Wall clock time and date at job start Tue Mar 31 2020 07:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47445 * 2 1 4 4 C 1.53003 * 109.46990 * 240.00288 * 2 1 3 5 5 O 1.42900 * 109.47404 * 120.00486 * 2 1 3 6 6 N 1.41595 * 114.00323 * 59.99495 * 5 2 1 7 7 C 1.29320 * 120.00342 * 180.02562 * 6 5 2 8 8 C 1.47659 * 120.00345 * 179.97438 * 7 6 5 9 9 C 1.39651 * 120.12068 * 359.97438 * 8 7 6 10 10 C 1.37956 * 119.96153 * 180.02562 * 9 8 7 11 11 C 1.38290 * 120.20692 * 359.73862 * 10 9 8 12 12 C 1.38812 * 120.24943 * 0.51762 * 11 10 9 13 13 O 1.35903 * 119.98510 * 179.76566 * 12 11 10 14 14 C 1.42898 * 116.99959 * 359.71704 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38491 * 120.03328 * 359.48243 * 12 11 10 25 25 H 1.09000 * 109.46760 * 300.00204 * 1 2 3 26 26 H 1.09003 * 109.47085 * 59.99496 * 1 2 3 27 27 H 1.08999 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47471 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47391 * 300.00317 * 3 2 1 30 30 H 1.09000 * 109.47309 * 60.00132 * 3 2 1 31 31 H 1.09004 * 109.47155 * 300.00163 * 4 2 1 32 32 H 1.08998 * 109.46923 * 59.99459 * 4 2 1 33 33 H 1.08998 * 109.47601 * 180.02562 * 4 2 1 34 34 H 1.08000 * 120.00082 * 0.02562 * 7 6 5 35 35 H 1.07998 * 120.01743 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.89487 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.87278 * 180.25296 * 11 10 9 38 38 H 1.09002 * 109.47259 * 300.00539 * 14 13 12 39 39 H 1.09001 * 109.47074 * 60.00561 * 14 13 12 40 40 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 42 42 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.10509 * 180.23436 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 7 1.5886 -2.0232 1.2636 7 6 1.9532 -2.7420 2.2748 8 6 1.5170 -4.1491 2.3761 9 6 0.7102 -4.7060 1.3815 10 6 0.3042 -6.0208 1.4797 11 6 0.6980 -6.7919 2.5580 12 6 1.4955 -6.2457 3.5543 13 8 1.8754 -7.0070 4.6139 14 6 1.4125 -8.3587 4.6408 15 6 1.9375 -9.0527 5.8992 16 6 1.4498 -10.4783 5.9273 17 1 0.8280 -10.8521 5.1272 18 6 1.7983 -11.3057 6.9736 19 7 2.5559 -10.8506 7.9476 20 14 1.1933 -13.0727 7.0087 21 1 0.3630 -13.3354 5.8059 22 1 2.3575 -13.9945 7.0170 23 1 0.3789 -13.2928 8.2307 24 6 1.9090 -4.9269 3.4659 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2494 32 1 1.6765 -0.2074 -2.1392 33 1 3.1299 -0.7217 -1.2492 34 1 2.5761 -2.3130 3.0458 35 1 0.4037 -4.1075 0.5364 36 1 -0.3201 -6.4503 0.7102 37 1 0.3803 -7.8218 2.6274 38 1 0.3226 -8.3694 4.6482 39 1 1.7751 -8.8845 3.7575 40 1 3.0274 -9.0419 5.8922 41 1 1.5747 -8.5268 6.7824 42 1 2.8014 -11.4328 8.6836 43 1 2.5326 -4.5018 4.2384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323132641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:56 Heat of formation + Delta-G solvation = -20.449468 kcal Electronic energy + Delta-G solvation = -21728.413389 eV Core-core repulsion = 18354.370672 eV Total energy + Delta-G solvation = -3374.042716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84126 -38.69398 -37.44667 -35.20327 -33.41399 -32.66044 -31.02980 -29.98213 -28.98748 -27.70127 -27.59407 -25.25975 -23.75513 -22.42755 -21.38474 -20.34242 -19.75225 -17.67826 -17.20029 -16.35535 -15.99416 -15.69575 -15.39304 -15.27876 -15.15035 -14.61793 -14.45615 -13.83178 -13.64658 -13.43773 -12.93866 -12.91697 -12.67196 -12.35587 -12.32251 -12.31043 -12.01430 -11.76006 -11.64793 -11.49958 -11.30239 -11.22143 -10.91996 -10.78184 -10.54488 -10.07884 -9.94316 -9.86494 -9.69169 -9.31275 -8.60532 -8.47119 -7.93062 -6.12698 -4.17391 0.75456 1.57501 2.38634 2.42830 3.25133 3.32334 3.35681 3.76647 3.93521 4.38483 4.52153 4.55028 4.57854 4.71969 4.82469 4.97801 5.20017 5.21433 5.23941 5.26615 5.26980 5.41512 5.46990 5.50801 5.51517 5.56427 5.66391 5.73629 5.98212 5.98453 5.98877 5.99209 6.01677 6.21930 6.45546 6.49556 6.50910 6.65887 6.82873 7.36407 7.47027 7.61070 7.77190 8.00128 8.20924 8.88435 9.47172 10.98845 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.050329 B = 0.002121 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.210940 B =13199.040133 C =13553.584050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 C -0.139 4.139 4 C -0.167 4.167 5 O -0.234 6.234 6 N -0.331 5.331 7 C 0.153 3.847 8 C -0.028 4.028 9 C -0.129 4.129 10 C -0.086 4.086 11 C -0.193 4.193 12 C 0.142 3.858 13 O -0.314 6.314 14 C 0.064 3.936 15 C 0.024 3.976 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.129 4.129 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 20.398 -16.803 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.082 3.918 3 C -0.197 4.197 4 C -0.225 4.225 5 O -0.249 6.249 6 N -0.075 5.075 7 C -0.056 4.056 8 C -0.029 4.029 9 C -0.150 4.150 10 C -0.105 4.105 11 C -0.212 4.212 12 C 0.094 3.906 13 O -0.227 6.227 14 C -0.009 4.009 15 C -0.013 4.013 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.150 4.150 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.221 20.610 -17.173 27.020 hybrid contribution -0.008 -0.972 0.549 1.116 sum -3.230 19.638 -16.625 25.932 Atomic orbital electron populations 1.22303 0.94925 1.03243 1.02040 1.21472 0.93974 0.91529 0.84851 1.21828 1.02043 0.93026 1.02835 1.22303 1.01547 1.01732 0.96929 1.89900 1.72465 1.18138 1.44413 1.76483 1.17439 0.91923 1.21700 1.24236 0.94747 0.92376 0.94289 1.17986 0.99509 0.89871 0.95569 1.21120 0.99323 0.95409 0.99110 1.20877 0.98695 0.93612 0.97271 1.21572 1.02174 1.01614 0.95873 1.18970 0.92937 0.91057 0.87588 1.86187 1.70335 1.25890 1.40301 1.23364 0.98282 0.76862 1.02442 1.19135 0.97636 0.94152 0.90341 1.21003 1.32463 0.95404 1.07600 0.92289 1.24997 0.94949 0.98933 0.95359 1.69987 1.35960 1.36224 1.10521 0.86427 0.78627 0.84230 0.78085 1.19637 1.20840 1.20835 1.20415 1.03657 0.91817 0.99062 0.92330 0.91845 0.91292 0.91741 0.90481 0.91739 0.91297 0.91847 0.92326 0.85974 0.85453 0.85688 0.84860 0.93007 0.93005 0.95341 0.95335 0.92740 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 8.53 37.16 0.32 -1.10 16 2 C 0.12 1.11 1.19 -90.62 -0.11 1.00 16 3 C -0.14 -0.96 8.84 37.16 0.33 -0.63 16 4 C -0.17 -1.42 8.53 37.16 0.32 -1.10 16 5 O -0.23 -2.81 10.88 -11.47 -0.12 -2.94 16 6 N -0.33 -4.05 8.82 32.14 0.28 -3.77 16 7 C 0.15 1.80 10.90 -14.76 -0.16 1.64 16 8 C -0.03 -0.36 5.87 -105.05 -0.62 -0.97 16 9 C -0.13 -1.59 9.57 -39.16 -0.37 -1.96 16 10 C -0.09 -1.07 10.03 -39.67 -0.40 -1.46 16 11 C -0.19 -2.81 9.03 -39.35 -0.36 -3.16 16 12 C 0.14 2.31 6.68 -39.28 -0.26 2.05 16 13 O -0.31 -6.15 10.13 -19.44 -0.20 -6.35 16 14 C 0.06 1.33 4.68 37.16 0.17 1.50 16 15 C 0.02 0.63 5.34 -27.89 -0.15 0.48 16 16 C -0.53 -14.43 9.11 -34.44 -0.31 -14.74 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 20 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.13 -1.81 9.73 -39.01 -0.38 -2.19 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.67 7.65 -51.93 -0.40 0.27 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.67 7.66 -51.93 -0.40 0.27 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.42 7.55 -52.49 -0.40 1.03 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.89 6.28 -52.49 -0.33 1.56 16 38 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 39 H 0.05 1.01 7.64 -51.93 -0.40 0.61 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -30.15 365.42 -7.83 -37.97 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.93 Total: -1.93 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -2.08 Total: -19.08 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 1.02 Total: -29.19 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.32 Total: -9.29 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.15 -7.83 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323132641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.521 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds