Wall clock time and date at job start Tue Mar 31 2020 07:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 H 1.08992 * 109.47334 * 177.29973 * 3 2 1 5 5 C 1.50703 * 109.46662 * 297.29531 * 3 2 1 6 6 H 1.08001 * 119.99462 * 120.00449 * 5 3 2 7 7 C 1.37874 * 120.00146 * 300.00267 * 5 3 2 8 8 N 1.31519 * 120.00084 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00167 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46869 * 90.00093 * 9 7 5 11 11 H 1.48500 * 109.47104 * 210.00485 * 9 7 5 12 12 H 1.48497 * 109.46769 * 330.00573 * 9 7 5 13 13 N 1.46899 * 109.47081 * 57.29331 * 3 2 1 14 14 C 1.45528 * 110.99661 * 186.49620 * 13 3 2 15 15 C 1.51491 * 114.57301 * 165.47037 * 14 13 3 16 16 C 1.53245 * 110.72446 * 67.79076 * 15 14 13 17 17 C 1.51438 * 108.16902 * 275.45697 * 16 15 14 18 18 C 1.38329 * 119.75936 * 249.19901 * 17 16 15 19 19 C 1.38617 * 119.63620 * 179.87084 * 18 17 16 20 20 O 1.35992 * 120.04746 * 180.02562 * 19 18 17 21 21 C 1.39192 * 119.89789 * 359.97438 * 19 18 17 22 22 O 1.35993 * 120.03562 * 180.02562 * 21 19 18 23 23 C 1.38603 * 119.93273 * 0.05696 * 21 19 18 24 24 C 1.37288 * 119.74970 * 69.17262 * 17 16 15 25 25 C 1.46901 * 110.99633 * 60.33938 * 13 3 2 26 26 H 1.09007 * 109.47409 * 185.23242 * 1 2 3 27 27 H 1.09003 * 109.47236 * 305.22461 * 1 2 3 28 28 H 1.08991 * 109.47491 * 65.22785 * 1 2 3 29 29 H 1.08999 * 109.46831 * 239.99684 * 2 1 3 30 30 H 1.09000 * 109.46809 * 120.00305 * 2 1 3 31 31 H 0.96994 * 120.00212 * 179.97438 * 8 7 5 32 32 H 1.09004 * 108.45936 * 286.81928 * 14 13 3 33 33 H 1.08997 * 108.45807 * 44.17457 * 14 13 3 34 34 H 1.09006 * 109.25148 * 307.46126 * 15 14 13 35 35 H 1.09007 * 109.21867 * 188.10140 * 15 14 13 36 36 H 1.09005 * 109.72560 * 155.78682 * 16 15 14 37 37 H 1.09009 * 109.72227 * 35.12399 * 16 15 14 38 38 H 1.07994 * 120.18036 * 359.89089 * 18 17 16 39 39 H 0.96695 * 114.00246 * 90.00387 * 20 19 18 40 40 H 0.96693 * 114.00191 * 89.99451 * 22 21 19 41 41 H 1.08000 * 120.16695 * 180.02562 * 23 21 19 42 42 H 1.08995 * 109.62127 * 331.56296 * 25 13 3 43 43 H 1.09005 * 109.61911 * 92.10853 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4428 0.0484 5 6 1.5932 2.1332 -1.2627 6 1 0.9688 3.0126 -1.2051 7 6 1.9814 1.6425 -2.4913 8 7 1.5918 2.2456 -3.5932 9 14 3.0619 0.1220 -2.5908 10 1 2.2061 -1.0899 -2.6550 11 1 3.9086 0.1952 -3.8086 12 1 3.9298 0.0520 -1.3879 13 7 1.4977 2.1536 1.1654 14 6 1.8368 3.5680 1.1174 15 6 1.0456 4.4383 2.0722 16 6 1.4156 4.1240 3.5257 17 6 0.5861 2.9408 3.9789 18 6 -0.4080 3.1208 4.9238 19 6 -1.1675 2.0365 5.3348 20 8 -2.1473 2.2040 6.2628 21 6 -0.9264 0.7762 4.7953 22 8 -1.6702 -0.2894 5.1961 23 6 0.0729 0.6083 3.8497 24 6 0.8261 1.6975 3.4484 25 6 1.9203 1.5116 2.4173 26 1 -0.3634 -1.0234 0.0937 27 1 -0.3634 0.5928 0.8395 28 1 -0.3634 0.4306 -0.9330 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8652 1.9007 -4.4575 32 1 2.8966 3.6769 1.3479 33 1 1.6694 3.9288 0.1026 34 1 -0.0192 4.2566 1.9256 35 1 1.2619 5.4865 1.8653 36 1 1.1997 4.9873 4.1552 37 1 2.4753 3.8767 3.5903 38 1 -0.5916 4.1008 5.3387 39 1 -3.0127 2.4160 5.8872 40 1 -2.4675 -0.4334 4.6683 41 1 0.2629 -0.3678 3.4283 42 1 2.0846 0.4478 2.2458 43 1 2.8409 1.9741 2.7732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:18 Heat of formation + Delta-G solvation = -71.767945 kcal Electronic energy + Delta-G solvation = -24514.233495 eV Core-core repulsion = 21137.965443 eV Total energy + Delta-G solvation = -3376.268052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48247 -39.82516 -37.84961 -37.72415 -35.52676 -34.35024 -33.07446 -31.54815 -30.57467 -28.79009 -26.61556 -25.75039 -24.78041 -23.50684 -22.25596 -21.43457 -20.86438 -19.53068 -18.53892 -18.10218 -17.74084 -17.21577 -16.71446 -16.02549 -15.88048 -15.63316 -15.59456 -15.04127 -14.69117 -14.61501 -14.42659 -14.20996 -13.93413 -13.78408 -13.43268 -13.03331 -12.81883 -12.74270 -12.55720 -12.45003 -12.16437 -12.01091 -11.95392 -11.70337 -11.60144 -11.38016 -11.21239 -11.08032 -10.77444 -10.63926 -9.67698 -9.22410 -8.87968 -8.24292 -6.24678 0.24633 0.32513 1.30350 1.34982 1.43387 2.33215 2.52067 3.09851 3.21962 3.26269 3.32553 3.84264 3.88593 4.12602 4.13772 4.23557 4.31794 4.36851 4.42352 4.57527 4.60726 4.63284 4.64933 4.80046 4.90795 4.95583 5.01218 5.08328 5.10041 5.17146 5.28735 5.32891 5.34382 5.35697 5.39613 5.51167 5.66454 5.74082 5.76800 5.87016 6.08461 6.49526 6.65610 6.75539 6.82332 7.00411 7.38897 8.91436 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.005100 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.226693 B = 5489.328122 C = 6205.868675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C 0.192 3.808 4 H -0.014 1.014 5 C -0.489 4.489 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.947 5.947 9 Si 0.935 3.065 10 H -0.267 1.267 11 H -0.303 1.303 12 H -0.253 1.253 13 N -0.525 5.525 14 C 0.062 3.938 15 C -0.100 4.100 16 C -0.074 4.074 17 C -0.069 4.069 18 C -0.129 4.129 19 C 0.070 3.930 20 O -0.500 6.500 21 C 0.066 3.934 22 O -0.501 6.501 23 C -0.123 4.123 24 C -0.060 4.060 25 C 0.088 3.912 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.263 0.737 32 H 0.015 0.985 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.150 0.850 39 H 0.405 0.595 40 H 0.404 0.596 41 H 0.134 0.866 42 H 0.083 0.917 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 -0.358 17.316 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.160 4.160 3 C 0.085 3.915 4 H 0.003 0.997 5 C -0.527 4.527 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.588 5.588 9 Si 0.764 3.236 10 H -0.194 1.194 11 H -0.231 1.231 12 H -0.177 1.177 13 N -0.249 5.249 14 C -0.066 4.066 15 C -0.138 4.138 16 C -0.111 4.111 17 C -0.070 4.070 18 C -0.147 4.147 19 C 0.025 3.975 20 O -0.312 6.312 21 C 0.021 3.979 22 O -0.313 6.313 23 C -0.142 4.142 24 C -0.061 4.061 25 C -0.039 4.039 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.167 0.833 39 H 0.263 0.737 40 H 0.262 0.738 41 H 0.152 0.848 42 H 0.101 0.899 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.865 -0.565 17.922 18.342 hybrid contribution 0.485 -0.485 -1.558 1.702 sum -3.379 -1.050 16.364 16.742 Atomic orbital electron populations 1.21346 0.94621 0.99612 1.01616 1.21892 0.98243 0.96789 0.99061 1.19509 0.91562 0.91671 0.88778 0.99690 1.21098 1.30168 1.11932 0.89485 0.93375 1.25600 0.97207 0.99622 0.95409 1.70013 1.47902 1.42632 0.98250 0.86055 0.79472 0.80939 0.77148 1.19365 1.23080 1.17740 1.60591 1.61516 1.02105 1.00674 1.21481 0.96229 0.88360 1.00543 1.21272 1.00232 0.99028 0.93282 1.20875 0.98701 0.95474 0.96077 1.19747 0.96839 0.94870 0.95527 1.21385 0.96644 0.99110 0.97553 1.18817 0.94011 0.91630 0.93066 1.84834 1.21303 1.92741 1.32362 1.18808 0.95948 0.86812 0.96323 1.84830 1.40674 1.46314 1.59525 1.21334 0.96392 0.99619 0.96867 1.19579 0.97478 0.92811 0.96241 1.21307 0.93915 1.00239 0.88463 0.93255 0.91697 0.95198 0.94794 0.91664 0.92775 0.96705 0.92165 0.92425 0.89817 0.88619 0.90851 0.83274 0.73718 0.73833 0.84789 0.89913 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 9.50 71.98 0.68 -3.72 16 2 C -0.12 -4.91 4.88 30.59 0.15 -4.76 16 3 C 0.19 8.52 1.37 44.17 0.06 8.58 16 4 H -0.01 -0.66 7.20 -2.39 -0.02 -0.68 16 5 C -0.49 -26.28 7.25 25.60 0.19 -26.09 16 6 H 0.05 2.90 6.56 -2.91 -0.02 2.88 16 7 C 0.02 1.05 5.45 84.65 0.46 1.52 16 8 N -0.95 -57.69 13.96 21.45 0.30 -57.39 16 9 Si 0.94 44.08 24.40 68.60 1.67 45.76 16 10 H -0.27 -12.09 6.84 99.48 0.68 -11.41 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.25 -11.15 6.53 99.48 0.65 -10.50 16 13 N -0.52 -19.76 3.24 -885.04 -2.87 -22.63 16 14 C 0.06 2.24 4.72 86.07 0.41 2.65 16 15 C -0.10 -2.79 5.79 30.18 0.17 -2.61 16 16 C -0.07 -1.70 5.49 30.16 0.17 -1.54 16 17 C -0.07 -1.77 5.00 -19.83 -0.10 -1.87 16 18 C -0.13 -2.95 9.63 22.38 0.22 -2.73 16 19 C 0.07 1.68 6.72 22.59 0.15 1.83 16 20 O -0.50 -10.31 13.29 -79.55 -1.06 -11.37 16 21 C 0.07 1.68 6.72 22.59 0.15 1.83 16 22 O -0.50 -11.33 13.29 -79.57 -1.06 -12.39 16 23 C -0.12 -3.31 9.62 22.39 0.22 -3.09 16 24 C -0.06 -1.70 5.42 -19.80 -0.11 -1.81 16 25 C 0.09 2.74 4.98 85.81 0.43 3.17 16 26 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.06 2.42 7.36 -2.39 -0.02 2.40 16 28 H 0.03 1.33 7.48 -2.39 -0.02 1.31 16 29 H 0.03 1.46 3.23 -2.39 -0.01 1.45 16 30 H 0.06 2.22 6.10 -2.39 -0.01 2.21 16 31 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.01 0.52 7.73 -2.39 -0.02 0.50 16 33 H 0.06 2.64 5.51 -2.39 -0.01 2.63 16 34 H 0.06 1.75 7.86 -2.38 -0.02 1.73 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.10 1.68 7.92 -2.38 -0.02 1.67 16 37 H 0.07 1.70 6.96 -2.38 -0.02 1.68 16 38 H 0.15 2.73 7.98 -2.91 -0.02 2.71 16 39 H 0.40 4.29 9.06 -74.06 -0.67 3.62 16 40 H 0.40 5.24 9.06 -74.06 -0.67 4.57 16 41 H 0.13 3.41 7.97 -2.91 -0.02 3.39 16 42 H 0.08 2.52 5.28 -2.39 -0.01 2.51 16 43 H 0.05 1.47 6.80 -2.38 -0.02 1.45 16 Total: -1.00 -68.14 325.86 -0.14 -68.28 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.37 Total: 18.40 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.24 Total: -28.66 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -2.57 Total: -80.02 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -2.11 Total: -23.76 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.67 Total: 45.76 kcal Total: -68.14 -0.14 -68.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.486 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds