Wall clock time and date at job start Tue Mar 31 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00035 * 2 1 4 4 C 1.53002 * 109.46819 * 59.99897 * 3 2 1 5 5 C 1.53001 * 109.47091 * 300.00021 * 3 2 1 6 6 C 1.53002 * 109.47214 * 179.97438 * 3 2 1 7 7 N 1.46496 * 109.47058 * 64.99967 * 6 3 2 8 8 C 1.34780 * 119.99791 * 180.02562 * 7 6 3 9 9 O 1.21280 * 120.00256 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99747 * 180.02562 * 8 7 6 11 11 H 1.08998 * 109.46980 * 322.43904 * 10 8 7 12 12 C 1.50701 * 109.47306 * 82.44439 * 10 8 7 13 13 H 1.07999 * 119.99873 * 54.77561 * 12 10 8 14 14 C 1.37875 * 119.99873 * 234.78093 * 12 10 8 15 15 N 1.31512 * 120.00004 * 175.92248 * 14 12 10 16 16 Si 1.86805 * 120.00160 * 355.92016 * 14 12 10 17 17 H 1.48502 * 109.46774 * 83.73241 * 16 14 12 18 18 H 1.48499 * 109.47317 * 203.73357 * 16 14 12 19 19 H 1.48498 * 109.47119 * 323.73985 * 16 14 12 20 20 C 1.50704 * 109.46887 * 202.44320 * 10 8 7 21 21 C 1.38237 * 119.99804 * 112.25375 * 20 10 8 22 22 C 1.38240 * 119.99614 * 179.97438 * 21 20 10 23 23 C 1.38227 * 120.00021 * 359.95755 * 22 21 20 24 24 C 1.38233 * 120.00409 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00024 * 292.23336 * 20 10 8 26 26 H 1.09004 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47252 * 300.00117 * 1 2 3 28 28 H 1.09005 * 109.46982 * 60.00090 * 1 2 3 29 29 H 1.09004 * 109.46708 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47251 * 299.99895 * 4 3 2 31 31 H 1.08996 * 109.47197 * 60.00183 * 4 3 2 32 32 H 1.08999 * 109.46870 * 299.99906 * 5 3 2 33 33 H 1.09000 * 109.47260 * 59.99933 * 5 3 2 34 34 H 1.09000 * 109.47005 * 180.02562 * 5 3 2 35 35 H 1.09006 * 109.46959 * 304.99867 * 6 3 2 36 36 H 1.08992 * 109.47090 * 185.00316 * 6 3 2 37 37 H 0.97003 * 119.99972 * 359.97438 * 7 6 3 38 38 H 0.97008 * 119.99858 * 179.97438 * 15 14 12 39 39 H 1.07995 * 120.00182 * 359.97438 * 21 20 10 40 40 H 1.07996 * 119.99452 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00014 * 179.72265 * 23 22 21 42 42 H 1.08005 * 120.00725 * 179.97438 * 24 23 22 43 43 H 1.08006 * 119.99812 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1847 0.0006 7 7 3.9767 0.5640 -1.2508 8 6 5.2895 0.3551 -1.4732 9 8 6.1056 0.6814 -0.6375 10 6 5.7434 -0.2828 -2.7609 11 1 5.0330 -1.0560 -3.0534 12 6 5.8188 0.7650 -3.8414 13 1 6.4105 1.6556 -3.6895 14 6 5.1324 0.5866 -5.0237 15 7 5.1328 1.5358 -5.9340 16 14 4.2019 -1.0034 -5.3329 17 1 2.8606 -0.9229 -4.7006 18 1 4.0481 -1.2107 -6.7953 19 1 4.9571 -2.1406 -4.7483 20 6 7.1042 -0.8997 -2.5634 21 6 7.2522 -2.2736 -2.6004 22 6 8.5005 -2.8394 -2.4199 23 6 9.6008 -2.0312 -2.2032 24 6 9.4530 -0.6573 -2.1676 25 6 8.2043 -0.0916 -2.3458 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.0017 3.0607 1.2490 30 1 0.4721 2.1508 1.2492 31 1 1.8803 1.5238 2.1392 32 1 1.8804 1.5238 -2.1392 33 1 0.4722 2.1508 -1.2493 34 1 2.0025 3.0604 -1.2495 35 1 3.8508 0.5685 0.8428 36 1 3.9784 2.1765 0.0903 37 1 3.3239 0.3027 -1.9191 38 1 4.6502 1.4101 -6.7660 39 1 6.3926 -2.9049 -2.7704 40 1 8.6160 -3.9128 -2.4484 41 1 10.5753 -2.4734 -2.0576 42 1 10.3126 -0.0258 -1.9979 43 1 8.0888 0.9819 -2.3176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539063558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:03 Heat of formation + Delta-G solvation = -65.897140 kcal Electronic energy + Delta-G solvation = -23875.548518 eV Core-core repulsion = 20499.535042 eV Total energy + Delta-G solvation = -3376.013475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.61156 -38.83095 -37.66178 -34.40864 -33.56923 -31.96736 -31.47509 -30.09001 -28.09189 -27.52658 -27.18667 -25.40989 -23.36062 -21.80298 -20.95507 -20.02370 -19.23456 -17.14482 -16.84669 -16.24085 -16.04534 -15.57149 -15.13154 -14.76283 -14.65662 -14.17917 -13.98994 -13.76240 -13.24292 -13.08007 -12.87615 -12.69075 -12.53710 -12.45642 -12.12667 -12.01980 -12.00683 -11.69894 -11.51430 -11.32109 -11.09542 -11.05708 -10.54587 -10.44012 -10.10944 -9.97465 -9.63417 -9.47818 -8.99641 -8.66476 -8.34284 -8.09381 -7.77918 -6.29372 -4.31560 2.18192 2.25406 3.11656 3.23600 3.25282 3.66142 3.73769 3.97835 4.21114 4.66830 4.68929 4.89250 4.94746 5.06613 5.22765 5.29087 5.44695 5.51486 5.58350 5.62467 5.62718 5.72768 5.74759 5.79112 5.91492 5.98023 6.00676 6.05324 6.18137 6.24077 6.32482 6.41529 6.45198 6.77767 6.90356 7.12264 7.20653 7.21762 7.29623 7.32568 7.64042 7.83544 8.20411 8.37855 8.74601 9.19355 9.28332 10.82027 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.005694 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.247876 B = 4916.044825 C = 5894.530945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.099 3.901 4 C -0.174 4.174 5 C -0.180 4.180 6 C 0.139 3.861 7 N -0.728 5.728 8 C 0.532 3.468 9 O -0.562 6.562 10 C 0.031 3.969 11 H 0.059 0.941 12 C -0.503 4.503 13 H 0.084 0.916 14 C 0.082 3.918 15 N -0.883 5.883 16 Si 0.866 3.134 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.031 4.031 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.132 4.132 25 C -0.068 4.068 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.400 0.600 38 H 0.269 0.731 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 -2.871 9.589 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.294 6.294 3 C 0.059 3.941 4 C -0.232 4.232 5 C -0.238 4.238 6 C 0.015 3.985 7 N -0.381 5.381 8 C 0.321 3.679 9 O -0.440 6.440 10 C 0.010 3.990 11 H 0.077 0.923 12 C -0.540 4.540 13 H 0.102 0.898 14 C -0.123 4.123 15 N -0.518 5.518 16 Si 0.692 3.308 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.032 4.032 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.087 4.087 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.236 0.764 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.549 -2.726 9.990 12.252 hybrid contribution -1.154 -0.627 -0.741 1.508 sum -7.703 -3.353 9.248 12.494 Atomic orbital electron populations 1.22782 0.81842 1.02492 1.00070 1.88032 1.19253 1.27096 1.95005 1.21800 0.93592 0.83671 0.95012 1.22339 1.01793 1.01154 0.97917 1.22429 1.01372 1.01630 0.98365 1.21169 0.89864 0.99032 0.88464 1.45912 1.08323 1.64244 1.19642 1.21442 0.81038 0.77472 0.87961 1.90564 1.52944 1.53139 1.47378 1.18363 0.91477 0.96785 0.92408 0.92252 1.20555 1.31331 1.04625 0.97523 0.89809 1.25049 0.95402 0.96143 0.95696 1.69861 1.41539 1.32470 1.07947 0.87008 0.80682 0.84960 0.78144 1.19589 1.20943 1.18452 1.19981 0.96415 0.92352 0.94413 1.21013 0.97061 0.94721 1.02361 1.20875 0.93078 0.98724 1.02259 1.20871 0.97872 0.93960 1.03345 1.21055 0.97286 0.94775 1.01888 1.20924 0.91380 1.00226 0.96128 0.89902 0.93972 0.93730 0.91051 0.91919 0.91509 0.90963 0.92215 0.90876 0.91409 0.90539 0.76447 0.92123 0.87238 0.87283 0.87367 0.87116 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.21 101.05 1.03 1.28 16 2 O -0.37 -5.16 10.29 -35.23 -0.36 -5.53 16 3 C 0.10 1.28 0.80 -90.62 -0.07 1.21 16 4 C -0.17 -1.77 8.25 37.16 0.31 -1.46 16 5 C -0.18 -2.29 8.02 37.16 0.30 -2.00 16 6 C 0.14 2.23 4.84 -4.04 -0.02 2.21 16 7 N -0.73 -13.94 5.19 -60.29 -0.31 -14.25 16 8 C 0.53 12.00 6.93 -10.98 -0.08 11.93 16 9 O -0.56 -13.77 15.23 5.56 0.08 -13.69 16 10 C 0.03 0.74 2.22 -94.07 -0.21 0.53 16 11 H 0.06 1.34 4.57 -51.93 -0.24 1.11 16 12 C -0.50 -13.33 8.24 -34.44 -0.28 -13.61 16 13 H 0.08 2.47 7.69 -52.49 -0.40 2.07 16 14 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 15 N -0.88 -25.14 13.96 55.43 0.77 -24.37 16 16 Si 0.87 19.75 26.93 -169.99 -4.58 15.17 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.26 -5.76 6.81 56.52 0.39 -5.38 16 20 C -0.03 -0.70 4.53 -104.62 -0.47 -1.17 16 21 C -0.13 -2.73 9.67 -39.58 -0.38 -3.11 16 22 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 23 C -0.14 -2.50 10.05 -39.59 -0.40 -2.90 16 24 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 25 C -0.07 -1.52 8.05 -39.58 -0.32 -1.84 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.36 6.42 -51.93 -0.33 0.03 16 28 H 0.04 0.43 6.42 -51.93 -0.33 0.09 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.06 6.58 -51.93 -0.34 0.72 16 33 H 0.06 0.64 6.54 -51.93 -0.34 0.30 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.40 7.43 6.99 -40.82 -0.29 7.14 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.11 2.08 7.96 -52.49 -0.42 1.66 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.12 2.82 7.44 -52.48 -0.39 2.43 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -30.76 348.48 -7.01 -37.77 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -6.38 Total: 12.18 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.49 Total: -12.54 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.46 Total: -38.62 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.28 Total: -19.21 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.58 Total: 15.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.76 -7.01 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539063558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.130 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds