Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47552 * 2 1 4 4 C 1.50702 * 109.46860 * 240.00105 * 2 1 3 5 5 H 1.07999 * 120.00051 * 240.00140 * 4 2 1 6 6 C 1.37880 * 120.00202 * 60.00566 * 4 2 1 7 7 N 1.31516 * 119.99710 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47223 * 90.00081 * 8 6 4 10 10 H 1.48499 * 109.46908 * 209.99529 * 8 6 4 11 11 H 1.48492 * 109.47460 * 329.99704 * 8 6 4 12 12 C 1.53008 * 109.46983 * 120.00466 * 2 1 3 13 13 N 1.46492 * 109.46894 * 299.99497 * 12 2 1 14 14 C 1.34779 * 119.99953 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99859 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00088 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.46983 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.46986 * 179.97438 * 17 16 14 19 19 C 1.38289 * 119.96926 * 270.01927 * 18 17 16 20 20 C 1.38240 * 120.11036 * 180.02562 * 19 18 17 21 21 C 1.38173 * 120.05812 * 359.67646 * 20 19 18 22 22 C 1.38709 * 119.93675 * 0.57760 * 21 20 19 23 23 O 1.35905 * 120.05346 * 179.72475 * 22 21 20 24 24 C 1.38116 * 119.97322 * 89.99956 * 18 17 16 25 25 H 1.09000 * 109.47026 * 299.99672 * 1 2 3 26 26 H 1.09005 * 109.47179 * 59.99647 * 1 2 3 27 27 H 1.08995 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47101 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47079 * 300.00191 * 3 2 1 30 30 H 1.09000 * 109.46688 * 60.00121 * 3 2 1 31 31 H 0.96996 * 120.00077 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46838 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.46999 * 60.00026 * 12 2 1 34 34 H 0.96999 * 120.00470 * 0.02562 * 13 12 2 35 35 H 1.09002 * 109.47472 * 59.99277 * 16 14 13 36 36 H 1.09007 * 109.46797 * 299.99211 * 16 14 13 37 37 H 1.09002 * 109.47572 * 59.99381 * 17 16 14 38 38 H 1.09000 * 109.47040 * 299.99035 * 17 16 14 39 39 H 1.08001 * 119.94341 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97312 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.03009 * 180.29712 * 21 20 19 42 42 H 0.96705 * 113.99576 * 269.72355 * 23 22 21 43 43 H 1.08003 * 120.03068 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3446 -2.1614 -4.4125 10 1 2.4872 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 6 2.0399 -0.7214 1.2493 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5749 -1.4772 3.7807 16 6 1.3750 0.2190 4.9000 17 6 1.8850 -0.5023 6.1491 18 6 1.3828 0.2082 7.3797 19 6 2.1306 1.2257 7.9434 20 6 1.6729 1.8790 9.0725 21 6 0.4635 1.5211 9.6367 22 6 -0.2859 0.4973 9.0762 23 8 -1.4731 0.1396 9.6325 24 6 0.1759 -0.1572 7.9432 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 0.7082 1.1611 -3.4843 32 1 3.1299 -0.7218 1.2490 33 1 1.6766 -1.7491 1.2491 34 1 0.9938 0.7577 2.3565 35 1 0.2849 0.2184 4.9000 36 1 1.7378 1.2470 4.9000 37 1 2.9750 -0.5020 6.1493 38 1 1.5219 -1.5300 6.1490 39 1 3.0737 1.5105 7.5009 40 1 2.2589 2.6732 9.5112 41 1 0.1041 2.0351 10.5159 42 1 -1.4002 -0.5530 10.3035 43 1 -0.4077 -0.9520 7.5026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352281565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -77.533102 kcal Electronic energy + Delta-G solvation = -22420.625764 eV Core-core repulsion = 19044.107716 eV Total energy + Delta-G solvation = -3376.518048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10116 -39.25016 -37.21707 -36.37663 -33.80926 -33.26280 -30.98917 -30.31521 -29.49989 -25.98200 -25.73242 -25.25460 -23.87260 -22.82357 -21.37185 -19.92520 -18.77149 -18.28364 -16.90894 -16.58857 -16.17346 -15.76498 -15.38327 -15.17236 -15.05852 -14.63513 -14.11155 -13.60197 -13.52657 -13.12069 -12.92237 -12.68274 -12.52856 -12.20700 -12.06500 -11.92643 -11.69340 -11.37800 -11.19541 -11.01008 -10.86309 -10.71342 -10.68089 -10.39018 -10.20875 -9.63996 -9.58133 -9.27740 -9.05617 -8.82225 -8.77088 -8.45333 -8.30692 -6.02614 -4.12733 0.98808 1.07241 3.06790 3.27901 3.33916 3.34984 3.38852 3.75211 3.96184 4.39694 4.60240 4.63402 4.88037 5.02103 5.04975 5.08756 5.24119 5.27554 5.33932 5.54528 5.62288 5.73362 5.84949 6.08319 6.15617 6.16140 6.24180 6.32753 6.40111 6.50682 6.57092 6.78060 6.82097 6.93273 7.01323 7.04376 7.35101 7.36697 7.55198 7.68988 8.00513 8.06195 8.15617 8.38191 8.71476 8.88236 9.53139 10.98823 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035865 B = 0.002513 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.524545 B =11141.455691 C =11241.237035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.718 5.718 14 C 0.503 3.497 15 O -0.555 6.555 16 C -0.136 4.136 17 C -0.065 4.065 18 C -0.061 4.061 19 C -0.125 4.125 20 C -0.102 4.102 21 C -0.153 4.153 22 C 0.104 3.896 23 O -0.501 6.501 24 C -0.142 4.142 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.398 0.602 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.389 0.611 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 2.579 22.089 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.368 5.368 14 C 0.289 3.711 15 O -0.434 6.434 16 C -0.176 4.176 17 C -0.103 4.103 18 C -0.061 4.061 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.172 4.172 22 C 0.060 3.940 23 O -0.311 6.311 24 C -0.160 4.160 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.233 0.767 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.245 0.755 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.401 2.411 21.603 21.782 hybrid contribution 0.111 -0.353 -0.581 0.688 sum -1.290 2.058 21.023 21.162 Atomic orbital electron populations 1.21833 0.97779 0.99174 1.00102 1.18354 0.92781 0.92754 0.90607 1.21832 0.98570 0.98373 1.00099 1.20993 1.31470 1.12074 0.89919 0.92458 1.24885 0.94881 0.94913 0.98864 1.69803 1.36703 1.22750 1.23230 0.86569 0.79324 0.79385 0.82585 1.20710 1.21259 1.19911 1.21705 0.98095 0.95775 0.83546 1.46344 1.52531 1.31797 1.06123 1.20554 0.80768 0.84853 0.84974 1.90664 1.38835 1.26859 1.87083 1.21649 1.02643 1.00765 0.92572 1.20355 1.01831 0.98918 0.89202 1.19883 0.93875 0.95867 0.96463 1.21155 1.00492 0.96266 0.96388 1.21035 0.95555 0.99501 0.95925 1.21400 0.95099 0.99196 1.01474 1.18475 0.85726 0.95734 0.94082 1.84835 1.27210 1.60381 1.58649 1.21379 0.96207 1.01322 0.97102 0.97479 0.89590 0.95458 0.95452 0.89589 0.97483 0.93002 0.92786 0.92801 0.76690 0.89049 0.89010 0.89895 0.90029 0.85558 0.85606 0.85659 0.75505 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.27 8.01 -34.44 -0.28 -13.55 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.63 9.35 55.43 0.52 -23.12 16 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 13 N -0.72 -12.57 4.96 -60.30 -0.30 -12.87 16 14 C 0.50 8.36 7.83 -10.99 -0.09 8.28 16 15 O -0.56 -11.24 15.98 5.56 0.09 -11.15 16 16 C -0.14 -1.62 5.68 -27.89 -0.16 -1.78 16 17 C -0.07 -0.74 4.63 -27.88 -0.13 -0.87 16 18 C -0.06 -0.62 5.13 -104.64 -0.54 -1.16 16 19 C -0.12 -1.15 9.70 -39.56 -0.38 -1.54 16 20 C -0.10 -0.85 10.04 -39.60 -0.40 -1.25 16 21 C -0.15 -1.34 9.99 -39.43 -0.39 -1.74 16 22 C 0.10 1.01 6.70 -39.22 -0.26 0.75 16 23 O -0.50 -4.37 13.50 -19.44 -0.26 -4.64 16 24 C -0.14 -1.43 9.64 -39.43 -0.38 -1.81 16 25 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 26 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 31 H 0.26 6.69 8.31 -40.82 -0.34 6.36 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.40 6.30 6.16 -40.82 -0.25 6.05 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 37 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 38 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.39 1.48 9.06 45.56 0.41 1.89 16 43 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -30.44 352.63 -8.04 -38.48 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.79 Total: 6.61 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.59 Total: -14.35 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.22 Total: -35.99 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.17 Total: -15.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.44 -8.04 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352281565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.053 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds