Wall clock time and date at job start Tue Mar 31 2020 07:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46757 * 2 1 4 4 H 1.08995 * 109.47719 * 55.00391 * 3 2 1 5 5 C 1.52998 * 109.47398 * 294.99736 * 3 2 1 6 6 C 1.53007 * 109.46824 * 175.00277 * 3 2 1 7 7 H 1.08999 * 109.47360 * 59.99618 * 6 3 2 8 8 C 1.52998 * 109.46692 * 299.99892 * 6 3 2 9 9 C 1.50697 * 109.46899 * 179.97438 * 6 3 2 10 10 O 1.21289 * 120.00586 * 0.02562 * 9 6 3 11 11 N 1.34785 * 119.99723 * 179.97438 * 9 6 3 12 12 C 1.39995 * 119.99874 * 175.49938 * 11 9 6 13 13 C 1.38920 * 119.99986 * 214.85008 * 12 11 9 14 14 C 1.38005 * 119.99066 * 179.79198 * 13 12 11 15 15 C 1.38905 * 120.00481 * 0.46776 * 14 13 12 16 16 O 1.35776 * 119.99505 * 179.76841 * 15 14 13 17 17 C 1.34820 * 116.99857 * 185.36134 * 16 15 14 18 18 H 1.08003 * 119.99659 * 354.95523 * 17 16 15 19 19 C 1.38632 * 120.00137 * 174.96604 * 17 16 15 20 20 N 1.31569 * 119.99673 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99934 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46839 * 90.00360 * 21 19 17 23 23 H 1.48503 * 109.46767 * 210.00551 * 21 19 17 24 24 H 1.48502 * 109.47160 * 330.00152 * 21 19 17 25 25 C 1.38900 * 120.00373 * 359.78408 * 15 14 13 26 26 C 1.38005 * 120.00368 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47070 * 300.00138 * 1 2 3 28 28 H 1.08999 * 109.47508 * 60.00061 * 1 2 3 29 29 H 1.08991 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47013 * 119.99933 * 2 1 3 31 31 H 1.08997 * 109.47142 * 240.00623 * 2 1 3 32 32 H 1.09006 * 109.46842 * 60.00033 * 5 3 2 33 33 H 1.09001 * 109.47670 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.47452 * 300.00370 * 5 3 2 35 35 H 1.09001 * 109.47670 * 60.00467 * 8 6 3 36 36 H 1.09006 * 109.46842 * 180.02562 * 8 6 3 37 37 H 1.08995 * 109.47220 * 299.99499 * 8 6 3 38 38 H 0.97002 * 119.99983 * 355.50684 * 11 9 6 39 39 H 1.07993 * 120.00556 * 0.02647 * 13 12 11 40 40 H 1.08004 * 119.99084 * 180.23298 * 14 13 12 41 41 H 0.97006 * 119.99255 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.00115 * 179.97438 * 25 15 14 43 43 H 1.07995 * 120.00034 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9053 -0.7161 8 6 3.9695 0.7603 1.4330 9 6 4.0671 2.8652 0.1250 10 8 3.2828 3.7858 0.0336 11 7 5.3881 3.1130 0.2271 12 6 5.8633 4.4264 0.1319 13 6 7.0892 4.6795 -0.4705 14 6 7.5554 5.9748 -0.5681 15 6 6.8036 7.0242 -0.0553 16 8 7.2647 8.2979 -0.1472 17 6 6.5422 9.2562 0.4669 18 1 5.5993 9.0074 0.9313 19 6 7.0093 10.5610 0.5023 20 7 6.3039 11.4962 1.1012 21 14 8.6403 10.9912 -0.3005 22 1 8.4090 11.3753 -1.7162 23 1 9.2647 12.1266 0.4249 24 1 9.5436 9.8137 -0.2483 25 6 5.5803 6.7705 0.5517 26 6 5.1115 5.4759 0.6450 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 0.5488 2.1252 -1.3969 33 1 1.9981 3.1544 -1.3072 34 1 2.0698 1.5876 -2.1492 35 1 3.6063 -0.2674 1.4330 36 1 5.0559 0.7620 1.5228 37 1 3.5350 1.2994 2.2748 38 1 6.0094 2.3812 0.3664 39 1 7.6754 3.8633 -0.8658 40 1 8.5068 6.1720 -1.0398 41 1 6.6309 12.4091 1.1262 42 1 4.9960 7.5864 0.9508 43 1 4.1605 5.2787 1.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320041936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:43 Heat of formation + Delta-G solvation = -52.397603 kcal Electronic energy + Delta-G solvation = -22869.025516 eV Core-core repulsion = 19493.597424 eV Total energy + Delta-G solvation = -3375.428091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51448 -39.00094 -37.35466 -36.21404 -34.13183 -32.43343 -32.10864 -30.28312 -29.39804 -28.12221 -25.30855 -24.66695 -24.13351 -22.46723 -21.40705 -20.27636 -19.63067 -18.07429 -17.57149 -16.89266 -16.62582 -15.31804 -15.23502 -14.75783 -14.57457 -14.32607 -13.98767 -13.80004 -13.77641 -13.43487 -13.23344 -12.78302 -12.62580 -12.45206 -12.26631 -12.10309 -11.98652 -11.81922 -11.71254 -11.59036 -11.40279 -10.98493 -10.82486 -10.74413 -10.71288 -10.60584 -10.21467 -9.69368 -9.47933 -9.13738 -8.74992 -8.27574 -7.04984 -6.39799 -4.05668 2.00513 2.12744 2.83405 3.23749 3.25748 3.28125 3.40700 4.24737 4.41762 4.46885 4.56089 4.64555 4.85593 4.87460 5.00396 5.06001 5.12014 5.25169 5.37607 5.41067 5.52148 5.55520 5.57175 5.62969 5.67262 5.76730 5.80656 5.87209 5.98352 6.04780 6.09432 6.11801 6.26803 6.27117 6.49704 6.62461 6.77404 6.91995 7.13004 7.31162 7.57293 7.69904 7.81331 8.04350 8.38106 8.95218 9.57112 10.67877 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033670 B = 0.002951 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.406128 B = 9484.725536 C = 9936.009501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.071 4.071 4 H 0.077 0.923 5 C -0.162 4.162 6 C -0.105 4.105 7 H 0.095 0.905 8 C -0.148 4.148 9 C 0.510 3.490 10 O -0.519 6.519 11 N -0.663 5.663 12 C 0.044 3.956 13 C -0.097 4.097 14 C -0.178 4.178 15 C 0.151 3.849 16 O -0.217 6.217 17 C -0.388 4.388 18 H 0.107 0.893 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.207 4.207 26 C -0.067 4.067 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.401 0.599 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.279 0.721 42 H 0.136 0.864 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 -23.700 -1.539 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.219 4.219 6 C -0.127 4.127 7 H 0.113 0.887 8 C -0.205 4.205 9 C 0.297 3.703 10 O -0.394 6.394 11 N -0.307 5.307 12 C -0.049 4.049 13 C -0.117 4.117 14 C -0.198 4.198 15 C 0.099 3.901 16 O -0.122 6.122 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.141 4.141 20 N -0.517 5.517 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.227 4.227 26 C -0.087 4.087 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.235 0.765 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.154 0.846 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.925 -22.716 -1.664 23.303 hybrid contribution 0.884 -0.030 -0.213 0.910 sum -4.041 -22.746 -1.877 23.179 Atomic orbital electron populations 1.21808 0.95808 1.01288 1.02178 1.21668 0.96100 0.96266 1.01890 1.20950 0.92098 0.95915 0.99976 0.90472 1.22123 1.01077 1.03081 0.95580 1.21381 0.97898 0.93067 1.00342 0.88653 1.21867 1.01502 1.01062 0.96102 1.20696 0.82034 0.91461 0.76121 1.90650 1.54781 1.46172 1.47823 1.43301 1.07822 1.07641 1.71983 1.17346 0.96800 0.83618 1.07102 1.20354 0.95624 0.95988 0.99767 1.19982 1.01291 0.90359 1.08132 1.19142 0.92113 0.85003 0.93862 1.83563 1.49759 1.12444 1.66435 1.20781 1.04482 0.86798 1.34338 0.87588 1.24470 0.99145 0.94182 0.96255 1.69660 1.38511 1.02123 1.41452 0.86172 0.82825 0.78488 0.79352 1.19893 1.20836 1.18355 1.21234 0.97708 0.97121 1.06603 1.20912 0.99224 0.91289 0.97226 0.92726 0.92376 0.93019 0.91712 0.92102 0.92847 0.89662 0.93671 0.91087 0.92203 0.91886 0.76459 0.86639 0.86118 0.91063 0.84623 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.76 16 2 C -0.12 -0.90 5.19 -26.73 -0.14 -1.03 16 3 C -0.07 -0.68 1.62 -90.62 -0.15 -0.83 16 4 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 5 C -0.16 -1.79 8.63 37.16 0.32 -1.47 16 6 C -0.11 -0.97 2.33 -91.77 -0.21 -1.18 16 7 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 8 C -0.15 -1.05 8.74 37.16 0.32 -0.73 16 9 C 0.51 6.82 6.71 -10.98 -0.07 6.75 16 10 O -0.52 -8.99 11.09 5.55 0.06 -8.93 16 11 N -0.66 -8.61 5.26 -9.82 -0.05 -8.66 16 12 C 0.04 0.75 6.30 -83.62 -0.53 0.22 16 13 C -0.10 -1.60 9.96 -39.41 -0.39 -2.00 16 14 C -0.18 -3.47 9.98 -39.42 -0.39 -3.87 16 15 C 0.15 3.53 6.65 -39.09 -0.26 3.27 16 16 O -0.22 -5.76 8.58 0.00 0.00 -5.76 16 17 C -0.39 -11.08 9.94 30.88 0.31 -10.77 16 18 H 0.11 3.11 5.43 -52.48 -0.28 2.82 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.69 13.96 55.48 0.77 -24.92 16 21 Si 0.91 21.78 28.62 -169.99 -4.86 16.91 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.26 -6.22 7.11 56.52 0.40 -5.81 16 25 C -0.21 -4.67 9.16 -39.42 -0.36 -5.03 16 26 C -0.07 -1.33 8.69 -39.41 -0.34 -1.67 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.42 6.17 -51.93 -0.32 0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 33 H 0.08 1.22 5.51 -51.93 -0.29 0.93 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.39 6.32 -51.93 -0.33 0.07 16 36 H 0.06 0.36 7.47 -51.93 -0.39 -0.03 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.40 3.72 8.12 -40.82 -0.33 3.39 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.12 2.16 8.06 -52.48 -0.42 1.73 16 41 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.14 3.23 5.63 -52.49 -0.30 2.94 16 43 H 0.13 2.54 6.22 -52.49 -0.33 2.22 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -31.43 343.27 -6.72 -38.15 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.18 Total: 5.45 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.63 Total: -17.41 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.72 Total: -33.58 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.06 Total: -14.69 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.43 -6.72 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320041936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.252 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds