Wall clock time and date at job start Tue Mar 31 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47178 * 2 1 4 4 H 1.08992 * 109.47319 * 55.00407 * 3 2 1 5 5 C 1.53006 * 109.47317 * 294.99776 * 3 2 1 6 6 C 1.53002 * 109.47024 * 175.00133 * 3 2 1 7 7 C 1.53002 * 109.47386 * 184.99902 * 6 3 2 8 8 C 1.50697 * 109.47220 * 179.97438 * 7 6 3 9 9 O 1.21299 * 120.00001 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00075 * 180.02562 * 8 7 6 11 11 C 1.39992 * 120.00244 * 184.24458 * 10 8 7 12 12 C 1.38918 * 120.00007 * 324.64395 * 11 10 8 13 13 C 1.38004 * 119.99893 * 179.78797 * 12 11 10 14 14 C 1.38904 * 120.00197 * 0.48863 * 13 12 11 15 15 O 1.35776 * 120.00356 * 179.71998 * 14 13 12 16 16 C 1.34818 * 117.00192 * 185.35948 * 15 14 13 17 17 H 1.07996 * 120.00202 * 354.97078 * 16 15 14 18 18 C 1.38628 * 119.99682 * 174.96319 * 16 15 14 19 19 N 1.31572 * 120.00466 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99854 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47268 * 90.00345 * 20 18 16 22 22 H 1.48500 * 109.46899 * 210.00451 * 20 18 16 23 23 H 1.48503 * 109.46868 * 330.00029 * 20 18 16 24 24 C 1.38918 * 120.00116 * 359.74117 * 14 13 12 25 25 C 1.38002 * 119.99900 * 0.02562 * 24 14 13 26 26 H 1.08996 * 109.47430 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46585 * 300.00135 * 1 2 3 28 28 H 1.09001 * 109.47102 * 59.99783 * 1 2 3 29 29 H 1.09005 * 109.46585 * 239.99864 * 2 1 3 30 30 H 1.09001 * 109.47102 * 120.00216 * 2 1 3 31 31 H 1.08995 * 109.46920 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47063 * 300.00520 * 5 3 2 33 33 H 1.08998 * 109.46495 * 60.00524 * 5 3 2 34 34 H 1.09003 * 109.47299 * 64.99673 * 6 3 2 35 35 H 1.09004 * 109.47306 * 305.00235 * 6 3 2 36 36 H 1.08997 * 109.46914 * 60.00028 * 7 6 3 37 37 H 1.08999 * 109.46970 * 299.99985 * 7 6 3 38 38 H 0.97000 * 119.99783 * 4.51811 * 10 8 7 39 39 H 1.08001 * 120.00355 * 0.02562 * 12 11 10 40 40 H 1.07999 * 120.00394 * 180.20399 * 13 12 11 41 41 H 0.96994 * 120.00574 * 179.97438 * 19 18 16 42 42 H 1.08003 * 119.99654 * 180.02562 * 24 14 13 43 43 H 1.07999 * 119.99638 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 6 4.0646 2.8849 0.2511 8 6 5.5665 2.8866 0.3755 9 8 6.1770 1.8385 0.3654 10 7 6.2311 4.0525 0.4990 11 6 7.6307 4.0610 0.5252 12 6 8.3203 3.0222 1.1378 13 6 9.7002 3.0284 1.1598 14 6 10.3994 4.0784 0.5783 15 8 11.7568 4.0873 0.6049 16 6 12.3712 5.1862 0.1226 17 1 11.7900 5.9727 -0.3355 18 6 13.7492 5.3066 0.2150 19 7 14.4575 4.3483 0.7729 20 14 14.6005 6.8296 -0.4525 21 1 14.6882 7.8564 0.6167 22 1 15.9677 6.4723 -0.9090 23 1 13.8224 7.3705 -1.5959 24 6 9.7098 5.1195 -0.0302 25 6 8.3300 5.1110 -0.0564 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9991 3.1540 -1.3075 32 1 2.0699 1.5875 -2.1492 33 1 0.5490 2.1253 -1.3969 34 1 4.0030 0.9834 -0.7597 35 1 3.8571 0.8799 1.0113 36 1 3.6266 3.3456 1.1364 37 1 3.7724 3.4492 -0.6345 38 1 5.7396 4.8853 0.5738 39 1 7.7767 2.2078 1.5936 40 1 10.2364 2.2192 1.6331 41 1 15.4216 4.4324 0.8372 42 1 10.2535 5.9357 -0.4827 43 1 7.7939 5.9207 -0.5291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261126229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:15 Heat of formation + Delta-G solvation = -63.130307 kcal Electronic energy + Delta-G solvation = -22080.676664 eV Core-core repulsion = 18704.783168 eV Total energy + Delta-G solvation = -3375.893496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16132 -38.73100 -37.47269 -36.38400 -33.92782 -32.53063 -32.13195 -30.20118 -29.29628 -27.81227 -26.01868 -25.25574 -23.05190 -22.20521 -21.19639 -20.12339 -20.00276 -18.03664 -17.35022 -17.00994 -16.26194 -15.89376 -15.25844 -14.78757 -14.55478 -14.39309 -14.00521 -13.82721 -13.57986 -13.50993 -13.27472 -12.86521 -12.77702 -12.46518 -12.25117 -11.98832 -11.94568 -11.79155 -11.55370 -11.48933 -11.17955 -11.04151 -10.83650 -10.78571 -10.71761 -10.68046 -10.45975 -9.66929 -9.52418 -9.22834 -8.70579 -8.19248 -6.91986 -6.43548 -4.01771 2.11405 2.22214 2.88418 3.13464 3.14193 3.18727 3.35201 3.97448 4.44294 4.52933 4.58739 4.60792 4.85313 4.96872 5.08571 5.11552 5.13189 5.25395 5.26397 5.33929 5.39682 5.49500 5.56829 5.65019 5.72927 5.77474 5.79825 5.80952 5.82681 5.99923 6.14303 6.16634 6.21415 6.25384 6.30937 6.82261 6.87137 7.00873 7.18137 7.23389 7.42203 7.74237 7.80883 8.00894 8.41864 9.01686 9.72456 10.74445 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.051119 B = 0.002319 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.611676 B =12072.812224 C =12412.528907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.503 3.497 9 O -0.528 6.528 10 N -0.663 5.663 11 C 0.034 3.966 12 C -0.067 4.067 13 C -0.180 4.180 14 C 0.147 3.853 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.220 4.220 25 C -0.091 4.091 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.401 0.599 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.131 0.869 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.719 -0.968 -1.610 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.209 4.209 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.290 3.710 9 O -0.404 6.404 10 N -0.308 5.308 11 C -0.059 4.059 12 C -0.087 4.087 13 C -0.199 4.199 14 C 0.093 3.907 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.240 4.240 25 C -0.111 4.111 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.235 0.765 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.149 0.851 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.884 -1.953 -1.516 24.012 hybrid contribution 0.191 1.356 -0.373 1.419 sum -23.693 -0.598 -1.889 23.776 Atomic orbital electron populations 1.21826 0.96037 1.01453 1.01768 1.21569 0.95668 0.96338 1.02257 1.21201 0.95289 0.96301 0.98365 0.91218 1.21959 1.01162 1.00495 0.97308 1.21403 0.94034 0.94711 1.03636 1.21729 0.91808 1.00304 1.04097 1.20805 0.90138 0.83710 0.76347 1.90704 1.69575 1.31319 1.48824 1.43288 1.05450 1.09385 1.72683 1.17284 0.81347 0.99793 1.07435 1.20741 0.92979 0.97666 0.97343 1.20161 0.92920 1.00022 1.06837 1.19422 0.85020 0.93245 0.93021 1.83992 1.12682 1.39617 1.71737 1.21311 0.90372 0.96547 1.38559 0.89090 1.25290 0.95467 0.98893 0.96939 1.70045 1.07026 1.31920 1.40705 0.85711 0.78767 0.79908 0.79019 1.19905 1.20274 1.19231 1.20976 0.93403 1.01856 1.07797 1.20487 0.93855 0.97700 0.99048 0.92958 0.92877 0.92558 0.91904 0.91900 0.92569 0.92597 0.92606 0.91061 0.91108 0.89112 0.88840 0.76480 0.85383 0.86151 0.92024 0.85132 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -1.00 16 3 C -0.09 -0.66 2.39 -90.62 -0.22 -0.88 16 4 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.15 -0.99 8.70 37.16 0.32 -0.66 16 6 C -0.10 -0.93 3.97 -26.73 -0.11 -1.03 16 7 C -0.14 -1.23 5.46 -27.88 -0.15 -1.38 16 8 C 0.50 6.90 7.67 -10.99 -0.08 6.82 16 9 O -0.53 -9.52 13.44 5.54 0.07 -9.45 16 10 N -0.66 -9.00 5.34 -9.82 -0.05 -9.05 16 11 C 0.03 0.61 6.30 -83.63 -0.53 0.08 16 12 C -0.07 -1.36 8.69 -39.42 -0.34 -1.70 16 13 C -0.18 -4.03 9.98 -39.42 -0.39 -4.43 16 14 C 0.15 3.62 6.65 -39.08 -0.26 3.36 16 15 O -0.18 -5.11 9.76 0.00 0.00 -5.11 16 16 C -0.39 -10.98 9.48 30.88 0.29 -10.68 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 20 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 C -0.22 -4.79 9.16 -39.42 -0.36 -5.15 16 25 C -0.09 -1.65 9.96 -39.42 -0.39 -2.04 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.32 6.56 -51.93 -0.34 -0.02 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.67 6.56 -51.93 -0.34 0.33 16 38 H 0.40 3.88 8.82 -40.82 -0.36 3.52 16 39 H 0.13 2.53 6.25 -52.49 -0.33 2.20 16 40 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.13 2.79 5.63 -52.48 -0.30 2.50 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -32.87 351.82 -7.44 -40.31 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.40 Total: 5.49 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.10 Total: -18.30 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.71 Total: -33.74 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.07 Total: -14.56 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.87 -7.44 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261126229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.820 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds