Wall clock time and date at job start Tue Mar 31 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00035 * 2 1 4 4 C 1.53002 * 109.46819 * 59.99897 * 3 2 1 5 5 C 1.53001 * 109.47091 * 300.00021 * 3 2 1 6 6 C 1.53002 * 109.47214 * 179.97438 * 3 2 1 7 7 N 1.46496 * 109.47058 * 64.99967 * 6 3 2 8 8 C 1.34780 * 119.99791 * 180.02562 * 7 6 3 9 9 O 1.21280 * 120.00256 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99747 * 180.02562 * 8 7 6 11 11 H 1.08998 * 109.46980 * 322.43904 * 10 8 7 12 12 C 1.50701 * 109.47306 * 82.44439 * 10 8 7 13 13 H 1.07999 * 119.99873 * 54.77561 * 12 10 8 14 14 C 1.37875 * 119.99873 * 234.78093 * 12 10 8 15 15 N 1.31512 * 120.00004 * 175.92248 * 14 12 10 16 16 Si 1.86805 * 120.00160 * 355.92016 * 14 12 10 17 17 H 1.48502 * 109.46774 * 83.73241 * 16 14 12 18 18 H 1.48499 * 109.47317 * 203.73357 * 16 14 12 19 19 H 1.48498 * 109.47119 * 323.73985 * 16 14 12 20 20 C 1.50704 * 109.46887 * 202.44320 * 10 8 7 21 21 C 1.38237 * 119.99804 * 112.25375 * 20 10 8 22 22 C 1.38240 * 119.99614 * 179.97438 * 21 20 10 23 23 C 1.38227 * 120.00021 * 359.95755 * 22 21 20 24 24 C 1.38233 * 120.00409 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00024 * 292.23336 * 20 10 8 26 26 H 1.09004 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47252 * 300.00117 * 1 2 3 28 28 H 1.09005 * 109.46982 * 60.00090 * 1 2 3 29 29 H 1.09004 * 109.46708 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47251 * 299.99895 * 4 3 2 31 31 H 1.08996 * 109.47197 * 60.00183 * 4 3 2 32 32 H 1.08999 * 109.46870 * 299.99906 * 5 3 2 33 33 H 1.09000 * 109.47260 * 59.99933 * 5 3 2 34 34 H 1.09000 * 109.47005 * 180.02562 * 5 3 2 35 35 H 1.09006 * 109.46959 * 304.99867 * 6 3 2 36 36 H 1.08992 * 109.47090 * 185.00316 * 6 3 2 37 37 H 0.97003 * 119.99972 * 359.97438 * 7 6 3 38 38 H 0.97008 * 119.99858 * 179.97438 * 15 14 12 39 39 H 1.07995 * 120.00182 * 359.97438 * 21 20 10 40 40 H 1.07996 * 119.99452 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00014 * 179.72265 * 23 22 21 42 42 H 1.08005 * 120.00725 * 179.97438 * 24 23 22 43 43 H 1.08006 * 119.99812 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1847 0.0006 7 7 3.9767 0.5640 -1.2508 8 6 5.2895 0.3551 -1.4732 9 8 6.1056 0.6814 -0.6375 10 6 5.7434 -0.2828 -2.7609 11 1 5.0330 -1.0560 -3.0534 12 6 5.8188 0.7650 -3.8414 13 1 6.4105 1.6556 -3.6895 14 6 5.1324 0.5866 -5.0237 15 7 5.1328 1.5358 -5.9340 16 14 4.2019 -1.0034 -5.3329 17 1 2.8606 -0.9229 -4.7006 18 1 4.0481 -1.2107 -6.7953 19 1 4.9571 -2.1406 -4.7483 20 6 7.1042 -0.8997 -2.5634 21 6 7.2522 -2.2736 -2.6004 22 6 8.5005 -2.8394 -2.4199 23 6 9.6008 -2.0312 -2.2032 24 6 9.4530 -0.6573 -2.1676 25 6 8.2043 -0.0916 -2.3458 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.0017 3.0607 1.2490 30 1 0.4721 2.1508 1.2492 31 1 1.8803 1.5238 2.1392 32 1 1.8804 1.5238 -2.1392 33 1 0.4722 2.1508 -1.2493 34 1 2.0025 3.0604 -1.2495 35 1 3.8508 0.5685 0.8428 36 1 3.9784 2.1765 0.0903 37 1 3.3239 0.3027 -1.9191 38 1 4.6502 1.4101 -6.7660 39 1 6.3926 -2.9049 -2.7704 40 1 8.6160 -3.9128 -2.4484 41 1 10.5753 -2.4734 -2.0576 42 1 10.3126 -0.0258 -1.9979 43 1 8.0888 0.9819 -2.3176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001539063558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:03 Heat of formation + Delta-G solvation = -86.066299 kcal Electronic energy + Delta-G solvation = -23876.423118 eV Core-core repulsion = 20499.535042 eV Total energy + Delta-G solvation = -3376.888075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11486 -40.11008 -39.19211 -35.78471 -35.49972 -33.47387 -33.06469 -31.61772 -29.68730 -28.53263 -28.18011 -26.74683 -25.15965 -23.35465 -22.50688 -21.21738 -20.80321 -19.14549 -18.23769 -17.76017 -17.41252 -16.90190 -16.47260 -16.09292 -15.99166 -15.74003 -15.54940 -15.23299 -14.80549 -14.46388 -14.27921 -14.12373 -13.95981 -13.71082 -13.64382 -13.34173 -13.17064 -12.90485 -12.87066 -12.77646 -12.49001 -12.26991 -12.05559 -11.92474 -11.69830 -11.53496 -11.40243 -10.91852 -10.62729 -10.50548 -9.95840 -9.63294 -9.37013 -8.36786 -6.44889 0.64080 0.71320 1.31253 1.36914 1.45529 1.89745 2.28102 2.42207 2.76119 2.98756 3.16500 3.63412 3.85503 3.95710 4.07286 4.23114 4.27223 4.38919 4.42377 4.46297 4.47679 4.51848 4.57657 4.62965 4.67799 4.74492 4.83699 4.84875 4.89313 4.90241 4.98247 5.15831 5.20530 5.29770 5.33850 5.38728 5.59972 5.70500 5.75574 5.95614 6.19449 6.26832 6.31583 6.57212 6.67621 7.18755 7.44368 8.78516 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.005694 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.247876 B = 4916.044825 C = 5894.530945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.400 6.400 3 C 0.105 3.895 4 C -0.169 4.169 5 C -0.180 4.180 6 C 0.134 3.866 7 N -0.719 5.719 8 C 0.526 3.474 9 O -0.588 6.588 10 C 0.034 3.966 11 H 0.069 0.931 12 C -0.503 4.503 13 H 0.032 0.968 14 C 0.032 3.968 15 N -0.931 5.931 16 Si 0.925 3.075 17 H -0.246 1.246 18 H -0.283 1.283 19 H -0.246 1.246 20 C -0.064 4.064 21 C -0.147 4.147 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.099 4.099 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.404 0.596 38 H 0.272 0.728 39 H 0.123 0.877 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.134 0.866 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 -5.515 10.595 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.320 6.320 3 C 0.066 3.934 4 C -0.227 4.227 5 C -0.237 4.237 6 C 0.010 3.990 7 N -0.370 5.370 8 C 0.315 3.685 9 O -0.469 6.469 10 C 0.013 3.987 11 H 0.087 0.913 12 C -0.540 4.540 13 H 0.051 0.949 14 C -0.168 4.168 15 N -0.568 5.568 16 Si 0.748 3.252 17 H -0.169 1.169 18 H -0.209 1.209 19 H -0.169 1.169 20 C -0.065 4.065 21 C -0.165 4.165 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.154 4.154 25 C -0.118 4.118 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.240 0.760 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.152 0.848 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.538 -5.366 11.020 14.390 hybrid contribution -0.769 0.236 -0.994 1.279 sum -8.307 -5.131 10.026 13.995 Atomic orbital electron populations 1.23004 0.79866 1.03694 1.01239 1.87986 1.21426 1.27291 1.95254 1.21697 0.91127 0.84091 0.96524 1.22305 1.03168 1.00971 0.96212 1.22425 1.03025 1.01063 0.97202 1.21367 0.92696 0.98247 0.86645 1.45876 1.07196 1.63253 1.20709 1.21343 0.82019 0.77480 0.87650 1.90532 1.53904 1.54319 1.48144 1.18281 0.92778 0.95996 0.91665 0.91281 1.20470 1.30499 1.03963 0.99084 0.94940 1.25853 0.96275 0.99678 0.95033 1.70003 1.43200 1.34902 1.08726 0.86041 0.80459 0.80603 0.78130 1.16938 1.20929 1.16943 1.20040 0.95796 0.93872 0.96784 1.21269 0.99025 0.93642 1.02606 1.21362 0.91906 1.00926 0.99971 1.21367 0.99813 0.92940 1.00993 1.21364 0.96568 0.96408 1.01015 1.20847 0.93331 0.98810 0.98797 0.88839 0.92092 0.93175 0.90355 0.89774 0.91342 0.93350 0.89671 0.91021 0.91939 0.90997 0.76037 0.91909 0.85884 0.83167 0.83055 0.84834 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.21 113.37 1.16 1.47 16 2 O -0.40 -10.36 10.29 -148.98 -1.53 -11.90 16 3 C 0.11 2.61 0.80 -10.79 -0.01 2.60 16 4 C -0.17 -3.07 8.25 71.98 0.59 -2.48 16 5 C -0.18 -4.40 8.02 71.98 0.58 -3.82 16 6 C 0.13 4.36 4.84 86.38 0.42 4.78 16 7 N -0.72 -28.20 5.19 -463.06 -2.40 -30.60 16 8 C 0.53 24.74 6.93 87.66 0.61 25.34 16 9 O -0.59 -30.28 15.23 -3.03 -0.05 -30.33 16 10 C 0.03 1.66 2.22 -13.03 -0.03 1.63 16 11 H 0.07 3.11 4.57 -2.39 -0.01 3.10 16 12 C -0.50 -28.19 8.24 25.60 0.21 -27.98 16 13 H 0.03 2.09 7.69 -2.91 -0.02 2.07 16 14 C 0.03 1.75 5.47 84.65 0.46 2.21 16 15 N -0.93 -55.29 13.96 21.45 0.30 -54.99 16 16 Si 0.93 40.53 26.93 68.60 1.85 42.38 16 17 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.25 -10.14 6.81 99.48 0.68 -9.46 16 20 C -0.06 -2.98 4.53 -19.87 -0.09 -3.07 16 21 C -0.15 -5.80 9.67 22.27 0.22 -5.58 16 22 C -0.12 -4.02 10.05 22.27 0.22 -3.80 16 23 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 24 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 25 C -0.10 -4.61 8.05 22.27 0.18 -4.43 16 26 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.06 0.84 6.42 -2.39 -0.02 0.83 16 28 H 0.05 0.82 6.42 -2.38 -0.02 0.81 16 29 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.08 1.19 6.54 -2.39 -0.02 1.17 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.41 6.58 -2.39 -0.02 1.39 16 33 H 0.08 1.63 6.54 -2.39 -0.02 1.61 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.40 15.17 6.99 -92.71 -0.65 14.52 16 38 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 39 H 0.12 4.38 7.96 -2.91 -0.02 4.36 16 40 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 42 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 43 H 0.09 4.48 7.44 -2.91 -0.02 4.46 16 Total: -1.00 -71.03 348.48 3.46 -67.57 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: 0.33 Total: 39.83 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 4.97 Total: -21.97 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -2.10 Total: -85.59 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -1.58 Total: -42.22 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.85 Total: 42.38 kcal Total: -71.03 3.46 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539063558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.495 kcal (2) G-P(sol) polarization free energy of solvation -71.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds