Wall clock time and date at job start Tue Mar 31 2020 07:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47088 * 2 1 4 4 H 1.09000 * 109.47638 * 305.00013 * 3 2 1 5 5 C 1.53001 * 109.46982 * 65.00118 * 3 2 1 6 6 C 1.52997 * 109.47390 * 184.99826 * 3 2 1 7 7 H 1.08999 * 109.47286 * 300.00305 * 6 3 2 8 8 C 1.53008 * 109.47007 * 60.00011 * 6 3 2 9 9 C 1.50702 * 109.47487 * 180.02562 * 6 3 2 10 10 O 1.21288 * 119.99850 * 359.97438 * 9 6 3 11 11 N 1.34781 * 119.99820 * 180.02562 * 9 6 3 12 12 C 1.39995 * 119.99447 * 174.78408 * 11 9 6 13 13 C 1.38921 * 119.99995 * 146.31933 * 12 11 9 14 14 C 1.37996 * 119.99550 * 180.02562 * 13 12 11 15 15 C 1.38905 * 120.00581 * 0.02562 * 14 13 12 16 16 O 1.35783 * 119.99836 * 179.97438 * 15 14 13 17 17 C 1.34809 * 116.99900 * 5.91000 * 16 15 14 18 18 H 1.07996 * 120.00469 * 5.40886 * 17 16 15 19 19 C 1.38634 * 119.99894 * 185.40586 * 17 16 15 20 20 N 1.31573 * 120.00240 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00013 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47006 * 89.99845 * 21 19 17 23 23 H 1.48497 * 109.47568 * 210.00245 * 21 19 17 24 24 H 1.48504 * 109.47030 * 330.00473 * 21 19 17 25 25 C 1.38902 * 120.00110 * 0.25335 * 15 14 13 26 26 C 1.38010 * 120.00093 * 359.44714 * 25 15 14 27 27 H 1.08992 * 109.47298 * 300.00195 * 1 2 3 28 28 H 1.09007 * 109.46749 * 59.99907 * 1 2 3 29 29 H 1.08994 * 109.46841 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47409 * 240.00521 * 2 1 3 31 31 H 1.08995 * 109.47173 * 119.99953 * 2 1 3 32 32 H 1.09004 * 109.47061 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47127 * 299.99673 * 5 3 2 34 34 H 1.08995 * 109.47577 * 59.99945 * 5 3 2 35 35 H 1.09000 * 109.46778 * 300.00366 * 8 6 3 36 36 H 1.09000 * 109.46777 * 60.00575 * 8 6 3 37 37 H 1.08993 * 109.47040 * 180.02562 * 8 6 3 38 38 H 0.96993 * 120.00038 * 354.78216 * 11 9 6 39 39 H 1.07994 * 120.00083 * 359.97438 * 13 12 11 40 40 H 1.08009 * 119.99707 * 180.02562 * 14 13 12 41 41 H 0.97000 * 119.99874 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.99780 * 179.70628 * 25 15 14 43 43 H 1.07994 * 119.99984 * 180.27528 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 1 3.9995 0.9054 0.7161 8 6 3.9696 0.7603 -1.4331 9 6 4.0672 2.8652 -0.1250 10 8 3.2828 3.7858 -0.0336 11 7 5.3881 3.1129 -0.2272 12 6 5.8466 4.4312 -0.3366 13 6 7.0616 4.7934 0.2313 14 6 7.5131 6.0930 0.1238 15 6 6.7526 7.0390 -0.5516 16 8 7.1968 8.3178 -0.6568 17 6 8.4359 8.5754 -0.1923 18 1 9.0599 7.7670 0.1588 19 6 8.9090 9.8783 -0.1653 20 7 10.1184 10.1298 0.2876 21 14 7.8293 11.2768 -0.7719 22 1 7.0263 11.8083 0.3585 23 1 8.6840 12.3586 -1.3237 24 1 6.9192 10.7752 -1.8328 25 6 5.5351 6.6782 -1.1144 26 6 5.0862 5.3771 -1.0124 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.9982 3.1543 1.3072 33 1 0.5489 2.1252 1.3969 34 1 2.0698 1.5875 2.1492 35 1 3.6063 -0.2673 -1.4331 36 1 3.5351 1.2995 -2.2749 37 1 5.0559 0.7613 -1.5224 38 1 6.0210 2.3779 -0.2248 39 1 7.6522 4.0583 0.7575 40 1 8.4579 6.3746 0.5649 41 1 10.4496 11.0413 0.3061 42 1 4.9416 7.4149 -1.6355 43 1 4.1416 5.0956 -1.4538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320041938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:46 Heat of formation + Delta-G solvation = -53.811179 kcal Electronic energy + Delta-G solvation = -22819.910867 eV Core-core repulsion = 19444.421478 eV Total energy + Delta-G solvation = -3375.489388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52857 -39.01491 -37.37128 -36.22059 -34.14581 -32.43952 -32.12391 -30.31910 -29.40936 -28.11226 -25.36710 -24.68123 -24.14390 -22.37358 -21.52056 -20.28836 -19.68216 -17.91288 -17.53546 -17.17341 -16.48761 -15.38829 -15.27632 -14.77798 -14.63887 -14.34911 -14.02307 -13.77477 -13.70404 -13.41776 -13.23615 -12.79129 -12.70592 -12.32254 -12.28528 -12.11146 -12.07399 -11.83692 -11.68612 -11.67446 -11.42542 -10.99080 -10.84358 -10.76724 -10.72927 -10.62638 -10.16956 -9.73720 -9.49744 -9.21993 -8.76576 -8.29633 -7.04378 -6.41837 -4.07426 1.98734 2.10541 2.83810 3.23161 3.25391 3.27920 3.42092 4.24572 4.40255 4.46868 4.53549 4.62901 4.85987 4.90214 4.98641 5.04081 5.09022 5.24179 5.35521 5.38970 5.48638 5.50153 5.56008 5.61735 5.70332 5.75104 5.78904 5.84479 5.96694 6.01473 6.06964 6.12304 6.19260 6.24682 6.46960 6.67376 6.75024 6.92990 7.09118 7.23040 7.57934 7.66498 7.78384 8.02325 8.35727 8.93685 9.56469 10.65786 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038869 B = 0.002848 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.200401 B = 9828.555072 C =10178.164641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.070 4.070 4 H 0.077 0.923 5 C -0.162 4.162 6 C -0.106 4.106 7 H 0.095 0.905 8 C -0.147 4.147 9 C 0.510 3.490 10 O -0.521 6.521 11 N -0.663 5.663 12 C 0.047 3.953 13 C -0.094 4.094 14 C -0.205 4.205 15 C 0.151 3.849 16 O -0.217 6.217 17 C -0.389 4.389 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.177 4.177 26 C -0.070 4.070 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.401 0.599 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.279 0.721 42 H 0.120 0.880 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.988 -20.665 -1.327 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.218 4.218 6 C -0.127 4.127 7 H 0.113 0.887 8 C -0.204 4.204 9 C 0.297 3.703 10 O -0.396 6.396 11 N -0.307 5.307 12 C -0.045 4.045 13 C -0.114 4.114 14 C -0.225 4.225 15 C 0.099 3.901 16 O -0.122 6.122 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.196 4.196 26 C -0.090 4.090 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.236 0.764 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.504 -19.645 -1.322 23.875 hybrid contribution 0.250 0.197 -0.008 0.319 sum -13.253 -19.448 -1.329 23.572 Atomic orbital electron populations 1.21807 0.95820 1.01302 1.02135 1.21673 0.96082 0.96274 1.01936 1.20945 0.92113 0.95915 0.99917 0.90507 1.22120 1.01047 1.03048 0.95633 1.21376 0.97857 0.93112 1.00400 0.88710 1.21856 1.01639 1.00954 0.95995 1.20690 0.82054 0.91467 0.76050 1.90649 1.54855 1.46348 1.47786 1.43338 1.07505 1.07127 1.72738 1.17317 0.96986 0.84517 1.05711 1.20535 0.95536 0.96140 0.99185 1.21100 1.02994 0.92715 1.05675 1.19150 0.92472 0.84949 0.93557 1.83599 1.33223 1.22913 1.72428 1.20746 0.87196 0.95811 1.42658 0.87682 1.24469 0.96066 0.97576 0.95939 1.69654 1.16060 1.21902 1.44171 0.86179 0.80204 0.80447 0.80085 1.19895 1.20793 1.18291 1.20121 0.96417 0.96293 1.06810 1.20589 0.99117 0.91926 0.97391 0.92394 0.92750 0.93005 0.91688 0.92079 0.89702 0.92871 0.93645 0.91123 0.91938 0.92101 0.76401 0.86929 0.84514 0.91063 0.86160 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.71 16 2 C -0.12 -0.87 5.19 -26.73 -0.14 -1.01 16 3 C -0.07 -0.65 1.62 -90.62 -0.15 -0.80 16 4 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 5 C -0.16 -1.71 8.63 37.16 0.32 -1.39 16 6 C -0.11 -0.95 2.31 -91.77 -0.21 -1.16 16 7 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 8 C -0.15 -1.05 8.75 37.16 0.33 -0.72 16 9 C 0.51 6.67 6.60 -10.98 -0.07 6.59 16 10 O -0.52 -8.71 11.36 5.55 0.06 -8.65 16 11 N -0.66 -8.58 5.20 -9.82 -0.05 -8.63 16 12 C 0.05 0.80 6.28 -83.62 -0.52 0.28 16 13 C -0.09 -1.66 9.96 -39.42 -0.39 -2.05 16 14 C -0.21 -4.37 9.12 -39.42 -0.36 -4.73 16 15 C 0.15 3.51 6.65 -39.09 -0.26 3.26 16 16 O -0.22 -5.74 8.58 0.01 0.00 -5.74 16 17 C -0.39 -10.92 9.90 30.88 0.31 -10.61 16 18 H 0.11 2.99 5.52 -52.49 -0.29 2.70 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -25.37 13.96 55.48 0.77 -24.60 16 21 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.18 -3.66 9.98 -39.42 -0.39 -4.05 16 26 C -0.07 -1.32 8.65 -39.41 -0.34 -1.66 16 27 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 6.17 -51.93 -0.32 0.08 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.16 5.51 -51.93 -0.29 0.88 16 33 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.39 6.32 -51.93 -0.33 0.06 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.38 7.69 -51.93 -0.40 -0.02 16 38 H 0.40 3.81 8.40 -40.82 -0.34 3.47 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.14 3.03 5.71 -52.48 -0.30 2.73 16 41 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.12 2.35 8.06 -52.48 -0.42 1.92 16 43 H 0.13 2.27 6.43 -52.49 -0.34 1.93 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -30.98 344.10 -6.74 -37.72 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.22 Total: 4.86 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.63 Total: -17.09 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.72 Total: -33.23 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.06 Total: -14.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.98 -6.74 -37.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320041938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.088 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds