Wall clock time and date at job start Tue Mar 31 2020 07:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47473 * 2 1 4 4 H 1.09003 * 109.46501 * 305.00357 * 3 2 1 5 5 C 1.53001 * 109.47044 * 64.99620 * 3 2 1 6 6 C 1.52996 * 109.47751 * 185.00035 * 3 2 1 7 7 C 1.50699 * 109.47403 * 174.99669 * 6 3 2 8 8 O 1.21273 * 119.99868 * 0.02562 * 7 6 3 9 9 N 1.34774 * 119.99663 * 180.02562 * 7 6 3 10 10 C 1.46506 * 119.99494 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02054 * 11 10 9 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99494 * 11 10 9 26 26 H 1.08997 * 109.47617 * 59.99772 * 1 2 3 27 27 H 1.09005 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47085 * 299.99912 * 1 2 3 29 29 H 1.08999 * 109.47085 * 240.00088 * 2 1 3 30 30 H 1.09003 * 109.47271 * 119.99951 * 2 1 3 31 31 H 1.08995 * 109.47676 * 300.00601 * 5 3 2 32 32 H 1.09003 * 109.46870 * 60.00962 * 5 3 2 33 33 H 1.08997 * 109.46967 * 180.02562 * 5 3 2 34 34 H 1.09006 * 109.46601 * 55.00044 * 6 3 2 35 35 H 1.08997 * 109.47252 * 295.00565 * 6 3 2 36 36 H 0.96994 * 120.00750 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.47397 * 59.99565 * 10 9 7 38 38 H 1.08997 * 109.47015 * 299.99408 * 10 9 7 39 39 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 40 40 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 42 42 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8634 -0.2493 8 8 3.2660 3.7826 -0.2375 9 7 5.3760 3.1107 -0.3730 10 6 5.8545 4.4903 -0.4926 11 6 7.3563 4.4921 -0.6165 12 6 8.1432 4.5617 0.5190 13 6 9.5216 4.5641 0.4094 14 6 10.1171 4.4902 -0.8346 15 6 9.3299 4.4259 -1.9768 16 8 9.9122 4.3594 -3.2012 17 6 11.2542 4.4811 -3.2484 18 1 11.8233 4.5427 -2.3326 19 6 11.9036 4.5273 -4.4726 20 7 13.2129 4.6466 -4.5185 21 14 10.9191 4.4214 -6.0566 22 1 10.5317 5.7876 -6.4909 23 1 11.7462 3.7825 -7.1116 24 1 9.6969 3.6100 -5.8266 25 6 7.9456 4.4237 -1.8633 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5489 2.1253 1.3970 32 1 2.0699 1.5876 2.1492 33 1 1.9982 3.1543 1.3071 34 1 3.8570 0.8801 -1.0114 35 1 4.0029 0.9836 0.7596 36 1 6.0086 2.3755 -0.3821 37 1 5.5627 5.0541 0.3934 38 1 5.4160 4.9514 -1.3775 39 1 7.6800 4.6152 1.4932 40 1 10.1333 4.6190 1.2979 41 1 11.1938 4.4869 -0.9193 42 1 13.6672 4.6785 -5.3749 43 1 7.3308 4.3697 -2.7496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321024098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:10 Heat of formation + Delta-G solvation = -82.119789 kcal Electronic energy + Delta-G solvation = -22208.081081 eV Core-core repulsion = 18831.364139 eV Total energy + Delta-G solvation = -3376.716942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16052 -40.67668 -38.65866 -37.28497 -35.68499 -34.46126 -32.51390 -31.48494 -30.94354 -28.78835 -27.38860 -26.64829 -24.69371 -23.33413 -22.30522 -21.55221 -20.69138 -19.70627 -19.04681 -17.84498 -17.05258 -16.91553 -16.72998 -16.42774 -15.88227 -15.77111 -15.67781 -15.20249 -14.97766 -14.70899 -14.50922 -14.23466 -14.02166 -13.85020 -13.55704 -13.29600 -13.11804 -12.77407 -12.70066 -12.56560 -12.47110 -12.38779 -12.16138 -11.94938 -11.73542 -11.51540 -11.37257 -11.32952 -10.93698 -10.75379 -10.05120 -9.78597 -9.13443 -8.50996 -6.23827 0.34587 0.63453 1.31186 1.34597 1.50819 1.71383 2.26695 2.31161 2.79443 2.97456 3.15561 3.73311 3.83624 3.90400 4.02762 4.05176 4.26158 4.30850 4.40491 4.48282 4.48901 4.63879 4.65910 4.68913 4.76560 4.77853 4.86517 4.91819 4.95186 5.17202 5.17782 5.20594 5.25959 5.33760 5.35878 5.42938 5.56897 5.61898 5.63335 5.67888 5.74036 5.88138 6.18194 6.60672 6.83449 7.30725 7.57167 8.60374 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.002798 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.090496 B =10005.217037 C =10816.327334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.075 4.075 4 H 0.056 0.944 5 C -0.151 4.151 6 C -0.133 4.133 7 C 0.509 3.491 8 O -0.579 6.579 9 N -0.719 5.719 10 C 0.173 3.827 11 C -0.060 4.060 12 C -0.160 4.160 13 C -0.073 4.073 14 C -0.229 4.229 15 C 0.119 3.881 16 O -0.245 6.245 17 C -0.398 4.398 18 H 0.084 0.916 19 C 0.011 3.989 20 N -0.922 5.922 21 Si 0.969 3.031 22 H -0.268 1.268 23 H -0.268 1.268 24 H -0.262 1.262 25 C -0.171 4.171 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.412 0.588 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.285 0.715 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.630 -8.887 11.422 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.094 4.094 4 H 0.074 0.926 5 C -0.208 4.208 6 C -0.173 4.173 7 C 0.297 3.703 8 O -0.459 6.459 9 N -0.371 5.371 10 C 0.050 3.950 11 C -0.060 4.060 12 C -0.178 4.178 13 C -0.091 4.091 14 C -0.248 4.248 15 C 0.070 3.930 16 O -0.153 6.153 17 C -0.475 4.475 18 H 0.101 0.899 19 C -0.188 4.188 20 N -0.562 5.562 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.190 4.190 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.249 0.751 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.100 -8.244 11.085 25.220 hybrid contribution 0.946 0.049 -0.847 1.270 sum -20.154 -8.195 10.238 24.045 Atomic orbital electron populations 1.21823 0.95789 1.01916 1.01727 1.21565 0.96139 0.94822 1.02816 1.20892 0.93040 0.96827 0.98678 0.92560 1.21945 1.01351 1.00787 0.96733 1.21834 0.97398 0.91866 1.06179 1.21322 0.81519 0.92736 0.74708 1.90655 1.55494 1.48139 1.51617 1.46118 1.07845 1.08863 1.74244 1.20002 0.88290 0.84188 1.02529 1.19484 0.94738 0.99923 0.91898 1.21030 0.92811 1.05512 0.98480 1.21146 0.95506 0.96398 0.96085 1.21401 1.00232 1.09763 0.93416 1.19577 0.93115 0.95309 0.84954 1.83519 1.22480 1.82559 1.26696 1.20703 0.78708 1.52020 0.96025 0.89888 1.25255 0.96230 0.95585 1.01730 1.69723 1.08399 1.49732 1.28385 0.85244 0.78747 0.79286 0.77611 1.19319 1.19240 1.18675 1.20268 0.90597 1.09560 0.98611 0.93379 0.91952 0.92563 0.91288 0.90840 0.92493 0.92197 0.93347 0.87116 0.86589 0.75142 0.89908 0.91698 0.83366 0.83810 0.87192 0.90577 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.67 71.98 0.70 -1.11 16 2 C -0.12 -1.33 5.40 30.59 0.17 -1.16 16 3 C -0.08 -1.19 2.04 -10.79 -0.02 -1.21 16 4 H 0.06 1.13 7.96 -2.39 -0.02 1.11 16 5 C -0.15 -2.59 8.69 71.98 0.63 -1.97 16 6 C -0.13 -1.89 5.17 29.85 0.15 -1.73 16 7 C 0.51 11.05 7.55 87.66 0.66 11.71 16 8 O -0.58 -17.07 13.96 -3.01 -0.04 -17.11 16 9 N -0.72 -14.75 5.55 -466.80 -2.59 -17.34 16 10 C 0.17 4.19 5.80 85.63 0.50 4.68 16 11 C -0.06 -1.70 5.25 -19.88 -0.10 -1.80 16 12 C -0.16 -4.23 9.70 22.30 0.22 -4.01 16 13 C -0.07 -2.28 10.04 22.25 0.22 -2.05 16 14 C -0.23 -9.41 9.17 22.39 0.21 -9.21 16 15 C 0.12 5.32 6.65 22.58 0.15 5.47 16 16 O -0.24 -12.93 8.59 -22.74 -0.20 -13.13 16 17 C -0.40 -22.93 9.95 67.92 0.68 -22.26 16 18 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 19 C 0.01 0.60 5.49 84.83 0.47 1.07 16 20 N -0.92 -54.30 13.96 21.61 0.30 -54.00 16 21 Si 0.97 44.87 28.62 68.60 1.96 46.84 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 25 C -0.17 -6.17 9.65 22.39 0.22 -5.95 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.06 0.66 6.56 -2.39 -0.02 0.64 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.91 6.56 -2.39 -0.02 0.89 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.10 5.95 -2.39 -0.01 1.09 16 34 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.41 7.03 8.46 -92.71 -0.78 6.24 16 37 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 38 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 39 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.11 5.03 5.64 -2.91 -0.02 5.01 16 42 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -67.85 354.42 4.49 -63.37 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.22 Total: 20.90 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 4.83 Total: -29.53 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -2.29 Total: -71.34 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.24 Total: -30.24 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.96 Total: 46.84 kcal Total: -67.85 4.49 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321024098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.752 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds