Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47552 * 2 1 4 4 C 1.50702 * 109.46860 * 240.00105 * 2 1 3 5 5 H 1.07999 * 120.00051 * 240.00140 * 4 2 1 6 6 C 1.37880 * 120.00202 * 60.00566 * 4 2 1 7 7 N 1.31516 * 119.99710 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47223 * 90.00081 * 8 6 4 10 10 H 1.48499 * 109.46908 * 209.99529 * 8 6 4 11 11 H 1.48492 * 109.47460 * 329.99704 * 8 6 4 12 12 C 1.53008 * 109.46983 * 120.00466 * 2 1 3 13 13 N 1.46492 * 109.46894 * 299.99497 * 12 2 1 14 14 C 1.34779 * 119.99953 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99859 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00088 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.46983 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.46986 * 179.97438 * 17 16 14 19 19 C 1.38289 * 119.96926 * 270.01927 * 18 17 16 20 20 C 1.38240 * 120.11036 * 180.02562 * 19 18 17 21 21 C 1.38173 * 120.05812 * 359.67646 * 20 19 18 22 22 C 1.38709 * 119.93675 * 0.57760 * 21 20 19 23 23 O 1.35905 * 120.05346 * 179.72475 * 22 21 20 24 24 C 1.38116 * 119.97322 * 89.99956 * 18 17 16 25 25 H 1.09000 * 109.47026 * 299.99672 * 1 2 3 26 26 H 1.09005 * 109.47179 * 59.99647 * 1 2 3 27 27 H 1.08995 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47101 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47079 * 300.00191 * 3 2 1 30 30 H 1.09000 * 109.46688 * 60.00121 * 3 2 1 31 31 H 0.96996 * 120.00077 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46838 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.46999 * 60.00026 * 12 2 1 34 34 H 0.96999 * 120.00470 * 0.02562 * 13 12 2 35 35 H 1.09002 * 109.47472 * 59.99277 * 16 14 13 36 36 H 1.09007 * 109.46797 * 299.99211 * 16 14 13 37 37 H 1.09002 * 109.47572 * 59.99381 * 17 16 14 38 38 H 1.09000 * 109.47040 * 299.99035 * 17 16 14 39 39 H 1.08001 * 119.94341 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97312 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.03009 * 180.29712 * 21 20 19 42 42 H 0.96705 * 113.99576 * 269.72355 * 23 22 21 43 43 H 1.08003 * 120.03068 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3446 -2.1614 -4.4125 10 1 2.4872 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 6 2.0399 -0.7214 1.2493 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5749 -1.4772 3.7807 16 6 1.3750 0.2190 4.9000 17 6 1.8850 -0.5023 6.1491 18 6 1.3828 0.2082 7.3797 19 6 2.1306 1.2257 7.9434 20 6 1.6729 1.8790 9.0725 21 6 0.4635 1.5211 9.6367 22 6 -0.2859 0.4973 9.0762 23 8 -1.4731 0.1396 9.6325 24 6 0.1759 -0.1572 7.9432 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 0.7082 1.1611 -3.4843 32 1 3.1299 -0.7218 1.2490 33 1 1.6766 -1.7491 1.2491 34 1 0.9938 0.7577 2.3565 35 1 0.2849 0.2184 4.9000 36 1 1.7378 1.2470 4.9000 37 1 2.9750 -0.5020 6.1493 38 1 1.5219 -1.5300 6.1490 39 1 3.0737 1.5105 7.5009 40 1 2.2589 2.6732 9.5112 41 1 0.1041 2.0351 10.5159 42 1 -1.4002 -0.5530 10.3035 43 1 -0.4077 -0.9520 7.5026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352281565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -96.457357 kcal Electronic energy + Delta-G solvation = -22421.446381 eV Core-core repulsion = 19044.107716 eV Total energy + Delta-G solvation = -3377.338666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97787 -40.46377 -38.23969 -37.77557 -34.97300 -34.68855 -32.75133 -31.11002 -30.32929 -27.56341 -27.55208 -27.02383 -25.09727 -23.48652 -22.20921 -21.24879 -20.58095 -18.99596 -18.29290 -17.61837 -17.26360 -17.00959 -16.69466 -16.41280 -16.31954 -15.99552 -15.07969 -14.97553 -14.77294 -14.57696 -14.05390 -13.92530 -13.83356 -13.58551 -13.18444 -13.08839 -12.85522 -12.70665 -12.66902 -12.58688 -12.41981 -12.24945 -12.13802 -11.90220 -11.48357 -11.36669 -11.27265 -10.83662 -10.67335 -10.40116 -9.91054 -9.77220 -9.50026 -8.02763 -6.18586 0.31669 0.39399 1.41925 1.44850 1.53020 1.73571 2.34408 2.50449 2.73606 3.20762 3.32088 3.71594 3.95699 4.03864 4.20344 4.22802 4.30766 4.43743 4.49210 4.51786 4.60835 4.68455 4.73136 4.84983 5.00902 5.02440 5.06082 5.09466 5.11946 5.19689 5.21241 5.38564 5.49046 5.50581 5.61932 5.66897 5.67265 5.68163 5.94912 6.15326 6.21991 6.43455 6.70929 6.85969 6.87702 7.36437 7.49234 8.96105 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035865 B = 0.002513 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.524545 B =11141.455691 C =11241.237035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.147 3.853 13 N -0.713 5.713 14 C 0.502 3.498 15 O -0.594 6.594 16 C -0.124 4.124 17 C -0.059 4.059 18 C -0.068 4.068 19 C -0.132 4.132 20 C -0.101 4.101 21 C -0.158 4.158 22 C 0.096 3.904 23 O -0.513 6.513 24 C -0.155 4.155 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.409 0.591 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.409 0.591 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 3.791 23.689 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.365 5.365 14 C 0.290 3.710 15 O -0.475 6.475 16 C -0.163 4.163 17 C -0.097 4.097 18 C -0.068 4.068 19 C -0.150 4.150 20 C -0.118 4.118 21 C -0.176 4.176 22 C 0.052 3.948 23 O -0.326 6.326 24 C -0.174 4.174 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.246 0.754 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.159 0.841 42 H 0.268 0.732 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.753 3.633 23.228 23.576 hybrid contribution 0.202 -0.747 -1.001 1.265 sum -1.551 2.885 22.227 22.467 Atomic orbital electron populations 1.21680 0.97177 0.98631 1.00452 1.18352 0.93199 0.93061 0.90340 1.21677 0.97941 0.97835 1.00471 1.21291 1.31706 1.12138 0.91667 0.93822 1.25457 0.95170 0.95589 1.00981 1.69906 1.37013 1.23283 1.23612 0.85764 0.78653 0.78501 0.79923 1.20510 1.20770 1.20093 1.21236 0.96922 0.95010 0.84502 1.46195 1.52794 1.32005 1.05461 1.21375 0.79627 0.84271 0.85682 1.90652 1.40541 1.28744 1.87603 1.21646 1.03562 1.01194 0.89930 1.20241 1.01342 0.98436 0.89672 1.19758 0.94245 0.96503 0.96293 1.21358 1.00873 0.96015 0.96768 1.21334 0.95500 0.99640 0.95366 1.21660 0.95167 0.98846 1.01931 1.18608 0.85994 0.96051 0.94129 1.84777 1.27063 1.61360 1.59438 1.21455 0.96495 1.01763 0.97679 0.94326 0.91915 0.96395 0.96284 0.91929 0.94276 0.93020 0.94470 0.94585 0.75374 0.87256 0.86632 0.90586 0.91268 0.84395 0.83185 0.84072 0.73226 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 4 C -0.53 -28.13 8.01 25.60 0.21 -27.92 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.47 5.15 84.66 0.44 1.90 16 7 N -0.90 -48.05 9.35 21.45 0.20 -47.85 16 8 Si 0.94 42.72 29.54 68.60 2.03 44.75 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.15 6.26 4.50 86.38 0.39 6.65 16 13 N -0.71 -24.00 4.96 -463.06 -2.30 -26.30 16 14 C 0.50 16.12 7.83 87.66 0.69 16.80 16 15 O -0.59 -24.04 15.98 -3.03 -0.05 -24.09 16 16 C -0.12 -2.67 5.68 29.85 0.17 -2.50 16 17 C -0.06 -1.27 4.63 29.85 0.14 -1.13 16 18 C -0.07 -1.27 5.13 -19.88 -0.10 -1.37 16 19 C -0.13 -2.13 9.70 22.28 0.22 -1.91 16 20 C -0.10 -1.40 10.04 22.25 0.22 -1.17 16 21 C -0.16 -2.38 9.99 22.37 0.22 -2.16 16 22 C 0.10 1.70 6.70 22.51 0.15 1.85 16 23 O -0.51 -8.12 13.50 -92.48 -1.25 -9.36 16 24 C -0.16 -2.94 9.64 22.36 0.22 -2.72 16 25 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 26 H 0.06 3.10 6.07 -2.38 -0.01 3.09 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 30 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 31 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.41 11.87 6.16 -92.71 -0.57 11.30 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.08 1.72 8.04 -2.39 -0.02 1.70 16 38 H 0.07 1.63 8.04 -2.39 -0.02 1.62 16 39 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.41 2.45 9.06 -74.05 -0.67 1.78 16 43 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -65.39 352.63 2.50 -62.89 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.23 Total: 20.90 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 4.09 Total: -20.94 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -2.10 Total: -74.14 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.30 Total: -33.45 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -65.39 2.50 -62.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352281565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.564 kcal (2) G-P(sol) polarization free energy of solvation -65.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds