Wall clock time and date at job start Tue Mar 31 2020 07:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46764 * 2 1 4 4 C 1.53006 * 109.47013 * 240.00176 * 2 1 3 5 5 O 1.42899 * 109.47292 * 120.00072 * 2 1 3 6 6 C 1.35900 * 116.99961 * 62.71745 * 5 2 1 7 7 C 1.38730 * 120.05360 * 175.90962 * 6 5 2 8 8 C 1.38151 * 119.94326 * 180.30035 * 7 6 5 9 9 C 1.38266 * 120.05267 * 359.42601 * 8 7 6 10 10 C 1.50698 * 119.94385 * 180.29725 * 9 8 7 11 11 C 1.52995 * 109.47440 * 270.29768 * 10 9 8 12 12 N 1.46501 * 109.47414 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00046 * 180.02562 * 12 11 10 14 14 O 1.21682 * 120.00347 * 359.97438 * 13 12 11 15 15 C 1.46374 * 119.99849 * 180.02562 * 13 12 11 16 16 H 1.08002 * 120.00120 * 5.98956 * 15 13 12 17 17 C 1.40053 * 119.99978 * 185.99623 * 15 13 12 18 18 N 1.30667 * 119.99719 * 6.03047 * 17 15 13 19 19 Si 1.86797 * 119.99820 * 186.02849 * 17 15 13 20 20 H 1.48503 * 109.47049 * 94.99571 * 19 17 15 21 21 H 1.48503 * 109.47022 * 214.98717 * 19 17 15 22 22 H 1.48496 * 109.47496 * 334.99481 * 19 17 15 23 23 C 1.38267 * 120.11388 * 0.59991 * 9 8 7 24 24 C 1.38150 * 120.05411 * 359.67546 * 23 9 8 25 25 H 1.09004 * 109.47032 * 318.01734 * 1 2 3 26 26 H 1.08995 * 109.47181 * 78.02307 * 1 2 3 27 27 H 1.09008 * 109.46881 * 198.02091 * 1 2 3 28 28 H 1.09000 * 109.46825 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47231 * 299.99900 * 3 2 1 30 30 H 1.08997 * 109.47444 * 60.00691 * 3 2 1 31 31 H 1.09002 * 109.46949 * 288.14675 * 4 2 1 32 32 H 1.08995 * 109.46927 * 48.14730 * 4 2 1 33 33 H 1.08998 * 109.46977 * 168.14773 * 4 2 1 34 34 H 1.08002 * 120.03393 * 0.02965 * 7 6 5 35 35 H 1.08000 * 119.97654 * 179.70392 * 8 7 6 36 36 H 1.09000 * 109.47285 * 30.30609 * 10 9 8 37 37 H 1.09008 * 109.47256 * 150.29649 * 10 9 8 38 38 H 1.08999 * 109.47193 * 299.99988 * 11 10 9 39 39 H 1.09006 * 109.46589 * 60.00371 * 11 10 9 40 40 H 0.97000 * 119.99560 * 0.02562 * 12 11 10 41 41 H 0.96999 * 119.99755 * 180.02562 * 18 17 15 42 42 H 1.07996 * 119.97621 * 179.69860 * 23 9 8 43 43 H 1.07995 * 120.03064 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1667 6 6 1.6888 -1.9890 1.2926 7 6 2.1889 -2.7258 2.3564 8 6 1.8696 -4.0643 2.4787 9 6 1.0427 -4.6667 1.5486 10 6 0.6906 -6.1253 1.6881 11 6 1.7265 -6.9732 0.9475 12 7 1.3839 -8.3912 1.0827 13 6 2.1614 -9.3301 0.5079 14 8 3.1477 -9.0002 -0.1238 15 6 1.8186 -10.7468 0.6424 16 1 0.8931 -11.0357 1.1182 17 6 2.6910 -11.7277 0.1543 18 7 3.8620 -11.3860 -0.3140 19 14 2.1804 -13.5245 0.1729 20 1 1.6009 -13.8880 -1.1452 21 1 3.3683 -14.3739 0.4425 22 1 1.1662 -13.7400 1.2359 23 6 0.5434 -3.9347 0.4872 24 6 0.8643 -2.5973 0.3573 25 1 -0.3633 0.7639 0.6874 26 1 -0.3633 0.2132 -1.0052 27 1 -0.3633 -0.9773 0.3179 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.8594 -1.7916 -1.1501 32 1 1.5147 -0.3438 -2.1266 33 1 3.1094 -0.5421 -1.3612 34 1 2.8309 -2.2545 3.0859 35 1 2.2625 -4.6396 3.3040 36 1 0.6848 -6.3984 2.7434 37 1 -0.2966 -6.3032 1.2615 38 1 1.7322 -6.7002 -0.1077 39 1 2.7137 -6.7954 1.3742 40 1 0.5974 -8.6542 1.5858 41 1 4.4660 -12.0654 -0.6524 42 1 -0.0984 -4.4087 -0.2407 43 1 0.4737 -2.0258 -0.4717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320381406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:09 Heat of formation + Delta-G solvation = -74.597707 kcal Electronic energy + Delta-G solvation = -22482.523530 eV Core-core repulsion = 19106.132770 eV Total energy + Delta-G solvation = -3376.390760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79161 -39.64248 -38.95105 -35.93567 -35.06017 -34.53296 -32.77469 -31.94897 -29.54699 -28.37943 -28.37316 -27.56402 -24.50030 -23.72755 -22.29990 -21.72142 -21.18388 -19.20668 -18.29052 -17.55032 -17.33009 -16.69508 -16.28739 -16.17611 -15.87600 -15.84965 -15.33199 -14.92242 -14.88523 -14.53296 -14.39550 -14.05654 -13.77195 -13.34285 -13.33429 -13.10926 -13.00779 -12.90869 -12.83159 -12.71766 -12.61021 -12.40705 -12.36791 -12.13406 -11.98841 -11.65462 -11.49453 -11.30106 -10.93152 -9.88333 -9.87287 -9.48526 -8.96863 -8.31156 -6.84648 0.38982 0.44285 1.41013 1.42600 1.58714 2.24089 2.25845 2.47197 2.74370 3.17344 3.61784 3.70943 3.81009 3.89808 3.92757 3.96455 4.07788 4.21915 4.27972 4.40504 4.46995 4.56610 4.60489 4.65803 4.67956 4.72663 4.82028 4.89107 4.95870 4.99515 5.12348 5.12893 5.16319 5.23885 5.27500 5.32790 5.36393 5.43737 5.73205 5.85658 5.88911 6.25196 6.27808 6.52910 6.87017 7.57053 8.49509 8.67311 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038120 B = 0.002479 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.349430 B =11293.786381 C =11470.725914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.098 3.902 3 C -0.135 4.135 4 C -0.203 4.203 5 O -0.323 6.323 6 C 0.120 3.880 7 C -0.166 4.166 8 C -0.083 4.083 9 C -0.125 4.125 10 C -0.068 4.068 11 C 0.143 3.857 12 N -0.755 5.755 13 C 0.536 3.464 14 O -0.638 6.638 15 C -0.574 4.574 16 H 0.091 0.909 17 C 0.027 3.973 18 N -0.826 5.826 19 Si 1.001 2.999 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.246 1.246 23 C -0.087 4.087 24 C -0.217 4.217 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.025 0.975 40 H 0.398 0.602 41 H 0.275 0.725 42 H 0.136 0.864 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 22.414 2.471 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.061 3.939 3 C -0.192 4.192 4 C -0.260 4.260 5 O -0.238 6.238 6 C 0.074 3.926 7 C -0.184 4.184 8 C -0.101 4.101 9 C -0.125 4.125 10 C -0.106 4.106 11 C 0.019 3.981 12 N -0.410 5.410 13 C 0.340 3.660 14 O -0.525 6.525 15 C -0.611 4.611 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.455 5.455 19 Si 0.820 3.180 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.169 1.169 23 C -0.105 4.105 24 C -0.235 4.235 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.232 0.768 41 H 0.085 0.915 42 H 0.154 0.846 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.904 22.787 2.074 24.553 hybrid contribution -0.048 -0.855 -0.044 0.857 sum -8.952 21.932 2.030 23.776 Atomic orbital electron populations 1.22868 0.93894 1.04049 1.04547 1.22088 0.94787 0.93628 0.83368 1.21840 1.01924 0.91438 1.04011 1.22941 1.02628 1.02414 0.98018 1.86117 1.73358 1.19801 1.44557 1.19040 0.94733 0.83721 0.95078 1.20596 1.04464 0.94004 0.99381 1.21062 0.96170 0.93801 0.99065 1.19755 1.00470 0.95469 0.96856 1.20593 0.98504 0.89819 1.01653 1.20886 0.97283 0.81671 0.98296 1.45821 1.31214 1.05040 1.58917 1.18672 0.81741 0.87189 0.78362 1.90543 1.31296 1.83451 1.47244 1.21453 1.07861 0.89705 1.42043 0.89128 1.27029 0.93476 1.06620 0.91685 1.70173 1.07881 1.36798 1.30662 0.84967 0.78829 0.74357 0.79858 1.18933 1.19737 1.16851 1.21148 0.98882 0.93597 0.96890 1.22016 1.02940 0.96492 1.02018 0.91188 0.88979 0.90858 0.92041 0.88269 0.91449 0.90974 0.88758 0.92094 0.84556 0.84498 0.89385 0.89179 0.95374 0.95637 0.76822 0.91524 0.84588 0.81669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.63 8.11 71.98 0.58 -2.04 16 2 C 0.10 1.60 1.11 -10.79 -0.01 1.59 16 3 C -0.14 -1.64 8.74 71.98 0.63 -1.01 16 4 C -0.20 -3.25 8.08 71.98 0.58 -2.67 16 5 O -0.32 -7.45 9.79 -92.43 -0.90 -8.36 16 6 C 0.12 2.95 6.06 22.51 0.14 3.09 16 7 C -0.17 -4.19 9.99 22.37 0.22 -3.97 16 8 C -0.08 -2.15 9.70 22.26 0.22 -1.94 16 9 C -0.12 -3.35 5.13 -19.85 -0.10 -3.45 16 10 C -0.07 -1.90 5.45 29.85 0.16 -1.73 16 11 C 0.14 5.75 5.66 86.38 0.49 6.24 16 12 N -0.76 -34.59 5.55 -467.41 -2.59 -37.19 16 13 C 0.54 31.96 7.72 86.36 0.67 32.63 16 14 O -0.64 -44.26 15.09 -4.29 -0.06 -44.32 16 15 C -0.57 -32.96 9.54 24.83 0.24 -32.72 16 16 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 17 C 0.03 1.51 5.49 85.31 0.47 1.98 16 18 N -0.83 -51.54 11.89 21.84 0.26 -51.28 16 19 Si 1.00 41.26 29.56 68.60 2.03 43.29 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 23 C -0.09 -2.15 9.69 22.26 0.22 -1.93 16 24 C -0.22 -4.92 5.73 22.37 0.13 -4.79 16 25 H 0.07 0.87 8.01 -2.39 -0.02 0.85 16 26 H 0.09 0.84 7.84 -2.39 -0.02 0.82 16 27 H 0.07 1.16 4.74 -2.38 -0.01 1.15 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.39 4.49 -2.39 -0.01 1.38 16 32 H 0.09 1.04 7.89 -2.39 -0.02 1.03 16 33 H 0.06 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 37 H 0.09 2.20 8.08 -2.38 -0.02 2.18 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.40 15.23 8.45 -92.71 -0.78 14.44 16 41 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 42 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.17 3.01 3.60 -2.91 -0.01 3.00 16 Total: -1.00 -79.52 349.70 3.58 -75.94 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.23 Total: 32.64 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 4.62 Total: -10.72 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -2.34 Total: -88.47 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.97 Total: -52.68 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -79.52 3.58 -75.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320381406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.345 kcal (2) G-P(sol) polarization free energy of solvation -79.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds