Wall clock time and date at job start Tue Mar 31 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47178 * 2 1 4 4 H 1.08992 * 109.47319 * 55.00407 * 3 2 1 5 5 C 1.53006 * 109.47317 * 294.99776 * 3 2 1 6 6 C 1.53002 * 109.47024 * 175.00133 * 3 2 1 7 7 C 1.53002 * 109.47386 * 184.99902 * 6 3 2 8 8 C 1.50697 * 109.47220 * 179.97438 * 7 6 3 9 9 O 1.21299 * 120.00001 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00075 * 180.02562 * 8 7 6 11 11 C 1.39992 * 120.00244 * 184.24458 * 10 8 7 12 12 C 1.38918 * 120.00007 * 324.64395 * 11 10 8 13 13 C 1.38004 * 119.99893 * 179.78797 * 12 11 10 14 14 C 1.38904 * 120.00197 * 0.48863 * 13 12 11 15 15 O 1.35776 * 120.00356 * 179.71998 * 14 13 12 16 16 C 1.34818 * 117.00192 * 185.35948 * 15 14 13 17 17 H 1.07996 * 120.00202 * 354.97078 * 16 15 14 18 18 C 1.38628 * 119.99682 * 174.96319 * 16 15 14 19 19 N 1.31572 * 120.00466 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99854 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47268 * 90.00345 * 20 18 16 22 22 H 1.48500 * 109.46899 * 210.00451 * 20 18 16 23 23 H 1.48503 * 109.46868 * 330.00029 * 20 18 16 24 24 C 1.38918 * 120.00116 * 359.74117 * 14 13 12 25 25 C 1.38002 * 119.99900 * 0.02562 * 24 14 13 26 26 H 1.08996 * 109.47430 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46585 * 300.00135 * 1 2 3 28 28 H 1.09001 * 109.47102 * 59.99783 * 1 2 3 29 29 H 1.09005 * 109.46585 * 239.99864 * 2 1 3 30 30 H 1.09001 * 109.47102 * 120.00216 * 2 1 3 31 31 H 1.08995 * 109.46920 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47063 * 300.00520 * 5 3 2 33 33 H 1.08998 * 109.46495 * 60.00524 * 5 3 2 34 34 H 1.09003 * 109.47299 * 64.99673 * 6 3 2 35 35 H 1.09004 * 109.47306 * 305.00235 * 6 3 2 36 36 H 1.08997 * 109.46914 * 60.00028 * 7 6 3 37 37 H 1.08999 * 109.46970 * 299.99985 * 7 6 3 38 38 H 0.97000 * 119.99783 * 4.51811 * 10 8 7 39 39 H 1.08001 * 120.00355 * 0.02562 * 12 11 10 40 40 H 1.07999 * 120.00394 * 180.20399 * 13 12 11 41 41 H 0.96994 * 120.00574 * 179.97438 * 19 18 16 42 42 H 1.08003 * 119.99654 * 180.02562 * 24 14 13 43 43 H 1.07999 * 119.99638 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 6 4.0646 2.8849 0.2511 8 6 5.5665 2.8866 0.3755 9 8 6.1770 1.8385 0.3654 10 7 6.2311 4.0525 0.4990 11 6 7.6307 4.0610 0.5252 12 6 8.3203 3.0222 1.1378 13 6 9.7002 3.0284 1.1598 14 6 10.3994 4.0784 0.5783 15 8 11.7568 4.0873 0.6049 16 6 12.3712 5.1862 0.1226 17 1 11.7900 5.9727 -0.3355 18 6 13.7492 5.3066 0.2150 19 7 14.4575 4.3483 0.7729 20 14 14.6005 6.8296 -0.4525 21 1 14.6882 7.8564 0.6167 22 1 15.9677 6.4723 -0.9090 23 1 13.8224 7.3705 -1.5959 24 6 9.7098 5.1195 -0.0302 25 6 8.3300 5.1110 -0.0564 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9991 3.1540 -1.3075 32 1 2.0699 1.5875 -2.1492 33 1 0.5490 2.1253 -1.3969 34 1 4.0030 0.9834 -0.7597 35 1 3.8571 0.8799 1.0113 36 1 3.6266 3.3456 1.1364 37 1 3.7724 3.4492 -0.6345 38 1 5.7396 4.8853 0.5738 39 1 7.7767 2.2078 1.5936 40 1 10.2364 2.2192 1.6331 41 1 15.4216 4.4324 0.8372 42 1 10.2535 5.9357 -0.4827 43 1 7.7939 5.9207 -0.5291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261126229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:15 Heat of formation + Delta-G solvation = -83.516168 kcal Electronic energy + Delta-G solvation = -22081.560662 eV Core-core repulsion = 18704.783168 eV Total energy + Delta-G solvation = -3376.777493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49186 -40.38636 -38.45768 -37.74569 -35.37157 -34.17023 -33.19965 -31.87887 -30.18885 -29.06478 -27.40047 -26.56292 -24.11028 -23.73896 -22.57168 -21.25769 -20.70845 -19.86534 -18.96736 -18.37085 -17.70609 -16.81867 -16.36396 -16.16511 -15.84742 -15.70453 -15.48381 -15.20924 -14.86157 -14.52803 -14.32980 -14.30021 -14.08464 -13.59385 -13.46936 -13.26855 -13.12028 -12.77082 -12.70367 -12.60175 -12.49369 -12.42327 -12.11739 -11.81549 -11.44190 -11.36187 -11.32006 -11.26680 -11.09301 -10.74821 -10.52857 -9.85363 -8.61432 -8.45375 -6.13161 0.50700 0.54627 1.36733 1.45475 1.54736 1.70927 2.18246 2.21869 2.82575 3.15424 3.51130 3.72693 3.83370 3.99615 4.05047 4.12433 4.18826 4.35145 4.45213 4.48677 4.59719 4.61737 4.69724 4.74580 4.77372 4.84123 4.93799 5.07034 5.12054 5.15065 5.18936 5.22369 5.26575 5.28485 5.30935 5.37908 5.47612 5.56779 5.61486 5.61974 5.68258 6.02549 6.17609 6.59987 6.98522 7.30682 7.79391 8.77905 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.051119 B = 0.002319 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.611676 B =12072.812224 C =12412.528907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.086 4.086 4 H 0.084 0.916 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.126 4.126 8 C 0.500 3.500 9 O -0.575 6.575 10 N -0.652 5.652 11 C 0.061 3.939 12 C -0.075 4.075 13 C -0.193 4.193 14 C 0.107 3.893 15 O -0.232 6.232 16 C -0.413 4.413 17 H 0.107 0.893 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.022 2.978 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.250 1.250 24 C -0.221 4.221 25 C -0.080 4.080 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.426 0.574 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.272 0.728 42 H 0.133 0.867 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.460 1.703 -2.599 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.104 4.104 4 H 0.102 0.898 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.166 4.166 8 C 0.290 3.710 9 O -0.454 6.454 10 N -0.299 5.299 11 C -0.033 4.033 12 C -0.095 4.095 13 C -0.213 4.213 14 C 0.056 3.944 15 O -0.139 6.139 16 C -0.489 4.489 17 H 0.124 0.876 18 C -0.224 4.224 19 N -0.561 5.561 20 Si 0.841 3.159 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.173 1.173 24 C -0.241 4.241 25 C -0.100 4.100 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.265 0.735 39 H 0.149 0.851 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.150 0.850 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.731 0.741 -2.504 27.854 hybrid contribution 0.974 0.381 -0.036 1.047 sum -26.757 1.122 -2.540 26.901 Atomic orbital electron populations 1.21804 0.94973 1.01736 1.02299 1.21592 0.96603 0.96487 1.01515 1.21146 0.93419 0.96404 0.99425 0.89802 1.21968 1.01806 1.00824 0.96323 1.21374 0.95647 0.94889 1.01817 1.21780 0.87481 1.00418 1.06888 1.21790 0.92116 0.82656 0.74474 1.90707 1.70931 1.33119 1.50621 1.43272 1.03381 1.10976 1.72272 1.17436 0.83790 0.98033 1.04022 1.20852 0.91963 0.98798 0.97887 1.20277 0.94116 0.99662 1.07209 1.19873 0.84275 0.95185 0.95073 1.83960 1.14784 1.40875 1.74274 1.21880 0.91176 0.96977 1.38853 0.87575 1.26659 0.95960 1.02621 0.97117 1.70206 1.07395 1.34888 1.43615 0.84544 0.77314 0.75196 0.78872 1.18744 1.19901 1.17313 1.21149 0.95067 1.00823 1.07046 1.20869 0.92432 0.98755 0.97897 0.92915 0.92291 0.92000 0.92806 0.92633 0.91380 0.93563 0.91670 0.93242 0.92872 0.85782 0.86023 0.73475 0.85102 0.87211 0.91902 0.84974 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 71.98 0.70 -0.82 16 2 C -0.12 -1.59 5.40 30.59 0.17 -1.42 16 3 C -0.09 -0.98 2.39 -10.79 -0.03 -1.01 16 4 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 5 C -0.15 -1.47 8.70 71.98 0.63 -0.85 16 6 C -0.10 -1.64 3.97 30.60 0.12 -1.52 16 7 C -0.13 -1.70 5.46 29.85 0.16 -1.53 16 8 C 0.50 12.19 7.67 87.66 0.67 12.86 16 9 O -0.57 -20.12 13.44 -3.09 -0.04 -20.16 16 10 N -0.65 -14.96 5.34 -303.38 -1.62 -16.58 16 11 C 0.06 2.03 6.30 38.16 0.24 2.27 16 12 C -0.07 -3.00 8.69 22.38 0.19 -2.81 16 13 C -0.19 -9.05 9.98 22.37 0.22 -8.83 16 14 C 0.11 5.47 6.65 22.59 0.15 5.62 16 15 O -0.23 -14.27 9.76 -22.91 -0.22 -14.49 16 16 C -0.41 -24.05 9.48 67.91 0.64 -23.41 16 17 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 18 C -0.03 -1.51 5.49 84.82 0.47 -1.04 16 19 N -0.92 -57.39 13.67 21.61 0.30 -57.10 16 20 Si 1.02 42.68 29.55 68.60 2.03 44.71 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 24 C -0.22 -9.46 9.16 22.38 0.20 -9.26 16 25 C -0.08 -2.63 9.96 22.38 0.22 -2.41 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.06 0.55 6.57 -2.39 -0.02 0.54 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.50 6.56 -2.39 -0.02 0.48 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.53 6.56 -2.39 -0.02 0.51 16 34 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 35 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 36 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.12 1.06 6.56 -2.39 -0.02 1.04 16 38 H 0.43 5.78 8.82 -92.71 -0.82 4.96 16 39 H 0.13 5.18 6.25 -2.91 -0.02 5.16 16 40 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.13 5.55 5.63 -2.91 -0.02 5.54 16 43 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -77.93 351.82 5.40 -72.53 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.20 Total: 25.24 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 4.76 Total: -34.15 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -1.32 Total: -73.68 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.26 Total: -34.65 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -77.93 5.40 -72.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261126229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.984 kcal (2) G-P(sol) polarization free energy of solvation -77.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds