Wall clock time and date at job start Tue Mar 31 2020 07:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47088 * 2 1 4 4 H 1.09000 * 109.47638 * 305.00013 * 3 2 1 5 5 C 1.53001 * 109.46982 * 65.00118 * 3 2 1 6 6 C 1.52997 * 109.47390 * 184.99826 * 3 2 1 7 7 H 1.08999 * 109.47286 * 300.00305 * 6 3 2 8 8 C 1.53008 * 109.47007 * 60.00011 * 6 3 2 9 9 C 1.50702 * 109.47487 * 180.02562 * 6 3 2 10 10 O 1.21288 * 119.99850 * 359.97438 * 9 6 3 11 11 N 1.34781 * 119.99820 * 180.02562 * 9 6 3 12 12 C 1.39995 * 119.99447 * 174.78408 * 11 9 6 13 13 C 1.38921 * 119.99995 * 146.31933 * 12 11 9 14 14 C 1.37996 * 119.99550 * 180.02562 * 13 12 11 15 15 C 1.38905 * 120.00581 * 0.02562 * 14 13 12 16 16 O 1.35783 * 119.99836 * 179.97438 * 15 14 13 17 17 C 1.34809 * 116.99900 * 5.91000 * 16 15 14 18 18 H 1.07996 * 120.00469 * 5.40886 * 17 16 15 19 19 C 1.38634 * 119.99894 * 185.40586 * 17 16 15 20 20 N 1.31573 * 120.00240 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00013 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47006 * 89.99845 * 21 19 17 23 23 H 1.48497 * 109.47568 * 210.00245 * 21 19 17 24 24 H 1.48504 * 109.47030 * 330.00473 * 21 19 17 25 25 C 1.38902 * 120.00110 * 0.25335 * 15 14 13 26 26 C 1.38010 * 120.00093 * 359.44714 * 25 15 14 27 27 H 1.08992 * 109.47298 * 300.00195 * 1 2 3 28 28 H 1.09007 * 109.46749 * 59.99907 * 1 2 3 29 29 H 1.08994 * 109.46841 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47409 * 240.00521 * 2 1 3 31 31 H 1.08995 * 109.47173 * 119.99953 * 2 1 3 32 32 H 1.09004 * 109.47061 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47127 * 299.99673 * 5 3 2 34 34 H 1.08995 * 109.47577 * 59.99945 * 5 3 2 35 35 H 1.09000 * 109.46778 * 300.00366 * 8 6 3 36 36 H 1.09000 * 109.46777 * 60.00575 * 8 6 3 37 37 H 1.08993 * 109.47040 * 180.02562 * 8 6 3 38 38 H 0.96993 * 120.00038 * 354.78216 * 11 9 6 39 39 H 1.07994 * 120.00083 * 359.97438 * 13 12 11 40 40 H 1.08009 * 119.99707 * 180.02562 * 14 13 12 41 41 H 0.97000 * 119.99874 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.99780 * 179.70628 * 25 15 14 43 43 H 1.07994 * 119.99984 * 180.27528 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 1 3.9995 0.9054 0.7161 8 6 3.9696 0.7603 -1.4331 9 6 4.0672 2.8652 -0.1250 10 8 3.2828 3.7858 -0.0336 11 7 5.3881 3.1129 -0.2272 12 6 5.8466 4.4312 -0.3366 13 6 7.0616 4.7934 0.2313 14 6 7.5131 6.0930 0.1238 15 6 6.7526 7.0390 -0.5516 16 8 7.1968 8.3178 -0.6568 17 6 8.4359 8.5754 -0.1923 18 1 9.0599 7.7670 0.1588 19 6 8.9090 9.8783 -0.1653 20 7 10.1184 10.1298 0.2876 21 14 7.8293 11.2768 -0.7719 22 1 7.0263 11.8083 0.3585 23 1 8.6840 12.3586 -1.3237 24 1 6.9192 10.7752 -1.8328 25 6 5.5351 6.6782 -1.1144 26 6 5.0862 5.3771 -1.0124 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.9982 3.1543 1.3072 33 1 0.5489 2.1252 1.3969 34 1 2.0698 1.5875 2.1492 35 1 3.6063 -0.2673 -1.4331 36 1 3.5351 1.2995 -2.2749 37 1 5.0559 0.7613 -1.5224 38 1 6.0210 2.3779 -0.2248 39 1 7.6522 4.0583 0.7575 40 1 8.4579 6.3746 0.5649 41 1 10.4496 11.0413 0.3061 42 1 4.9416 7.4149 -1.6355 43 1 4.1416 5.0956 -1.4538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320041938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:45 Heat of formation + Delta-G solvation = -72.195941 kcal Electronic energy + Delta-G solvation = -22820.708090 eV Core-core repulsion = 19444.421478 eV Total energy + Delta-G solvation = -3376.286612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.71622 -40.63007 -38.67297 -37.37367 -35.47849 -34.37981 -32.95590 -31.92380 -30.16584 -29.59191 -27.23400 -25.38975 -25.07484 -23.97789 -22.85477 -21.43786 -20.59518 -19.75486 -19.17263 -18.47019 -17.78047 -16.65284 -16.41267 -16.02997 -15.77516 -15.71368 -15.54662 -15.15355 -15.05797 -14.47835 -14.35438 -14.17878 -13.97489 -13.90725 -13.49905 -13.37885 -13.23268 -12.81687 -12.70330 -12.66234 -12.52781 -12.44745 -12.08508 -11.98670 -11.64747 -11.45813 -11.41969 -11.28257 -11.11175 -10.71538 -10.40988 -9.88030 -8.65897 -8.49735 -6.20501 0.45971 0.49183 1.31509 1.34668 1.51856 1.69696 2.15917 2.28351 2.75830 3.08775 3.10629 3.63312 3.75031 3.95652 4.02038 4.08793 4.21993 4.38720 4.42647 4.45405 4.56508 4.63250 4.68920 4.71786 4.79195 4.84439 4.95711 5.01460 5.07347 5.13505 5.15748 5.17718 5.25331 5.36099 5.37312 5.40573 5.49872 5.52778 5.57666 5.67387 5.74916 5.90654 6.19463 6.57090 6.84999 7.28129 7.59546 8.61614 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038869 B = 0.002848 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.200401 B = 9828.555072 C =10178.164641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.069 4.069 4 H 0.057 0.943 5 C -0.160 4.160 6 C -0.096 4.096 7 H 0.121 0.879 8 C -0.145 4.145 9 C 0.507 3.493 10 O -0.558 6.558 11 N -0.653 5.653 12 C 0.076 3.924 13 C -0.088 4.088 14 C -0.213 4.213 15 C 0.112 3.888 16 O -0.245 6.245 17 C -0.397 4.397 18 H 0.086 0.914 19 C 0.011 3.989 20 N -0.921 5.921 21 Si 0.966 3.034 22 H -0.269 1.269 23 H -0.266 1.266 24 H -0.264 1.264 25 C -0.176 4.176 26 C -0.076 4.076 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.423 0.577 39 H 0.153 0.847 40 H 0.121 0.879 41 H 0.284 0.716 42 H 0.126 0.874 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 -23.977 -1.522 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.088 4.088 4 H 0.076 0.924 5 C -0.217 4.217 6 C -0.117 4.117 7 H 0.139 0.861 8 C -0.202 4.202 9 C 0.297 3.703 10 O -0.436 6.436 11 N -0.300 5.300 12 C -0.018 4.018 13 C -0.108 4.108 14 C -0.233 4.233 15 C 0.062 3.938 16 O -0.153 6.153 17 C -0.473 4.473 18 H 0.103 0.897 19 C -0.188 4.188 20 N -0.562 5.562 21 Si 0.789 3.211 22 H -0.194 1.194 23 H -0.191 1.191 24 H -0.189 1.189 25 C -0.196 4.196 26 C -0.096 4.096 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.262 0.738 39 H 0.170 0.830 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.144 0.856 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.869 -23.035 -1.520 27.459 hybrid contribution 0.473 0.873 0.081 0.996 sum -14.396 -22.163 -1.439 26.467 Atomic orbital electron populations 1.21827 0.95969 1.01940 1.01575 1.21638 0.95940 0.94530 1.03190 1.20934 0.92425 0.97171 0.98270 0.92436 1.22068 1.01324 1.01296 0.97001 1.21422 0.97435 0.90226 1.02624 0.86096 1.21890 1.02522 1.01747 0.94079 1.21575 0.81364 0.93001 0.74386 1.90660 1.55773 1.48040 1.49086 1.43340 1.08316 1.05917 1.72443 1.17447 0.95804 0.86128 1.02435 1.20817 0.95986 0.95317 0.98663 1.21154 1.02350 0.94161 1.05589 1.19585 0.94002 0.84539 0.95634 1.83540 1.32521 1.24734 1.74486 1.20715 0.88112 0.95723 1.42744 0.89676 1.25226 0.97334 0.99801 0.96392 1.69726 1.17492 1.22716 1.46263 0.85274 0.78572 0.77813 0.79434 1.19386 1.19066 1.18853 1.20303 0.95563 0.97434 1.06260 1.20757 0.99640 0.91527 0.97709 0.93030 0.93336 0.91757 0.90209 0.90931 0.93046 0.92564 0.92533 0.88793 0.93178 0.90803 0.73808 0.82964 0.86144 0.90597 0.85586 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.67 71.98 0.70 -1.09 16 2 C -0.12 -1.23 5.19 30.59 0.16 -1.07 16 3 C -0.07 -1.11 1.62 -10.79 -0.02 -1.13 16 4 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 5 C -0.16 -3.14 8.63 71.98 0.62 -2.52 16 6 C -0.10 -1.37 2.31 -11.54 -0.03 -1.39 16 7 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 8 C -0.15 -1.45 8.75 71.98 0.63 -0.82 16 9 C 0.51 11.87 6.60 87.66 0.58 12.45 16 10 O -0.56 -17.97 11.36 -3.05 -0.03 -18.00 16 11 N -0.65 -14.63 5.20 -303.37 -1.58 -16.20 16 12 C 0.08 2.41 6.28 38.16 0.24 2.65 16 13 C -0.09 -2.92 9.96 22.38 0.22 -2.70 16 14 C -0.21 -9.18 9.12 22.37 0.20 -8.98 16 15 C 0.11 5.34 6.65 22.59 0.15 5.49 16 16 O -0.25 -13.53 8.58 -22.89 -0.20 -13.72 16 17 C -0.40 -23.35 9.90 67.91 0.67 -22.68 16 18 H 0.09 5.16 5.52 -2.91 -0.02 5.15 16 19 C 0.01 0.64 5.49 84.83 0.47 1.10 16 20 N -0.92 -54.94 13.96 21.61 0.30 -54.63 16 21 Si 0.97 46.08 28.62 68.60 1.96 48.04 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 25 C -0.18 -7.33 9.98 22.37 0.22 -7.11 16 26 C -0.08 -2.77 8.65 22.38 0.19 -2.58 16 27 H 0.05 0.65 6.56 -2.39 -0.02 0.63 16 28 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.64 6.17 -2.39 -0.01 0.62 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 1.38 5.51 -2.39 -0.01 1.37 16 33 H 0.06 1.03 6.57 -2.39 -0.02 1.02 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.09 0.56 6.32 -2.39 -0.02 0.54 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.57 7.69 -2.39 -0.02 0.55 16 38 H 0.42 6.03 8.40 -92.71 -0.78 5.26 16 39 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.12 5.58 5.71 -2.91 -0.02 5.57 16 41 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 43 H 0.13 4.68 6.43 -2.91 -0.02 4.66 16 Total: -1.00 -70.77 344.10 5.71 -65.06 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.24 Total: 19.83 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 5.01 Total: -30.37 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -1.27 Total: -70.84 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.23 Total: -31.73 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.96 Total: 48.04 kcal Total: -70.77 5.71 -65.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320041938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.138 kcal (2) G-P(sol) polarization free energy of solvation -70.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds