Wall clock time and date at job start Tue Mar 31 2020 07:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47473 * 2 1 4 4 H 1.09003 * 109.46501 * 305.00357 * 3 2 1 5 5 C 1.53001 * 109.47044 * 64.99620 * 3 2 1 6 6 C 1.52996 * 109.47751 * 185.00035 * 3 2 1 7 7 C 1.50699 * 109.47403 * 174.99669 * 6 3 2 8 8 O 1.21273 * 119.99868 * 0.02562 * 7 6 3 9 9 N 1.34774 * 119.99663 * 180.02562 * 7 6 3 10 10 C 1.46506 * 119.99494 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02054 * 11 10 9 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99494 * 11 10 9 26 26 H 1.08997 * 109.47617 * 59.99772 * 1 2 3 27 27 H 1.09005 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47085 * 299.99912 * 1 2 3 29 29 H 1.08999 * 109.47085 * 240.00088 * 2 1 3 30 30 H 1.09003 * 109.47271 * 119.99951 * 2 1 3 31 31 H 1.08995 * 109.47676 * 300.00601 * 5 3 2 32 32 H 1.09003 * 109.46870 * 60.00962 * 5 3 2 33 33 H 1.08997 * 109.46967 * 180.02562 * 5 3 2 34 34 H 1.09006 * 109.46601 * 55.00044 * 6 3 2 35 35 H 1.08997 * 109.47252 * 295.00565 * 6 3 2 36 36 H 0.96994 * 120.00750 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.47397 * 59.99565 * 10 9 7 38 38 H 1.08997 * 109.47015 * 299.99408 * 10 9 7 39 39 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 40 40 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 42 42 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8634 -0.2493 8 8 3.2660 3.7826 -0.2375 9 7 5.3760 3.1107 -0.3730 10 6 5.8545 4.4903 -0.4926 11 6 7.3563 4.4921 -0.6165 12 6 8.1432 4.5617 0.5190 13 6 9.5216 4.5641 0.4094 14 6 10.1171 4.4902 -0.8346 15 6 9.3299 4.4259 -1.9768 16 8 9.9122 4.3594 -3.2012 17 6 11.2542 4.4811 -3.2484 18 1 11.8233 4.5427 -2.3326 19 6 11.9036 4.5273 -4.4726 20 7 13.2129 4.6466 -4.5185 21 14 10.9191 4.4214 -6.0566 22 1 10.5317 5.7876 -6.4909 23 1 11.7462 3.7825 -7.1116 24 1 9.6969 3.6100 -5.8266 25 6 7.9456 4.4237 -1.8633 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5489 2.1253 1.3970 32 1 2.0699 1.5876 2.1492 33 1 1.9982 3.1543 1.3071 34 1 3.8570 0.8801 -1.0114 35 1 4.0029 0.9836 0.7596 36 1 6.0086 2.3755 -0.3821 37 1 5.5627 5.0541 0.3934 38 1 5.4160 4.9514 -1.3775 39 1 7.6800 4.6152 1.4932 40 1 10.1333 4.6190 1.2979 41 1 11.1938 4.4869 -0.9193 42 1 13.6672 4.6785 -5.3749 43 1 7.3308 4.3697 -2.7496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321024098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:11 Heat of formation + Delta-G solvation = -64.632603 kcal Electronic energy + Delta-G solvation = -22207.322780 eV Core-core repulsion = 18831.364139 eV Total energy + Delta-G solvation = -3375.958641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01693 -39.24367 -37.18458 -36.46299 -34.53666 -32.46676 -31.41144 -30.57221 -29.45234 -27.93439 -25.88484 -25.13319 -23.95535 -21.87226 -20.78832 -20.65903 -19.93391 -17.89115 -17.51008 -16.75235 -16.03120 -15.72015 -15.31368 -15.21956 -14.85726 -14.45023 -14.13649 -14.00736 -13.84884 -13.52079 -13.31183 -12.86779 -12.65181 -12.60073 -12.24385 -12.19960 -12.13269 -11.86698 -11.54950 -11.47809 -11.05923 -10.96310 -10.91560 -10.83555 -10.78862 -10.76882 -10.23162 -9.77770 -9.48892 -9.02599 -8.94997 -8.35620 -7.50992 -6.48584 -4.16030 1.78769 2.12248 2.64198 3.16919 3.21540 3.33096 3.35416 4.17633 4.36748 4.53877 4.59355 4.63914 4.65524 4.96201 5.01788 5.03494 5.11652 5.25418 5.34919 5.39620 5.44330 5.46775 5.56165 5.61956 5.72233 5.73314 5.80327 5.83808 5.84218 5.97973 5.99340 6.12260 6.19747 6.28740 6.39403 6.47059 6.64764 6.97028 7.08440 7.17703 7.45316 7.54699 7.70609 7.95096 8.23299 8.86245 9.47060 10.58800 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.002798 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.090496 B =10005.217037 C =10816.327334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.076 4.076 4 H 0.077 0.923 5 C -0.154 4.154 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.543 6.543 9 N -0.724 5.724 10 C 0.167 3.833 11 C -0.075 4.075 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.213 4.213 15 C 0.156 3.844 16 O -0.215 6.215 17 C -0.391 4.391 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.877 5.877 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.172 4.172 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.403 0.597 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.280 0.720 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.282 -7.666 9.794 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.179 4.179 7 C 0.297 3.703 8 O -0.421 6.421 9 N -0.375 5.375 10 C 0.044 3.956 11 C -0.075 4.075 12 C -0.206 4.206 13 C -0.096 4.096 14 C -0.232 4.232 15 C 0.104 3.896 16 O -0.120 6.120 17 C -0.467 4.467 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.192 4.192 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.237 0.763 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.090 0.910 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.734 -7.006 9.418 22.108 hybrid contribution 0.430 -0.353 -0.671 0.872 sum -18.304 -7.358 8.747 21.580 Atomic orbital electron populations 1.21806 0.95793 1.01378 1.02084 1.21599 0.96134 0.96180 1.01925 1.20911 0.92780 0.95901 0.99883 0.90411 1.21994 1.01060 1.02201 0.95860 1.21783 0.97744 0.94106 1.04262 1.20713 0.82038 0.91660 0.75865 1.90656 1.54665 1.46701 1.50053 1.46202 1.07503 1.09394 1.74406 1.20134 0.90247 0.82900 1.02275 1.19277 0.93417 1.01889 0.92956 1.20551 0.93570 1.09564 0.96946 1.20809 0.94332 0.97773 0.96637 1.21367 1.01195 1.08648 0.91990 1.19061 0.91672 0.93432 0.85420 1.83574 1.23907 1.79742 1.24820 1.20760 0.77524 1.51906 0.96499 0.87588 1.24474 0.95271 0.95533 0.98675 1.69641 1.07073 1.47295 1.27455 0.86177 0.80290 0.79222 0.81195 1.19822 1.20725 1.18374 1.20079 0.92003 1.10091 0.96987 0.92725 0.92945 0.92426 0.91994 0.91985 0.92824 0.93484 0.90691 0.88902 0.88958 0.76264 0.90958 0.90947 0.87315 0.86968 0.84825 0.90956 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.15 0.36 -0.68 16 2 C -0.12 -0.86 5.40 -26.73 -0.14 -1.00 16 3 C -0.08 -0.68 2.04 -90.62 -0.18 -0.86 16 4 H 0.08 0.82 7.96 -51.93 -0.41 0.40 16 5 C -0.15 -1.45 8.69 37.16 0.32 -1.13 16 6 C -0.14 -1.20 5.17 -27.89 -0.14 -1.34 16 7 C 0.51 6.17 7.55 -10.99 -0.08 6.09 16 8 O -0.54 -8.37 13.96 5.56 0.08 -8.29 16 9 N -0.72 -8.56 5.55 -61.47 -0.34 -8.90 16 10 C 0.17 2.27 5.80 -5.19 -0.03 2.24 16 11 C -0.07 -1.17 5.25 -104.65 -0.55 -1.72 16 12 C -0.19 -2.87 9.70 -39.53 -0.38 -3.26 16 13 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 14 C -0.21 -4.33 9.17 -39.39 -0.36 -4.69 16 15 C 0.16 3.43 6.65 -39.11 -0.26 3.17 16 16 O -0.22 -5.49 8.59 0.05 0.00 -5.49 16 17 C -0.39 -10.72 9.95 30.89 0.31 -10.41 16 18 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -24.83 13.96 55.48 0.77 -24.05 16 21 Si 0.91 21.24 28.62 -169.99 -4.86 16.38 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.17 -3.19 9.65 -39.40 -0.38 -3.57 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.89 5.95 -51.93 -0.31 0.58 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 4.16 8.46 -40.82 -0.35 3.82 16 37 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 41 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 42 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -29.72 354.42 -7.57 -37.29 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.53 Total: 4.93 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -2.02 Total: -17.21 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.43 Total: -32.95 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.08 Total: -13.78 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.86 Total: 16.38 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.72 -7.57 -37.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321024098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.338 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds