Wall clock time and date at job start Tue Mar 31 2020 07:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46764 * 2 1 4 4 C 1.53006 * 109.47013 * 240.00176 * 2 1 3 5 5 O 1.42899 * 109.47292 * 120.00072 * 2 1 3 6 6 C 1.35900 * 116.99961 * 62.71745 * 5 2 1 7 7 C 1.38730 * 120.05360 * 175.90962 * 6 5 2 8 8 C 1.38151 * 119.94326 * 180.30035 * 7 6 5 9 9 C 1.38266 * 120.05267 * 359.42601 * 8 7 6 10 10 C 1.50698 * 119.94385 * 180.29725 * 9 8 7 11 11 C 1.52995 * 109.47440 * 270.29768 * 10 9 8 12 12 N 1.46501 * 109.47414 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00046 * 180.02562 * 12 11 10 14 14 O 1.21682 * 120.00347 * 359.97438 * 13 12 11 15 15 C 1.46374 * 119.99849 * 180.02562 * 13 12 11 16 16 H 1.08002 * 120.00120 * 5.98956 * 15 13 12 17 17 C 1.40053 * 119.99978 * 185.99623 * 15 13 12 18 18 N 1.30667 * 119.99719 * 6.03047 * 17 15 13 19 19 Si 1.86797 * 119.99820 * 186.02849 * 17 15 13 20 20 H 1.48503 * 109.47049 * 94.99571 * 19 17 15 21 21 H 1.48503 * 109.47022 * 214.98717 * 19 17 15 22 22 H 1.48496 * 109.47496 * 334.99481 * 19 17 15 23 23 C 1.38267 * 120.11388 * 0.59991 * 9 8 7 24 24 C 1.38150 * 120.05411 * 359.67546 * 23 9 8 25 25 H 1.09004 * 109.47032 * 318.01734 * 1 2 3 26 26 H 1.08995 * 109.47181 * 78.02307 * 1 2 3 27 27 H 1.09008 * 109.46881 * 198.02091 * 1 2 3 28 28 H 1.09000 * 109.46825 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47231 * 299.99900 * 3 2 1 30 30 H 1.08997 * 109.47444 * 60.00691 * 3 2 1 31 31 H 1.09002 * 109.46949 * 288.14675 * 4 2 1 32 32 H 1.08995 * 109.46927 * 48.14730 * 4 2 1 33 33 H 1.08998 * 109.46977 * 168.14773 * 4 2 1 34 34 H 1.08002 * 120.03393 * 0.02965 * 7 6 5 35 35 H 1.08000 * 119.97654 * 179.70392 * 8 7 6 36 36 H 1.09000 * 109.47285 * 30.30609 * 10 9 8 37 37 H 1.09008 * 109.47256 * 150.29649 * 10 9 8 38 38 H 1.08999 * 109.47193 * 299.99988 * 11 10 9 39 39 H 1.09006 * 109.46589 * 60.00371 * 11 10 9 40 40 H 0.97000 * 119.99560 * 0.02562 * 12 11 10 41 41 H 0.96999 * 119.99755 * 180.02562 * 18 17 15 42 42 H 1.07996 * 119.97621 * 179.69860 * 23 9 8 43 43 H 1.07995 * 120.03064 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1667 6 6 1.6888 -1.9890 1.2926 7 6 2.1889 -2.7258 2.3564 8 6 1.8696 -4.0643 2.4787 9 6 1.0427 -4.6667 1.5486 10 6 0.6906 -6.1253 1.6881 11 6 1.7265 -6.9732 0.9475 12 7 1.3839 -8.3912 1.0827 13 6 2.1614 -9.3301 0.5079 14 8 3.1477 -9.0002 -0.1238 15 6 1.8186 -10.7468 0.6424 16 1 0.8931 -11.0357 1.1182 17 6 2.6910 -11.7277 0.1543 18 7 3.8620 -11.3860 -0.3140 19 14 2.1804 -13.5245 0.1729 20 1 1.6009 -13.8880 -1.1452 21 1 3.3683 -14.3739 0.4425 22 1 1.1662 -13.7400 1.2359 23 6 0.5434 -3.9347 0.4872 24 6 0.8643 -2.5973 0.3573 25 1 -0.3633 0.7639 0.6874 26 1 -0.3633 0.2132 -1.0052 27 1 -0.3633 -0.9773 0.3179 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.8594 -1.7916 -1.1501 32 1 1.5147 -0.3438 -2.1266 33 1 3.1094 -0.5421 -1.3612 34 1 2.8309 -2.2545 3.0859 35 1 2.2625 -4.6396 3.3040 36 1 0.6848 -6.3984 2.7434 37 1 -0.2966 -6.3032 1.2615 38 1 1.7322 -6.7002 -0.1077 39 1 2.7137 -6.7954 1.3742 40 1 0.5974 -8.6542 1.5858 41 1 4.4660 -12.0654 -0.6524 42 1 -0.0984 -4.4087 -0.2407 43 1 0.4737 -2.0258 -0.4717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320381406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:10 Heat of formation + Delta-G solvation = -51.174697 kcal Electronic energy + Delta-G solvation = -22481.507832 eV Core-core repulsion = 19106.132770 eV Total energy + Delta-G solvation = -3375.375062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93127 -38.37409 -37.15512 -34.62871 -33.85175 -32.41239 -31.33625 -30.94748 -28.24658 -27.74580 -27.29176 -25.88504 -23.16831 -22.72825 -21.21534 -20.33666 -19.63337 -17.48133 -17.16247 -16.51875 -15.65263 -15.50687 -15.23122 -14.78000 -14.56119 -14.23235 -14.09952 -13.95880 -13.81353 -13.44845 -13.12597 -12.73359 -12.54450 -12.30303 -12.25522 -12.18102 -11.98359 -11.94157 -11.55059 -11.31052 -11.08894 -11.07901 -10.85455 -10.65329 -10.62470 -10.41122 -10.39549 -10.18912 -8.90936 -8.82090 -7.99378 -7.56734 -7.45716 -6.18006 -4.60218 1.35500 1.45356 3.03133 3.15773 3.22710 3.26252 3.75505 4.13350 4.37989 4.44416 4.58880 4.62128 4.77252 4.81648 4.83830 5.15361 5.18719 5.20255 5.30929 5.33991 5.36361 5.42816 5.44639 5.46361 5.64845 5.66066 5.70069 5.78400 5.85381 5.86266 5.92445 5.99015 6.07504 6.32953 6.38409 6.51500 6.66126 6.81044 6.81646 7.40589 7.46350 7.97371 8.14142 8.36824 9.05472 9.58147 10.63379 10.81909 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038120 B = 0.002479 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.349430 B =11293.786381 C =11470.725914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.109 3.891 3 C -0.137 4.137 4 C -0.204 4.204 5 O -0.309 6.309 6 C 0.124 3.876 7 C -0.152 4.152 8 C -0.076 4.076 9 C -0.106 4.106 10 C -0.087 4.087 11 C 0.139 3.861 12 N -0.769 5.769 13 C 0.556 3.444 14 O -0.583 6.583 15 C -0.548 4.548 16 H 0.068 0.932 17 C 0.088 3.912 18 N -0.770 5.770 19 Si 0.908 3.092 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.265 1.265 23 C -0.080 4.080 24 C -0.220 4.220 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.380 0.620 41 H 0.268 0.732 42 H 0.124 0.876 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 22.319 2.313 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.071 3.929 3 C -0.194 4.194 4 C -0.260 4.260 5 O -0.224 6.224 6 C 0.079 3.921 7 C -0.171 4.171 8 C -0.094 4.094 9 C -0.107 4.107 10 C -0.125 4.125 11 C 0.014 3.986 12 N -0.425 5.425 13 C 0.359 3.641 14 O -0.466 6.466 15 C -0.585 4.585 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.399 5.399 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.098 4.098 24 C -0.239 4.239 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.211 0.789 41 H 0.079 0.921 42 H 0.142 0.858 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.830 22.651 1.877 23.733 hybrid contribution -0.696 -0.987 0.024 1.208 sum -7.527 21.664 1.902 23.013 Atomic orbital electron populations 1.22890 0.94985 1.04574 1.03154 1.21751 0.93811 0.92973 0.84340 1.21799 1.02202 0.92577 1.02816 1.22942 1.02607 1.03414 0.97082 1.86122 1.73066 1.20196 1.43038 1.18870 0.94917 0.83196 0.95086 1.20393 1.04046 0.93903 0.98772 1.20905 0.96271 0.93437 0.98758 1.19756 0.99218 0.95881 0.95838 1.20779 0.99765 0.90357 1.01618 1.20833 0.96382 0.82652 0.98718 1.46157 1.31686 1.04413 1.60250 1.18217 0.81801 0.85620 0.78437 1.90591 1.28841 1.82408 1.44754 1.20895 1.06728 0.89366 1.41472 0.91390 1.25705 0.93979 1.00425 0.93049 1.70003 1.06079 1.34286 1.29535 0.86363 0.78784 0.82484 0.79121 1.19810 1.20491 1.18906 1.20924 0.98756 0.93118 0.96985 1.21793 1.03554 0.96725 1.01782 0.91638 0.91046 0.89698 0.91517 0.90527 0.91588 0.89379 0.91038 0.91501 0.85501 0.85301 0.90818 0.90915 0.93481 0.93335 0.78899 0.92107 0.85764 0.83579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 8.11 37.16 0.30 -1.23 16 2 C 0.11 0.97 1.11 -90.61 -0.10 0.87 16 3 C -0.14 -0.95 8.74 37.16 0.32 -0.63 16 4 C -0.20 -1.77 8.08 37.16 0.30 -1.47 16 5 O -0.31 -3.67 9.79 -19.43 -0.19 -3.86 16 6 C 0.12 1.56 6.06 -39.22 -0.24 1.32 16 7 C -0.15 -1.93 9.99 -39.43 -0.39 -2.33 16 8 C -0.08 -0.98 9.70 -39.60 -0.38 -1.37 16 9 C -0.11 -1.45 5.13 -104.60 -0.54 -1.98 16 10 C -0.09 -1.25 5.45 -27.89 -0.15 -1.41 16 11 C 0.14 2.74 5.66 -4.04 -0.02 2.72 16 12 N -0.77 -17.49 5.55 -61.72 -0.34 -17.84 16 13 C 0.56 16.17 7.72 -12.99 -0.10 16.07 16 14 O -0.58 -19.41 15.09 5.20 0.08 -19.33 16 15 C -0.55 -15.69 9.54 -35.63 -0.34 -16.03 16 16 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 17 C 0.09 2.49 5.49 -17.37 -0.10 2.40 16 18 N -0.77 -23.50 11.89 55.55 0.66 -22.83 16 19 Si 0.91 20.35 29.56 -169.99 -5.03 15.32 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 C -0.08 -1.01 9.69 -39.60 -0.38 -1.39 16 24 C -0.22 -2.58 5.73 -39.43 -0.23 -2.81 16 25 H 0.06 0.47 8.01 -51.93 -0.42 0.06 16 26 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 27 H 0.08 0.74 4.74 -51.92 -0.25 0.50 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.89 4.49 -51.93 -0.23 0.66 16 32 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 33 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.07 0.96 8.08 -51.92 -0.42 0.54 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.38 7.45 8.45 -40.82 -0.35 7.10 16 41 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.15 1.43 3.60 -52.49 -0.19 1.24 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -35.50 349.70 -8.03 -43.53 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.43 Total: 7.01 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.05 Total: -7.28 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.32 Total: -40.67 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.11 Total: -23.19 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.50 -8.03 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320381406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.647 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds