Wall clock time and date at job start Tue Mar 31 2020 07:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47445 * 2 1 4 4 C 1.53003 * 109.46990 * 240.00288 * 2 1 3 5 5 O 1.42900 * 109.47404 * 120.00486 * 2 1 3 6 6 N 1.41595 * 114.00323 * 59.99495 * 5 2 1 7 7 C 1.29320 * 120.00342 * 180.02562 * 6 5 2 8 8 C 1.47659 * 120.00345 * 179.97438 * 7 6 5 9 9 C 1.39651 * 120.12068 * 359.97438 * 8 7 6 10 10 C 1.37956 * 119.96153 * 180.02562 * 9 8 7 11 11 C 1.38290 * 120.20692 * 359.73862 * 10 9 8 12 12 C 1.38812 * 120.24943 * 0.51762 * 11 10 9 13 13 O 1.35903 * 119.98510 * 179.76566 * 12 11 10 14 14 C 1.42898 * 116.99959 * 359.71704 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38491 * 120.03328 * 359.48243 * 12 11 10 25 25 H 1.09000 * 109.46760 * 300.00204 * 1 2 3 26 26 H 1.09003 * 109.47085 * 59.99496 * 1 2 3 27 27 H 1.08999 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47471 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47391 * 300.00317 * 3 2 1 30 30 H 1.09000 * 109.47309 * 60.00132 * 3 2 1 31 31 H 1.09004 * 109.47155 * 300.00163 * 4 2 1 32 32 H 1.08998 * 109.46923 * 59.99459 * 4 2 1 33 33 H 1.08998 * 109.47601 * 180.02562 * 4 2 1 34 34 H 1.08000 * 120.00082 * 0.02562 * 7 6 5 35 35 H 1.07998 * 120.01743 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.89487 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.87278 * 180.25296 * 11 10 9 38 38 H 1.09002 * 109.47259 * 300.00539 * 14 13 12 39 39 H 1.09001 * 109.47074 * 60.00561 * 14 13 12 40 40 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 42 42 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.10509 * 180.23436 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 7 1.5886 -2.0232 1.2636 7 6 1.9532 -2.7420 2.2748 8 6 1.5170 -4.1491 2.3761 9 6 0.7102 -4.7060 1.3815 10 6 0.3042 -6.0208 1.4797 11 6 0.6980 -6.7919 2.5580 12 6 1.4955 -6.2457 3.5543 13 8 1.8754 -7.0070 4.6139 14 6 1.4125 -8.3587 4.6408 15 6 1.9375 -9.0527 5.8992 16 6 1.4498 -10.4783 5.9273 17 1 0.8280 -10.8521 5.1272 18 6 1.7983 -11.3057 6.9736 19 7 2.5559 -10.8506 7.9476 20 14 1.1933 -13.0727 7.0087 21 1 0.3630 -13.3354 5.8059 22 1 2.3575 -13.9945 7.0170 23 1 0.3789 -13.2928 8.2307 24 6 1.9090 -4.9269 3.4659 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2494 32 1 1.6765 -0.2074 -2.1392 33 1 3.1299 -0.7217 -1.2492 34 1 2.5761 -2.3130 3.0458 35 1 0.4037 -4.1075 0.5364 36 1 -0.3201 -6.4503 0.7102 37 1 0.3803 -7.8218 2.6274 38 1 0.3226 -8.3694 4.6482 39 1 1.7751 -8.8845 3.7575 40 1 3.0274 -9.0419 5.8922 41 1 1.5747 -8.5268 6.7824 42 1 2.8014 -11.4328 8.6836 43 1 2.5326 -4.5018 4.2384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323132641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:55 Heat of formation + Delta-G solvation = -35.699770 kcal Electronic energy + Delta-G solvation = -21729.074691 eV Core-core repulsion = 18354.370672 eV Total energy + Delta-G solvation = -3374.704019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.06369 -39.51143 -38.67037 -36.11842 -35.42382 -33.54797 -32.60781 -31.31449 -30.19887 -28.28169 -28.24566 -27.06540 -24.99670 -23.52378 -22.99191 -21.40706 -20.72473 -19.05849 -18.16253 -18.07026 -16.98914 -16.92001 -16.83164 -16.61200 -16.09565 -16.03624 -15.56979 -14.60402 -14.55147 -14.44015 -14.35063 -14.25892 -14.16525 -13.30882 -13.26391 -13.12900 -12.95636 -12.90979 -12.70746 -12.65521 -12.64569 -12.48683 -12.13725 -12.10218 -11.97390 -11.58516 -11.55083 -11.35525 -10.89007 -10.80895 -10.61254 -9.62824 -9.12454 -8.25422 -6.38552 -0.26576 0.48388 1.39467 1.42410 1.42987 1.55684 1.57255 2.29288 2.53227 2.86642 3.09380 3.62465 3.86790 3.91429 3.91501 4.03148 4.08453 4.19380 4.25993 4.29354 4.31185 4.51117 4.53953 4.64466 4.68121 4.75876 4.77876 4.80368 4.91585 4.92751 4.99436 5.11802 5.27984 5.33060 5.33907 5.36827 5.41772 5.47883 5.50155 5.59999 5.68773 5.81448 6.08958 6.47296 6.54855 6.76907 7.31573 8.87775 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.050329 B = 0.002121 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.210940 B =13199.040133 C =13553.584050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 C -0.136 4.136 4 C -0.164 4.164 5 O -0.249 6.249 6 N -0.336 5.336 7 C 0.149 3.851 8 C -0.025 4.025 9 C -0.123 4.123 10 C -0.080 4.080 11 C -0.199 4.199 12 C 0.108 3.892 13 O -0.338 6.338 14 C 0.083 3.917 15 C 0.026 3.974 16 C -0.544 4.544 17 H 0.072 0.928 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.975 3.025 21 H -0.257 1.257 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.131 4.131 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.063 0.937 39 H 0.063 0.937 40 H -0.001 1.001 41 H -0.001 1.001 42 H 0.266 0.734 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 20.891 -19.114 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 C -0.194 4.194 4 C -0.221 4.221 5 O -0.265 6.265 6 N -0.079 5.079 7 C -0.061 4.061 8 C -0.026 4.026 9 C -0.143 4.143 10 C -0.097 4.097 11 C -0.219 4.219 12 C 0.063 3.937 13 O -0.252 6.252 14 C 0.009 3.991 15 C -0.011 4.011 16 C -0.581 4.581 17 H 0.090 0.910 18 C -0.198 4.198 19 N -0.570 5.570 20 Si 0.799 3.201 21 H -0.180 1.180 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.152 4.152 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.075 0.925 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.473 21.122 -19.510 29.100 hybrid contribution 0.385 -0.934 1.167 1.543 sum -4.088 20.189 -18.343 27.582 Atomic orbital electron populations 1.22272 0.94425 1.02542 1.02891 1.21832 0.94547 0.92437 0.84217 1.21858 1.01975 0.91619 1.03933 1.22273 1.01183 1.01094 0.97580 1.89895 1.72865 1.17783 1.45971 1.76418 1.17347 0.92408 1.21751 1.24256 0.95097 0.91942 0.94821 1.18056 0.99194 0.90270 0.95099 1.21391 0.98299 0.95569 0.99080 1.21183 0.98225 0.93320 0.97013 1.21693 1.02022 1.02040 0.96123 1.19242 0.95098 0.91659 0.87741 1.86095 1.71371 1.25385 1.42371 1.22893 0.98490 0.77713 1.00002 1.18979 0.95778 0.94459 0.91885 1.21442 1.32480 0.96210 1.08018 0.90999 1.26037 0.94967 1.03959 0.94861 1.70129 1.37365 1.38162 1.11376 0.85246 0.78216 0.78045 0.78610 1.18048 1.20376 1.20370 1.20534 1.03685 0.91215 0.99784 0.92838 0.89651 0.92712 0.91892 0.88136 0.91891 0.92717 0.89653 0.92835 0.84592 0.83990 0.82583 0.84675 0.91908 0.91898 0.98259 0.98250 0.92510 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.53 71.98 0.61 -1.86 16 2 C 0.11 1.80 1.19 -10.79 -0.01 1.78 16 3 C -0.14 -1.59 8.84 71.98 0.64 -0.96 16 4 C -0.16 -2.48 8.53 71.98 0.61 -1.86 16 5 O -0.25 -5.71 10.88 -38.77 -0.42 -6.13 16 6 N -0.34 -7.81 8.82 -52.24 -0.46 -8.27 16 7 C 0.15 3.33 10.90 87.55 0.95 4.28 16 8 C -0.02 -0.61 5.87 -20.14 -0.12 -0.72 16 9 C -0.12 -2.78 9.57 22.54 0.22 -2.56 16 10 C -0.08 -1.78 10.03 22.22 0.22 -1.56 16 11 C -0.20 -5.59 9.03 22.42 0.20 -5.39 16 12 C 0.11 3.54 6.68 22.47 0.15 3.69 16 13 O -0.34 -13.64 10.13 -92.46 -0.94 -14.58 16 14 C 0.08 3.50 4.68 71.98 0.34 3.83 16 15 C 0.03 1.40 5.34 29.85 0.16 1.56 16 16 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 17 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 20 Si 0.98 43.07 29.54 68.60 2.03 45.09 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 C -0.13 -3.67 9.73 22.64 0.22 -3.45 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.98 7.65 -2.39 -0.02 0.96 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.98 7.66 -2.39 -0.02 0.96 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.14 2.81 7.55 -2.91 -0.02 2.79 16 36 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.14 3.68 6.28 -2.91 -0.02 3.66 16 38 H 0.06 2.46 7.67 -2.39 -0.02 2.44 16 39 H 0.06 2.46 7.64 -2.39 -0.02 2.44 16 40 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -66.12 365.42 6.35 -59.77 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.97 Total: 12.72 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 4.89 Total: -32.68 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.18 Total: -64.19 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -1.36 Total: -20.71 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -66.12 6.35 -59.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323132641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.072 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds