14.687 Atomic orbital electron populations 1.21467 0.95278 0.98104 1.03381 1.21923 0.97674 0.98029 0.98256 1.19686 0.92338 0.90602 0.89096 0.98502 1.20912 1.32108 1.13319 0.87648 0.89716 1.24880 0.95602 0.96688 0.95695 1.69869 1.45552 1.40508 0.97649 0.86958 0.80880 0.84042 0.76969 1.20425 1.22514 1.19441 1.60629 1.61530 1.01804 1.00456 1.21504 0.95374 0.88292 1.01639 1.21375 1.01782 0.98942 0.92698 1.20903 0.98832 0.94717 0.97367 1.19602 0.96382 0.94996 0.95229 1.21187 0.97422 0.98182 0.98071 1.18714 0.93691 0.91696 0.93483 1.84895 1.20202 1.92735 1.32275 1.18738 0.95881 0.86285 0.96482 1.84888 1.39652 1.46683 1.58870 1.21273 0.96165 0.99606 0.96378 1.19674 0.97168 0.91845 0.95828 1.21317 0.92926 1.00523 0.89595 0.96051 0.92114 0.91725 0.93500 0.94784 0.92602 0.96850 0.88193 0.91191 0.91600 0.91443 0.90943 0.85369 0.76317 0.76171 0.85088 0.90078 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 9.50 37.16 0.35 -2.12 16 2 C -0.12 -2.52 4.88 -26.73 -0.13 -2.65 16 3 C 0.19 4.20 1.37 -68.86 -0.09 4.11 16 4 H 0.00 -0.06 7.20 -51.93 -0.37 -0.43 16 5 C -0.50 -13.03 7.25 -34.44 -0.25 -13.28 16 6 H 0.09 2.39 6.56 -52.49 -0.34 2.05 16 7 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 8 N -0.90 -26.25 13.96 55.43 0.77 -25.48 16 9 Si 0.88 21.22 24.40 -169.99 -4.15 17.07 16 10 H -0.28 -6.56 6.84 56.52 0.39 -6.17 16 11 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.52 -9.87 3.24 -231.09 -0.75 -10.62 16 14 C 0.06 1.07 4.72 -5.33 -0.03 1.05 16 15 C -0.11 -1.59 5.79 -27.37 -0.16 -1.75 16 16 C -0.08 -1.04 5.49 -27.39 -0.15 -1.19 16 17 C -0.06 -0.86 5.00 -104.57 -0.52 -1.39 16 18 C -0.13 -1.70 9.63 -39.41 -0.38 -2.08 16 19 C 0.07 0.93 6.72 -39.09 -0.26 0.67 16 20 O -0.49 -5.86 13.29 -34.26 -0.46 -6.32 16 21 C 0.07 0.99 6.72 -39.09 -0.26 0.73 16 22 O -0.49 -6.20 13.29 -34.26 -0.46 -6.66 16 23 C -0.12 -1.67 9.62 -39.40 -0.38 -2.05 16 24 C -0.04 -0.67 5.42 -104.53 -0.57 -1.23 16 25 C 0.08 1.38 4.98 -4.59 -0.02 1.36 16 26 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.06 1.16 7.36 -51.93 -0.38 0.78 16 28 H 0.06 1.44 7.48 -51.93 -0.39 1.05 16 29 H 0.05 1.05 3.23 -51.93 -0.17 0.88 16 30 H 0.03 0.63 6.10 -51.93 -0.32 0.31 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.01 0.24 7.73 -51.93 -0.40 -0.17 16 33 H 0.10 2.08 5.51 -51.93 -0.29 1.79 16 34 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 35 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.07 0.73 7.92 -51.93 -0.41 0.31 16 37 H 0.07 0.93 6.96 -51.92 -0.36 0.57 16 38 H 0.13 1.43 7.98 -52.49 -0.42 1.01 16 39 H 0.38 2.66 9.06 45.56 0.41 3.07 16 40 H 0.38 3.00 9.06 45.56 0.41 3.42 16 41 H 0.13 1.81 7.97 -52.49 -0.42 1.40 16 42 H 0.08 1.32 5.28 -51.93 -0.27 1.05 16 43 H 0.04 0.68 6.80 -51.93 -0.35 0.33 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -30.89 325.86 -7.58 -38.46 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.51 Total: 6.55 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.95 Total: -17.92 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.02 Total: -36.10 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.91 Total: -12.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.15 Total: 17.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.89 -7.58 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.519 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds