Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00171 * 2 1 4 4 C 1.52997 * 109.47026 * 270.00082 * 3 2 1 5 5 C 1.52998 * 109.47162 * 184.99915 * 4 3 2 6 6 C 1.53002 * 109.46798 * 304.99717 * 4 3 2 7 7 O 1.42902 * 109.47491 * 64.99513 * 4 3 2 8 8 C 1.34771 * 119.99924 * 179.97438 * 2 1 3 9 9 O 1.21287 * 119.99817 * 174.45042 * 8 2 1 10 10 C 1.50701 * 120.00481 * 354.45182 * 8 2 1 11 11 H 1.09003 * 109.46855 * 327.81775 * 10 8 2 12 12 C 1.50694 * 109.47076 * 87.81317 * 10 8 2 13 13 H 1.07999 * 120.00660 * 235.90956 * 12 10 8 14 14 C 1.37887 * 119.99833 * 55.91904 * 12 10 8 15 15 N 1.31514 * 119.99928 * 12.79377 * 14 12 10 16 16 Si 1.86801 * 119.99879 * 192.80032 * 14 12 10 17 17 H 1.48492 * 109.47456 * 59.99437 * 16 14 12 18 18 H 1.48494 * 109.47049 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46902 * 299.99634 * 16 14 12 20 20 C 1.50700 * 109.47451 * 207.81798 * 10 8 2 21 21 C 1.38237 * 119.99732 * 40.28261 * 20 10 8 22 22 C 1.38234 * 119.99632 * 180.02562 * 21 20 10 23 23 C 1.38230 * 120.00140 * 359.95234 * 22 21 20 24 24 C 1.38236 * 120.00382 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00126 * 220.26031 * 20 10 8 26 26 H 1.08991 * 109.47565 * 269.72621 * 1 2 3 27 27 H 1.08998 * 109.47302 * 29.72744 * 1 2 3 28 28 H 1.09001 * 109.46878 * 149.71944 * 1 2 3 29 29 H 1.09007 * 109.46469 * 29.99215 * 3 2 1 30 30 H 1.08991 * 109.47294 * 149.99636 * 3 2 1 31 31 H 1.09003 * 109.47340 * 59.99608 * 5 4 3 32 32 H 1.09005 * 109.47286 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.46930 * 299.99553 * 5 4 3 34 34 H 1.09001 * 109.47346 * 60.00169 * 6 4 3 35 35 H 1.09000 * 109.47449 * 180.02562 * 6 4 3 36 36 H 1.09003 * 109.47016 * 299.99971 * 6 4 3 37 37 H 0.96698 * 113.99949 * 60.00004 * 7 4 3 38 38 H 0.96994 * 119.99576 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.00394 * 359.97399 * 21 20 10 40 40 H 1.08006 * 119.99533 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.00083 * 179.72291 * 23 22 21 42 42 H 1.07990 * 120.00248 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.99547 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.3238 2.9680 -1.4443 6 6 3.1708 0.5912 -2.1990 7 8 1.2061 1.9935 -2.0815 8 6 2.1388 -1.1672 0.0005 9 8 3.3474 -1.1696 -0.1011 10 6 1.3907 -2.4692 0.1273 11 1 0.5046 -2.3205 0.7445 12 6 0.9756 -2.9453 -1.2409 13 1 -0.0644 -3.1485 -1.4496 14 6 1.9237 -3.1217 -2.2264 15 7 3.2019 -3.1219 -1.9168 16 14 1.3926 -3.3604 -4.0014 17 1 0.6235 -2.1727 -4.4519 18 1 2.5932 -3.5266 -4.8592 19 1 0.5388 -4.5710 -4.1040 20 6 2.2825 -3.5007 0.7690 21 6 3.1088 -3.1434 1.8181 22 6 3.9272 -4.0894 2.4063 23 6 3.9187 -5.3928 1.9462 24 6 3.0922 -5.7503 0.8974 25 6 2.2740 -4.8041 0.3088 26 1 -0.3634 -0.0049 1.0275 27 1 -0.3634 0.8924 -0.5096 28 1 -0.3633 -0.8875 -0.5182 29 1 1.6083 2.0284 0.5138 30 1 3.1498 1.1384 0.5138 31 1 4.2746 2.7521 -0.9570 32 1 3.5059 3.2824 -2.4721 33 1 2.8121 3.7653 -0.9054 34 1 2.5501 -0.3048 -2.1977 35 1 3.3529 0.9059 -3.2266 36 1 4.1216 0.3753 -1.7117 37 1 0.6955 2.6949 -1.6544 38 1 3.8688 -3.2457 -2.6102 39 1 3.1155 -2.1250 2.1776 40 1 4.5731 -3.8101 3.2257 41 1 4.5615 -6.1309 2.4029 42 1 3.0858 -6.7685 0.5377 43 1 1.6285 -5.0832 -0.5108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566196648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -53.143550 kcal Electronic energy + Delta-G solvation = -25192.269737 eV Core-core repulsion = 21816.809299 eV Total energy + Delta-G solvation = -3375.460438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.44984 -38.09198 -36.87574 -34.05099 -33.49629 -31.98197 -30.73559 -29.65385 -27.73416 -26.85446 -26.50706 -25.09235 -23.43854 -21.28358 -20.57795 -19.85549 -18.34699 -16.80988 -16.17117 -15.85021 -15.57477 -15.00816 -14.68040 -14.58667 -14.31298 -13.74701 -13.59390 -13.12826 -12.56883 -12.42912 -12.29004 -12.15169 -12.07653 -11.87465 -11.76891 -11.56026 -11.41618 -11.24957 -11.15127 -10.90481 -10.86977 -10.68333 -10.33176 -10.24288 -10.02016 -9.82807 -9.61583 -9.35667 -8.48058 -8.19432 -7.70729 -7.55529 -7.33913 -5.99162 -4.15513 2.58784 2.65633 3.29389 3.36593 3.40102 3.96157 4.19437 4.42165 4.62477 5.03445 5.14399 5.24072 5.29634 5.34943 5.58876 5.85504 5.87720 5.89757 5.96571 6.00757 6.08052 6.13319 6.19299 6.26831 6.38576 6.49504 6.54872 6.58613 6.69134 6.72444 6.78141 6.89938 7.18543 7.24245 7.25990 7.50709 7.57877 7.69543 7.77890 7.87864 8.01339 8.20934 8.32124 8.49860 8.84131 9.48015 9.69898 10.95853 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.007451 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.897700 B = 3757.087448 C = 4723.088745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.626 5.626 3 C 0.099 3.901 4 C 0.111 3.889 5 C -0.174 4.174 6 C -0.129 4.129 7 O -0.553 6.553 8 C 0.531 3.469 9 O -0.512 6.512 10 C 0.064 3.936 11 H 0.049 0.951 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.080 3.920 15 N -0.812 5.812 16 Si 0.874 3.126 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.002 4.002 21 C -0.114 4.114 22 C -0.139 4.139 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.059 4.059 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.361 0.639 38 H 0.262 0.738 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 6.978 4.834 8.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.362 5.362 3 C -0.025 4.025 4 C 0.069 3.931 5 C -0.232 4.232 6 C -0.186 4.186 7 O -0.357 6.357 8 C 0.321 3.679 9 O -0.384 6.384 10 C 0.043 3.957 11 H 0.067 0.933 12 C -0.582 4.582 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.443 5.443 16 Si 0.701 3.299 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.003 4.003 21 C -0.132 4.132 22 C -0.158 4.158 23 C -0.166 4.166 24 C -0.161 4.161 25 C -0.077 4.077 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.207 0.793 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.829 6.441 4.314 7.965 hybrid contribution -0.226 0.573 -0.900 1.091 sum -2.055 7.014 3.414 8.067 Atomic orbital electron populations 1.21644 0.80663 1.03500 0.99568 1.47839 1.06251 1.05016 1.77098 1.21869 0.98031 0.86863 0.95740 1.21803 0.83725 0.94423 0.93130 1.22445 1.00797 0.97708 1.02244 1.21765 1.01014 0.98029 0.97769 1.86686 1.32880 1.59229 1.56949 1.21370 0.88026 0.84515 0.73989 1.90600 1.14469 1.86336 1.47037 1.17894 0.92688 0.88125 0.97042 0.93272 1.20448 0.94038 1.49667 0.94051 0.91746 1.24986 0.94971 0.94696 0.98390 1.70200 0.99415 1.42060 1.32586 0.86942 0.78287 0.78834 0.85870 1.19965 1.21357 1.20191 1.19868 0.94751 0.94599 0.91116 1.20842 0.97449 0.97659 0.97292 1.20753 1.00408 0.93827 1.00763 1.20727 1.00838 0.95958 0.99088 1.20972 0.98736 0.98758 0.97634 1.21003 0.97276 0.92417 0.97014 0.94819 0.92556 0.89620 0.92046 0.90127 0.91639 0.92136 0.92951 0.89577 0.94467 0.90667 0.79319 0.92766 0.88395 0.88305 0.88324 0.88126 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 9.57 59.85 0.57 2.03 16 2 N -0.63 -11.86 2.53 -181.58 -0.46 -12.32 16 3 C 0.10 1.62 4.75 -4.04 -0.02 1.60 16 4 C 0.11 1.82 1.18 -90.62 -0.11 1.71 16 5 C -0.17 -2.27 8.81 37.16 0.33 -1.94 16 6 C -0.13 -2.66 7.40 37.16 0.27 -2.39 16 7 O -0.55 -8.86 11.81 -35.23 -0.42 -9.28 16 8 C 0.53 12.06 3.82 -10.99 -0.04 12.02 16 9 O -0.51 -13.01 11.07 5.55 0.06 -12.95 16 10 C 0.06 1.48 1.98 -94.08 -0.19 1.29 16 11 H 0.05 1.06 7.02 -51.93 -0.36 0.69 16 12 C -0.54 -13.46 6.23 -34.44 -0.21 -13.68 16 13 H 0.06 1.56 7.85 -52.49 -0.41 1.15 16 14 C 0.08 2.05 4.34 -17.82 -0.08 1.98 16 15 N -0.81 -22.05 9.89 55.43 0.55 -21.51 16 16 Si 0.87 20.56 29.56 -169.99 -5.02 15.54 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.00 -0.05 4.22 -104.62 -0.44 -0.50 16 21 C -0.11 -2.55 8.44 -39.58 -0.33 -2.89 16 22 C -0.14 -2.84 10.05 -39.59 -0.40 -3.24 16 23 C -0.15 -2.92 10.05 -39.59 -0.40 -3.32 16 24 C -0.14 -2.97 10.05 -39.58 -0.40 -3.37 16 25 C -0.06 -1.37 8.09 -39.58 -0.32 -1.69 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.79 7.11 -51.93 -0.37 0.42 16 28 H 0.09 1.55 6.08 -51.93 -0.32 1.23 16 29 H 0.06 0.80 8.07 -51.92 -0.42 0.38 16 30 H 0.08 1.41 7.50 -51.93 -0.39 1.02 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 2.13 6.12 -51.93 -0.32 1.81 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.64 7.31 -51.93 -0.38 1.26 16 37 H 0.36 4.06 9.04 45.56 0.41 4.47 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.10 2.15 7.20 -52.49 -0.38 1.77 16 40 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 41 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 42 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.13 3.00 6.45 -52.49 -0.34 2.66 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -29.79 338.08 -7.74 -37.53 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.79 Total: 10.27 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -1.76 Total: -12.38 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.09 Total: -33.83 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.35 Total: -22.23 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.79 -7.74 -37.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566196648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.613 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds