Wall clock time and date at job start Tue Mar 31 2020 07:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46757 * 2 1 4 4 H 1.08995 * 109.47719 * 55.00391 * 3 2 1 5 5 C 1.52998 * 109.47398 * 294.99736 * 3 2 1 6 6 C 1.53007 * 109.46824 * 175.00277 * 3 2 1 7 7 H 1.08999 * 109.47360 * 59.99618 * 6 3 2 8 8 C 1.52998 * 109.46692 * 299.99892 * 6 3 2 9 9 C 1.50697 * 109.46899 * 179.97438 * 6 3 2 10 10 O 1.21289 * 120.00586 * 0.02562 * 9 6 3 11 11 N 1.34785 * 119.99723 * 179.97438 * 9 6 3 12 12 C 1.39995 * 119.99874 * 175.49938 * 11 9 6 13 13 C 1.38920 * 119.99986 * 214.85008 * 12 11 9 14 14 C 1.38005 * 119.99066 * 179.79198 * 13 12 11 15 15 C 1.38905 * 120.00481 * 0.46776 * 14 13 12 16 16 O 1.35776 * 119.99505 * 179.76841 * 15 14 13 17 17 C 1.34820 * 116.99857 * 185.36134 * 16 15 14 18 18 H 1.08003 * 119.99659 * 354.95523 * 17 16 15 19 19 C 1.38632 * 120.00137 * 174.96604 * 17 16 15 20 20 N 1.31569 * 119.99673 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99934 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46839 * 90.00360 * 21 19 17 23 23 H 1.48503 * 109.46767 * 210.00551 * 21 19 17 24 24 H 1.48502 * 109.47160 * 330.00152 * 21 19 17 25 25 C 1.38900 * 120.00373 * 359.78408 * 15 14 13 26 26 C 1.38005 * 120.00368 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47070 * 300.00138 * 1 2 3 28 28 H 1.08999 * 109.47508 * 60.00061 * 1 2 3 29 29 H 1.08991 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47013 * 119.99933 * 2 1 3 31 31 H 1.08997 * 109.47142 * 240.00623 * 2 1 3 32 32 H 1.09006 * 109.46842 * 60.00033 * 5 3 2 33 33 H 1.09001 * 109.47670 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.47452 * 300.00370 * 5 3 2 35 35 H 1.09001 * 109.47670 * 60.00467 * 8 6 3 36 36 H 1.09006 * 109.46842 * 180.02562 * 8 6 3 37 37 H 1.08995 * 109.47220 * 299.99499 * 8 6 3 38 38 H 0.97002 * 119.99983 * 355.50684 * 11 9 6 39 39 H 1.07993 * 120.00556 * 0.02647 * 13 12 11 40 40 H 1.08004 * 119.99084 * 180.23298 * 14 13 12 41 41 H 0.97006 * 119.99255 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.00115 * 179.97438 * 25 15 14 43 43 H 1.07995 * 120.00034 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9053 -0.7161 8 6 3.9695 0.7603 1.4330 9 6 4.0671 2.8652 0.1250 10 8 3.2828 3.7858 0.0336 11 7 5.3881 3.1130 0.2271 12 6 5.8633 4.4264 0.1319 13 6 7.0892 4.6795 -0.4705 14 6 7.5554 5.9748 -0.5681 15 6 6.8036 7.0242 -0.0553 16 8 7.2647 8.2979 -0.1472 17 6 6.5422 9.2562 0.4669 18 1 5.5993 9.0074 0.9313 19 6 7.0093 10.5610 0.5023 20 7 6.3039 11.4962 1.1012 21 14 8.6403 10.9912 -0.3005 22 1 8.4090 11.3753 -1.7162 23 1 9.2647 12.1266 0.4249 24 1 9.5436 9.8137 -0.2483 25 6 5.5803 6.7705 0.5517 26 6 5.1115 5.4759 0.6450 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 0.5488 2.1252 -1.3969 33 1 1.9981 3.1544 -1.3072 34 1 2.0698 1.5876 -2.1492 35 1 3.6063 -0.2674 1.4330 36 1 5.0559 0.7620 1.5228 37 1 3.5350 1.2994 2.2748 38 1 6.0094 2.3812 0.3664 39 1 7.6754 3.8633 -0.8658 40 1 8.5068 6.1720 -1.0398 41 1 6.6309 12.4091 1.1262 42 1 4.9960 7.5864 0.9508 43 1 4.1605 5.2787 1.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320041936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:42 Heat of formation + Delta-G solvation = -71.857080 kcal Electronic energy + Delta-G solvation = -22869.869342 eV Core-core repulsion = 19493.597424 eV Total energy + Delta-G solvation = -3376.271917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72454 -40.62630 -38.67226 -37.39075 -35.48391 -34.40224 -32.97342 -31.89779 -30.20038 -29.59753 -27.21315 -25.41358 -25.11161 -24.00367 -22.83927 -21.35989 -20.60955 -19.86957 -19.25602 -18.29568 -17.90484 -16.71173 -16.09637 -16.07204 -15.81478 -15.71222 -15.60040 -15.30357 -15.06670 -14.45489 -14.32793 -14.22705 -14.04360 -13.91237 -13.41512 -13.36536 -13.23164 -12.82226 -12.70709 -12.66944 -12.50260 -12.45871 -12.10232 -12.00836 -11.65968 -11.46065 -11.42828 -11.29247 -11.11336 -10.70444 -10.38456 -9.86531 -8.67270 -8.50358 -6.22934 0.46682 0.51197 1.31938 1.36802 1.52899 1.68650 2.16337 2.28449 2.75717 3.02291 3.16100 3.63067 3.74306 3.94390 4.06647 4.08795 4.21494 4.37651 4.42382 4.45471 4.59473 4.61538 4.66902 4.72461 4.77745 4.83191 4.94959 5.00408 5.04049 5.13854 5.15987 5.19223 5.24437 5.35195 5.37290 5.39589 5.48617 5.54853 5.58727 5.67671 5.74297 5.91333 6.20234 6.57601 6.83247 7.30125 7.56036 8.61657 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033670 B = 0.002951 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.406128 B = 9484.725536 C = 9936.009501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.071 4.071 4 H 0.053 0.947 5 C -0.160 4.160 6 C -0.094 4.094 7 H 0.125 0.875 8 C -0.146 4.146 9 C 0.504 3.496 10 O -0.562 6.562 11 N -0.651 5.651 12 C 0.071 3.929 13 C -0.080 4.080 14 C -0.167 4.167 15 C 0.111 3.889 16 O -0.240 6.240 17 C -0.401 4.401 18 H 0.074 0.926 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.977 3.023 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.257 1.257 25 C -0.224 4.224 26 C -0.082 4.082 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.426 0.574 39 H 0.173 0.827 40 H 0.144 0.856 41 H 0.285 0.715 42 H 0.103 0.897 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 -28.311 -2.800 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.090 4.090 4 H 0.072 0.928 5 C -0.217 4.217 6 C -0.115 4.115 7 H 0.143 0.857 8 C -0.203 4.203 9 C 0.294 3.706 10 O -0.440 6.440 11 N -0.298 5.298 12 C -0.022 4.022 13 C -0.100 4.100 14 C -0.187 4.187 15 C 0.062 3.938 16 O -0.148 6.148 17 C -0.477 4.477 18 H 0.092 0.908 19 C -0.191 4.191 20 N -0.567 5.567 21 Si 0.798 3.202 22 H -0.191 1.191 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.244 4.244 26 C -0.103 4.103 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.265 0.735 39 H 0.191 0.809 40 H 0.162 0.838 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.824 -27.418 -2.917 27.717 hybrid contribution 0.037 1.042 0.182 1.059 sum -2.788 -26.376 -2.735 26.663 Atomic orbital electron populations 1.21832 0.96083 1.01976 1.01483 1.21630 0.95851 0.94364 1.03312 1.20945 0.92677 0.97246 0.98087 0.92834 1.22067 1.01269 1.01217 0.97142 1.21425 0.97259 0.90068 1.02788 0.85741 1.21906 1.02685 1.01801 0.93929 1.21650 0.81523 0.93013 0.74452 1.90671 1.55920 1.48077 1.49345 1.43273 1.08474 1.06467 1.71602 1.17501 0.96129 0.84824 1.03787 1.20872 0.95143 0.96230 0.97725 1.20413 1.01524 0.90298 1.06455 1.19678 0.93137 0.85046 0.95969 1.83501 1.49960 1.13258 1.68058 1.20676 1.04027 0.88100 1.34905 0.90816 1.25364 1.03027 0.93774 0.96936 1.69756 1.40637 1.02737 1.43589 0.85136 0.78024 0.78455 0.78583 1.19076 1.19230 1.18102 1.21119 0.98016 0.97575 1.07700 1.20901 0.99662 0.91268 0.98428 0.93518 0.93103 0.91599 0.90101 0.90704 0.92690 0.93327 0.92278 0.88646 0.90414 0.93454 0.73518 0.80933 0.83796 0.90543 0.87908 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.67 71.98 0.70 -1.26 16 2 C -0.11 -1.30 5.19 30.59 0.16 -1.14 16 3 C -0.07 -1.23 1.62 -10.79 -0.02 -1.25 16 4 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 5 C -0.16 -3.41 8.63 71.98 0.62 -2.79 16 6 C -0.09 -1.41 2.33 -11.54 -0.03 -1.43 16 7 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 8 C -0.15 -1.47 8.74 71.98 0.63 -0.84 16 9 C 0.50 12.47 6.71 87.65 0.59 13.06 16 10 O -0.56 -19.71 11.09 -3.06 -0.03 -19.74 16 11 N -0.65 -14.55 5.26 -303.36 -1.60 -16.15 16 12 C 0.07 2.27 6.30 38.16 0.24 2.51 16 13 C -0.08 -2.30 9.96 22.38 0.22 -2.08 16 14 C -0.17 -6.16 9.98 22.37 0.22 -5.94 16 15 C 0.11 5.32 6.65 22.59 0.15 5.47 16 16 O -0.24 -13.28 8.58 -22.92 -0.20 -13.48 16 17 C -0.40 -24.44 9.94 67.91 0.68 -23.76 16 18 H 0.07 4.81 5.43 -2.91 -0.02 4.79 16 19 C 0.01 0.41 5.49 84.83 0.47 0.88 16 20 N -0.93 -56.95 13.96 21.61 0.30 -56.65 16 21 Si 0.98 45.95 28.62 68.60 1.96 47.91 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 C -0.22 -10.81 9.16 22.37 0.20 -10.60 16 26 C -0.08 -3.37 8.69 22.38 0.19 -3.18 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.70 6.57 -2.39 -0.02 0.69 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.69 6.17 -2.39 -0.01 0.68 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 1.11 6.57 -2.38 -0.02 1.10 16 33 H 0.05 1.42 5.51 -2.39 -0.01 1.40 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 0.56 6.32 -2.39 -0.02 0.54 16 36 H 0.08 0.53 7.47 -2.38 -0.02 0.51 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.43 5.54 8.12 -92.71 -0.75 4.79 16 39 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.28 15.99 8.31 -92.70 -0.77 15.22 16 42 H 0.10 5.54 5.63 -2.91 -0.02 5.52 16 43 H 0.12 5.04 6.22 -2.91 -0.02 5.02 16 Total: -1.00 -75.74 343.27 5.74 -70.00 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.27 Total: 20.46 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 5.03 Total: -32.36 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -1.29 Total: -72.80 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.23 Total: -33.22 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.96 Total: 47.91 kcal Total: -75.74 5.74 -70.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320041936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.854 kcal (2) G-P(sol) polarization free energy of solvation -75.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds