Wall clock time and date at job start Tue Mar 31 2020 07:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46747 * 2 1 4 4 H 1.09001 * 109.47639 * 304.99868 * 3 2 1 5 5 C 1.52997 * 109.47010 * 65.00765 * 3 2 1 6 6 C 1.53002 * 109.46659 * 185.00175 * 3 2 1 7 7 C 1.53004 * 109.47073 * 175.00303 * 6 3 2 8 8 C 1.50701 * 109.47200 * 180.02562 * 7 6 3 9 9 O 1.21293 * 120.00078 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00052 * 179.97438 * 8 7 6 11 11 C 1.39990 * 120.00220 * 175.49145 * 10 8 7 12 12 C 1.38916 * 120.00443 * 214.85522 * 11 10 8 13 13 C 1.38001 * 120.00179 * 179.76460 * 12 11 10 14 14 C 1.38914 * 119.99829 * 0.48226 * 13 12 11 15 15 O 1.35776 * 119.99993 * 179.74683 * 14 13 12 16 16 C 1.34809 * 117.00189 * 185.37092 * 15 14 13 17 17 H 1.07995 * 119.99813 * 354.95820 * 16 15 14 18 18 C 1.38635 * 120.00144 * 174.96344 * 16 15 14 19 19 N 1.31579 * 119.99754 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47078 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46956 * 119.99925 * 20 18 16 23 23 H 1.48496 * 109.47084 * 240.00189 * 20 18 16 24 24 C 1.38907 * 120.00136 * 359.77263 * 14 13 12 25 25 C 1.38001 * 120.00565 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.46852 * 299.99542 * 1 2 3 27 27 H 1.08999 * 109.47564 * 59.99596 * 1 2 3 28 28 H 1.09004 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46852 * 240.00458 * 2 1 3 30 30 H 1.08999 * 109.47564 * 120.00404 * 2 1 3 31 31 H 1.09004 * 109.46776 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47011 * 299.98921 * 5 3 2 33 33 H 1.09000 * 109.47632 * 59.99668 * 5 3 2 34 34 H 1.09006 * 109.47124 * 55.00280 * 6 3 2 35 35 H 1.09002 * 109.47492 * 295.00372 * 6 3 2 36 36 H 1.09002 * 109.46751 * 299.99879 * 7 6 3 37 37 H 1.08997 * 109.47073 * 60.00160 * 7 6 3 38 38 H 0.96998 * 120.00008 * 355.49465 * 10 8 7 39 39 H 1.08007 * 119.99927 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.00367 * 180.20754 * 13 12 11 41 41 H 0.97003 * 119.99496 * 179.97438 * 19 18 16 42 42 H 1.08002 * 119.99558 * 179.97438 * 24 14 13 43 43 H 1.07996 * 120.00293 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5648 1.4443 -0.1258 7 6 4.0645 2.8850 -0.2511 8 6 5.5663 2.8868 -0.3756 9 8 6.1770 1.8388 -0.3656 10 7 6.2309 4.0528 -0.4991 11 6 7.6306 4.0619 -0.5198 12 6 8.3271 5.1159 0.0580 13 6 9.7070 5.1224 0.0419 14 6 10.3994 4.0800 -0.5611 15 8 11.7570 4.0890 -0.5815 16 6 12.3652 3.1076 -1.2775 17 1 11.7788 2.3151 -1.7183 18 6 13.7434 3.1158 -1.4274 19 7 14.4578 4.0816 -0.8908 20 14 14.5861 1.7555 -2.3913 21 1 13.5670 0.7966 -2.8885 22 1 15.3162 2.3441 -3.5427 23 1 15.5451 1.0443 -1.5083 24 6 9.7030 3.0287 -1.1436 25 6 8.3232 3.0195 -1.1229 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8899 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1252 1.3970 33 1 2.0700 1.5874 2.1492 34 1 3.8570 0.8800 -1.0114 35 1 4.0030 0.9835 0.7595 36 1 3.6263 3.3458 -1.1365 37 1 3.7723 3.4493 0.6345 38 1 5.7394 4.8857 -0.5737 39 1 7.7886 5.9285 0.5230 40 1 10.2485 5.9401 0.4941 41 1 15.4221 4.0871 -0.9954 42 1 10.2415 2.2185 -1.6127 43 1 7.7818 2.2023 -1.5762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261126228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:13 Heat of formation + Delta-G solvation = -63.045306 kcal Electronic energy + Delta-G solvation = -22142.962229 eV Core-core repulsion = 18767.072419 eV Total energy + Delta-G solvation = -3375.889810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15931 -38.72186 -37.46852 -36.39341 -33.91655 -32.53428 -32.11783 -30.18883 -29.28733 -27.84430 -26.02372 -25.18685 -23.10469 -22.20745 -21.20255 -20.11062 -19.91789 -18.08292 -17.53486 -16.75344 -16.33722 -15.91366 -15.23446 -14.78547 -14.50440 -14.34602 -14.01986 -13.73785 -13.56048 -13.46791 -13.42253 -12.86659 -12.82060 -12.54498 -12.24175 -11.97519 -11.94143 -11.69835 -11.54133 -11.49058 -11.17435 -11.02579 -10.83396 -10.77912 -10.72178 -10.67627 -10.40574 -9.65651 -9.63317 -9.13995 -8.68188 -8.18831 -6.91783 -6.43099 -4.00527 2.10625 2.23461 2.88863 3.15177 3.16511 3.22192 3.35536 3.99306 4.44499 4.53178 4.58986 4.61074 4.85556 4.97053 5.08602 5.12118 5.13476 5.25419 5.26562 5.27792 5.39719 5.49723 5.64900 5.69097 5.73001 5.76815 5.78281 5.80980 5.82566 6.00207 6.14472 6.16676 6.20009 6.23820 6.36788 6.75129 6.87919 7.03182 7.12361 7.32879 7.45960 7.72694 7.81548 8.02407 8.42581 9.02924 9.72576 10.74952 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029776 B = 0.002537 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.116667 B =11034.352283 C =11813.793270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.502 3.498 9 O -0.528 6.528 10 N -0.663 5.663 11 C 0.033 3.967 12 C -0.094 4.094 13 C -0.179 4.179 14 C 0.146 3.854 15 O -0.177 6.177 16 C -0.389 4.389 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.221 4.221 25 C -0.065 4.065 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.401 0.599 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.269 0.731 42 H 0.130 0.870 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.747 -1.785 1.086 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.209 4.209 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.289 3.711 9 O -0.404 6.404 10 N -0.308 5.308 11 C -0.059 4.059 12 C -0.114 4.114 13 C -0.198 4.198 14 C 0.092 3.908 15 O -0.081 6.081 16 C -0.466 4.466 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.241 4.241 25 C -0.084 4.084 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.235 0.765 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.148 0.852 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.917 -2.344 1.227 24.063 hybrid contribution 0.191 -0.189 -0.492 0.560 sum -23.727 -2.533 0.735 23.873 Atomic orbital electron populations 1.21828 0.96035 1.01454 1.01768 1.21570 0.95666 0.96342 1.02259 1.21201 0.95284 0.96300 0.98366 0.91218 1.21959 1.01160 1.00493 0.97304 1.21404 0.94036 0.94722 1.03634 1.21729 0.91807 1.00294 1.04086 1.20808 0.90141 0.83719 0.76387 1.90707 1.69558 1.31342 1.48754 1.43280 1.05441 1.09378 1.72699 1.17289 0.81342 0.99720 1.07564 1.20361 0.93371 0.97966 0.99722 1.19993 0.92644 0.99621 1.07577 1.19413 0.85043 0.92942 0.93406 1.83971 1.12766 1.48348 1.62996 1.21384 0.90408 1.03169 1.31616 0.88981 1.25292 0.95414 0.98340 0.97556 1.70061 1.06731 1.31178 1.41857 0.85642 0.79350 0.79543 0.78890 1.19053 1.20154 1.20151 1.21118 0.93715 1.01212 1.08023 1.20856 0.93487 0.97401 0.96702 0.92560 0.92868 0.92960 0.91907 0.91903 0.92566 0.92605 0.92598 0.91122 0.91063 0.89121 0.88833 0.76483 0.86779 0.86079 0.92109 0.85222 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 37.16 0.36 -0.58 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.01 16 3 C -0.09 -0.67 2.39 -90.62 -0.22 -0.88 16 4 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.15 -0.99 8.70 37.16 0.32 -0.67 16 6 C -0.10 -0.94 3.97 -26.73 -0.11 -1.05 16 7 C -0.14 -1.24 5.46 -27.88 -0.15 -1.39 16 8 C 0.50 6.96 7.67 -10.99 -0.08 6.87 16 9 O -0.53 -9.65 13.42 5.55 0.07 -9.58 16 10 N -0.66 -9.00 5.34 -9.82 -0.05 -9.05 16 11 C 0.03 0.60 6.30 -83.62 -0.53 0.07 16 12 C -0.09 -1.66 9.96 -39.42 -0.39 -2.05 16 13 C -0.18 -3.77 9.99 -39.42 -0.39 -4.16 16 14 C 0.15 3.60 6.65 -39.08 -0.26 3.34 16 15 O -0.18 -5.13 9.75 0.03 0.00 -5.13 16 16 C -0.39 -11.08 9.48 30.88 0.29 -10.78 16 17 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 18 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 19 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 20 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.22 -5.09 9.16 -39.42 -0.36 -5.45 16 25 C -0.06 -1.33 8.69 -39.41 -0.34 -1.67 16 26 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 32 H 0.05 0.32 6.57 -51.93 -0.34 -0.02 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.67 6.56 -51.93 -0.34 0.33 16 38 H 0.40 3.83 8.82 -40.82 -0.36 3.47 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.13 3.01 5.63 -52.49 -0.30 2.72 16 43 H 0.12 2.55 6.22 -52.49 -0.33 2.22 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -33.10 351.79 -7.44 -40.54 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.40 Total: 5.24 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.10 Total: -18.46 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.71 Total: -33.81 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.07 Total: -14.71 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.10 -7.44 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261126228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.502 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds