Wall clock time and date at job start Tue Mar 31 2020 07:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46747 * 2 1 4 4 H 1.09001 * 109.47639 * 304.99868 * 3 2 1 5 5 C 1.52997 * 109.47010 * 65.00765 * 3 2 1 6 6 C 1.53002 * 109.46659 * 185.00175 * 3 2 1 7 7 C 1.53004 * 109.47073 * 175.00303 * 6 3 2 8 8 C 1.50701 * 109.47200 * 180.02562 * 7 6 3 9 9 O 1.21293 * 120.00078 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00052 * 179.97438 * 8 7 6 11 11 C 1.39990 * 120.00220 * 175.49145 * 10 8 7 12 12 C 1.38916 * 120.00443 * 214.85522 * 11 10 8 13 13 C 1.38001 * 120.00179 * 179.76460 * 12 11 10 14 14 C 1.38914 * 119.99829 * 0.48226 * 13 12 11 15 15 O 1.35776 * 119.99993 * 179.74683 * 14 13 12 16 16 C 1.34809 * 117.00189 * 185.37092 * 15 14 13 17 17 H 1.07995 * 119.99813 * 354.95820 * 16 15 14 18 18 C 1.38635 * 120.00144 * 174.96344 * 16 15 14 19 19 N 1.31579 * 119.99754 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47078 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46956 * 119.99925 * 20 18 16 23 23 H 1.48496 * 109.47084 * 240.00189 * 20 18 16 24 24 C 1.38907 * 120.00136 * 359.77263 * 14 13 12 25 25 C 1.38001 * 120.00565 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.46852 * 299.99542 * 1 2 3 27 27 H 1.08999 * 109.47564 * 59.99596 * 1 2 3 28 28 H 1.09004 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46852 * 240.00458 * 2 1 3 30 30 H 1.08999 * 109.47564 * 120.00404 * 2 1 3 31 31 H 1.09004 * 109.46776 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47011 * 299.98921 * 5 3 2 33 33 H 1.09000 * 109.47632 * 59.99668 * 5 3 2 34 34 H 1.09006 * 109.47124 * 55.00280 * 6 3 2 35 35 H 1.09002 * 109.47492 * 295.00372 * 6 3 2 36 36 H 1.09002 * 109.46751 * 299.99879 * 7 6 3 37 37 H 1.08997 * 109.47073 * 60.00160 * 7 6 3 38 38 H 0.96998 * 120.00008 * 355.49465 * 10 8 7 39 39 H 1.08007 * 119.99927 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.00367 * 180.20754 * 13 12 11 41 41 H 0.97003 * 119.99496 * 179.97438 * 19 18 16 42 42 H 1.08002 * 119.99558 * 179.97438 * 24 14 13 43 43 H 1.07996 * 120.00293 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5648 1.4443 -0.1258 7 6 4.0645 2.8850 -0.2511 8 6 5.5663 2.8868 -0.3756 9 8 6.1770 1.8388 -0.3656 10 7 6.2309 4.0528 -0.4991 11 6 7.6306 4.0619 -0.5198 12 6 8.3271 5.1159 0.0580 13 6 9.7070 5.1224 0.0419 14 6 10.3994 4.0800 -0.5611 15 8 11.7570 4.0890 -0.5815 16 6 12.3652 3.1076 -1.2775 17 1 11.7788 2.3151 -1.7183 18 6 13.7434 3.1158 -1.4274 19 7 14.4578 4.0816 -0.8908 20 14 14.5861 1.7555 -2.3913 21 1 13.5670 0.7966 -2.8885 22 1 15.3162 2.3441 -3.5427 23 1 15.5451 1.0443 -1.5083 24 6 9.7030 3.0287 -1.1436 25 6 8.3232 3.0195 -1.1229 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8899 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1252 1.3970 33 1 2.0700 1.5874 2.1492 34 1 3.8570 0.8800 -1.0114 35 1 4.0030 0.9835 0.7595 36 1 3.6263 3.3458 -1.1365 37 1 3.7723 3.4493 0.6345 38 1 5.7394 4.8857 -0.5737 39 1 7.7886 5.9285 0.5230 40 1 10.2485 5.9401 0.4941 41 1 15.4221 4.0871 -0.9954 42 1 10.2415 2.2185 -1.6127 43 1 7.7818 2.2023 -1.5762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261126228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:12 Heat of formation + Delta-G solvation = -83.708286 kcal Electronic energy + Delta-G solvation = -22143.858243 eV Core-core repulsion = 18767.072419 eV Total energy + Delta-G solvation = -3376.785824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49661 -40.38112 -38.46215 -37.75611 -35.36669 -34.19081 -33.20851 -31.86544 -30.19486 -29.09716 -27.37596 -26.56408 -24.20228 -23.69613 -22.58550 -21.14415 -20.71306 -19.93285 -19.16016 -18.04107 -17.91051 -16.86192 -16.32020 -16.13965 -15.76723 -15.71214 -15.48384 -15.29258 -14.80026 -14.66383 -14.42649 -14.29941 -14.00379 -13.60213 -13.49425 -13.22859 -13.15075 -12.76873 -12.72938 -12.60755 -12.47935 -12.42085 -12.12582 -11.82441 -11.45004 -11.42502 -11.35008 -11.27321 -11.10923 -10.74958 -10.50099 -9.84839 -8.61470 -8.48350 -6.15050 0.50352 0.55431 1.33858 1.40704 1.51881 1.70640 2.16303 2.21424 2.80952 3.13744 3.50496 3.72484 3.82725 3.99219 4.07709 4.11329 4.19350 4.34739 4.45412 4.47493 4.58999 4.65931 4.66850 4.74738 4.76885 4.83423 4.93425 5.07087 5.11502 5.13199 5.14581 5.22093 5.26159 5.28079 5.34360 5.37489 5.45660 5.58902 5.61544 5.62473 5.69315 6.01176 6.17252 6.60116 6.96354 7.31052 7.75827 8.74551 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029776 B = 0.002537 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.116667 B =11034.352283 C =11813.793270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.085 4.085 4 H 0.084 0.916 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.126 4.126 8 C 0.499 3.501 9 O -0.576 6.576 10 N -0.651 5.651 11 C 0.061 3.939 12 C -0.078 4.078 13 C -0.181 4.181 14 C 0.105 3.895 15 O -0.228 6.228 16 C -0.413 4.413 17 H 0.096 0.904 18 C -0.021 4.021 19 N -0.917 5.917 20 Si 1.017 2.983 21 H -0.257 1.257 22 H -0.265 1.265 23 H -0.267 1.267 24 C -0.231 4.231 25 C -0.078 4.078 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.427 0.573 39 H 0.168 0.832 40 H 0.129 0.871 41 H 0.273 0.727 42 H 0.115 0.885 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.397 -0.903 1.022 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.104 4.104 4 H 0.102 0.898 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.165 4.165 8 C 0.289 3.711 9 O -0.455 6.455 10 N -0.299 5.299 11 C -0.033 4.033 12 C -0.098 4.098 13 C -0.200 4.200 14 C 0.054 3.946 15 O -0.134 6.134 16 C -0.489 4.489 17 H 0.113 0.887 18 C -0.219 4.219 19 N -0.556 5.556 20 Si 0.837 3.163 21 H -0.180 1.180 22 H -0.190 1.190 23 H -0.192 1.192 24 C -0.251 4.251 25 C -0.098 4.098 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.266 0.734 39 H 0.186 0.814 40 H 0.147 0.853 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.667 -1.429 1.168 27.728 hybrid contribution 0.930 -0.431 -0.401 1.101 sum -26.737 -1.860 0.767 26.812 Atomic orbital electron populations 1.21806 0.94945 1.01741 1.02317 1.21593 0.96624 0.96500 1.01490 1.21146 0.93375 0.96400 0.99461 0.89791 1.21968 1.01818 1.00838 0.96284 1.21374 0.95685 0.94923 1.01759 1.21781 0.87443 1.00385 1.06919 1.21806 0.92142 0.82677 0.74496 1.90709 1.70947 1.33202 1.50608 1.43261 1.03379 1.10969 1.72243 1.17455 0.83781 0.97971 1.04070 1.20808 0.91927 0.98888 0.98151 1.20349 0.94284 0.98749 1.06640 1.19946 0.84228 0.94881 0.95511 1.83932 1.14807 1.49440 1.65236 1.21791 0.91223 1.03684 1.32229 0.88667 1.26540 0.95721 1.01121 0.98527 1.70187 1.07192 1.33796 1.44378 0.84552 0.78128 0.76199 0.77464 1.18046 1.18971 1.19183 1.21104 0.94886 1.00716 1.08351 1.20935 0.92503 0.98706 0.97704 0.91974 0.92274 0.92919 0.92685 0.92812 0.91335 0.91649 0.93567 0.92979 0.93269 0.85782 0.85929 0.73395 0.81427 0.85313 0.91766 0.86763 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.67 71.98 0.70 -0.83 16 2 C -0.12 -1.61 5.40 30.60 0.17 -1.45 16 3 C -0.09 -0.99 2.39 -10.79 -0.03 -1.02 16 4 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 5 C -0.15 -1.47 8.70 71.98 0.63 -0.85 16 6 C -0.10 -1.67 3.97 30.60 0.12 -1.55 16 7 C -0.13 -1.71 5.46 29.85 0.16 -1.55 16 8 C 0.50 12.31 7.67 87.66 0.67 12.98 16 9 O -0.58 -20.51 13.42 -3.07 -0.04 -20.55 16 10 N -0.65 -14.93 5.34 -303.37 -1.62 -16.55 16 11 C 0.06 2.03 6.30 38.17 0.24 2.27 16 12 C -0.08 -2.49 9.96 22.38 0.22 -2.27 16 13 C -0.18 -7.52 9.99 22.38 0.22 -7.30 16 14 C 0.10 5.38 6.65 22.59 0.15 5.53 16 15 O -0.23 -13.96 9.75 -22.82 -0.22 -14.18 16 16 C -0.41 -24.86 9.48 67.91 0.64 -24.22 16 17 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 18 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 19 N -0.92 -56.88 13.67 21.61 0.30 -56.58 16 20 Si 1.02 44.28 29.55 68.60 2.03 46.31 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 C -0.23 -11.06 9.16 22.37 0.20 -10.86 16 25 C -0.08 -3.22 8.69 22.38 0.19 -3.02 16 26 H 0.06 0.56 6.57 -2.39 -0.02 0.54 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.50 6.56 -2.38 -0.02 0.48 16 32 H 0.06 0.53 6.57 -2.39 -0.02 0.52 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 35 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.12 1.06 6.56 -2.39 -0.02 1.05 16 38 H 0.43 5.65 8.82 -92.71 -0.82 4.83 16 39 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 40 H 0.13 5.10 8.06 -2.91 -0.02 5.07 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.11 5.69 5.63 -2.91 -0.02 5.67 16 43 H 0.12 5.11 6.22 -2.91 -0.02 5.09 16 Total: -1.00 -78.60 351.79 5.40 -73.19 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.20 Total: 23.27 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 4.77 Total: -34.90 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.32 Total: -73.13 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.26 Total: -34.74 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -78.60 5.40 -73.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261126228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.516 kcal (2) G-P(sol) polarization free energy of solvation -78.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds