Wall clock time and date at job start Tue Mar 31 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00171 * 2 1 4 4 C 1.52997 * 109.47026 * 270.00082 * 3 2 1 5 5 C 1.52998 * 109.47162 * 184.99915 * 4 3 2 6 6 C 1.53002 * 109.46798 * 304.99717 * 4 3 2 7 7 O 1.42902 * 109.47491 * 64.99513 * 4 3 2 8 8 C 1.34771 * 119.99924 * 179.97438 * 2 1 3 9 9 O 1.21287 * 119.99817 * 174.45042 * 8 2 1 10 10 C 1.50701 * 120.00481 * 354.45182 * 8 2 1 11 11 H 1.09003 * 109.46855 * 327.81775 * 10 8 2 12 12 C 1.50694 * 109.47076 * 87.81317 * 10 8 2 13 13 H 1.07999 * 120.00660 * 235.90956 * 12 10 8 14 14 C 1.37887 * 119.99833 * 55.91904 * 12 10 8 15 15 N 1.31514 * 119.99928 * 12.79377 * 14 12 10 16 16 Si 1.86801 * 119.99879 * 192.80032 * 14 12 10 17 17 H 1.48492 * 109.47456 * 59.99437 * 16 14 12 18 18 H 1.48494 * 109.47049 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46902 * 299.99634 * 16 14 12 20 20 C 1.50700 * 109.47451 * 207.81798 * 10 8 2 21 21 C 1.38237 * 119.99732 * 40.28261 * 20 10 8 22 22 C 1.38234 * 119.99632 * 180.02562 * 21 20 10 23 23 C 1.38230 * 120.00140 * 359.95234 * 22 21 20 24 24 C 1.38236 * 120.00382 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00126 * 220.26031 * 20 10 8 26 26 H 1.08991 * 109.47565 * 269.72621 * 1 2 3 27 27 H 1.08998 * 109.47302 * 29.72744 * 1 2 3 28 28 H 1.09001 * 109.46878 * 149.71944 * 1 2 3 29 29 H 1.09007 * 109.46469 * 29.99215 * 3 2 1 30 30 H 1.08991 * 109.47294 * 149.99636 * 3 2 1 31 31 H 1.09003 * 109.47340 * 59.99608 * 5 4 3 32 32 H 1.09005 * 109.47286 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.46930 * 299.99553 * 5 4 3 34 34 H 1.09001 * 109.47346 * 60.00169 * 6 4 3 35 35 H 1.09000 * 109.47449 * 180.02562 * 6 4 3 36 36 H 1.09003 * 109.47016 * 299.99971 * 6 4 3 37 37 H 0.96698 * 113.99949 * 60.00004 * 7 4 3 38 38 H 0.96994 * 119.99576 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.00394 * 359.97399 * 21 20 10 40 40 H 1.08006 * 119.99533 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.00083 * 179.72291 * 23 22 21 42 42 H 1.07990 * 120.00248 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.99547 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.3238 2.9680 -1.4443 6 6 3.1708 0.5912 -2.1990 7 8 1.2061 1.9935 -2.0815 8 6 2.1388 -1.1672 0.0005 9 8 3.3474 -1.1696 -0.1011 10 6 1.3907 -2.4692 0.1273 11 1 0.5046 -2.3205 0.7445 12 6 0.9756 -2.9453 -1.2409 13 1 -0.0644 -3.1485 -1.4496 14 6 1.9237 -3.1217 -2.2264 15 7 3.2019 -3.1219 -1.9168 16 14 1.3926 -3.3604 -4.0014 17 1 0.6235 -2.1727 -4.4519 18 1 2.5932 -3.5266 -4.8592 19 1 0.5388 -4.5710 -4.1040 20 6 2.2825 -3.5007 0.7690 21 6 3.1088 -3.1434 1.8181 22 6 3.9272 -4.0894 2.4063 23 6 3.9187 -5.3928 1.9462 24 6 3.0922 -5.7503 0.8974 25 6 2.2740 -4.8041 0.3088 26 1 -0.3634 -0.0049 1.0275 27 1 -0.3634 0.8924 -0.5096 28 1 -0.3633 -0.8875 -0.5182 29 1 1.6083 2.0284 0.5138 30 1 3.1498 1.1384 0.5138 31 1 4.2746 2.7521 -0.9570 32 1 3.5059 3.2824 -2.4721 33 1 2.8121 3.7653 -0.9054 34 1 2.5501 -0.3048 -2.1977 35 1 3.3529 0.9059 -3.2266 36 1 4.1216 0.3753 -1.7117 37 1 0.6955 2.6949 -1.6544 38 1 3.8688 -3.2457 -2.6102 39 1 3.1155 -2.1250 2.1776 40 1 4.5731 -3.8101 3.2257 41 1 4.5615 -6.1309 2.4029 42 1 3.0858 -6.7685 0.5377 43 1 1.6285 -5.0832 -0.5108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566196648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:15 Heat of formation + Delta-G solvation = -71.646439 kcal Electronic energy + Delta-G solvation = -25193.072083 eV Core-core repulsion = 21816.809299 eV Total energy + Delta-G solvation = -3376.262783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.03546 -39.62332 -38.37832 -35.58184 -35.34742 -33.35609 -32.48486 -31.32712 -29.35288 -28.22387 -27.97417 -26.66190 -25.17662 -22.96202 -22.17357 -21.25569 -19.97366 -18.56601 -17.58792 -17.45979 -17.20104 -16.57961 -16.45425 -16.05076 -15.69455 -15.35076 -15.30336 -14.60775 -14.17801 -14.02397 -13.82255 -13.70971 -13.60349 -13.28191 -13.22961 -13.06239 -12.91904 -12.82882 -12.76329 -12.61286 -12.48533 -12.32314 -12.11790 -11.76841 -11.64043 -11.38174 -11.16172 -11.10447 -10.44968 -9.95806 -9.36964 -9.05980 -9.02970 -7.96869 -6.14332 0.91730 0.99129 1.37221 1.43020 1.45093 2.35325 2.47914 2.64436 3.26308 3.36272 3.43321 3.90864 3.98072 4.13056 4.32667 4.38457 4.44153 4.53767 4.61097 4.66052 4.71434 4.74180 4.82988 4.90434 4.97460 4.99183 5.01680 5.05998 5.14585 5.19731 5.24214 5.26997 5.50883 5.55158 5.58594 5.75242 5.92153 6.00127 6.05212 6.10955 6.47639 6.57389 6.73179 7.00857 7.05248 7.49346 8.02092 8.95336 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.007451 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.897700 B = 3757.087448 C = 4723.088745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.627 5.627 3 C 0.098 3.902 4 C 0.117 3.883 5 C -0.164 4.164 6 C -0.121 4.121 7 O -0.569 6.569 8 C 0.531 3.469 9 O -0.546 6.546 10 C 0.057 3.943 11 H 0.058 0.942 12 C -0.540 4.540 13 H 0.062 0.938 14 C 0.051 3.949 15 N -0.834 5.834 16 Si 0.915 3.085 17 H -0.280 1.280 18 H -0.297 1.297 19 H -0.267 1.267 20 C -0.023 4.023 21 C -0.129 4.129 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.082 4.082 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.033 0.967 36 H 0.054 0.946 37 H 0.386 0.614 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.124 0.876 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 8.266 6.061 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.362 5.362 3 C -0.025 4.025 4 C 0.076 3.924 5 C -0.222 4.222 6 C -0.178 4.178 7 O -0.377 6.377 8 C 0.321 3.679 9 O -0.422 6.422 10 C 0.035 3.965 11 H 0.076 0.924 12 C -0.577 4.577 13 H 0.080 0.920 14 C -0.157 4.157 15 N -0.465 5.465 16 Si 0.742 3.258 17 H -0.206 1.206 18 H -0.223 1.223 19 H -0.192 1.192 20 C -0.024 4.024 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.165 4.165 25 C -0.100 4.100 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.235 0.765 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.142 0.858 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.423 7.758 5.550 9.842 hybrid contribution -0.128 0.180 -1.241 1.261 sum -2.551 7.939 4.309 9.386 Atomic orbital electron populations 1.21773 0.78933 1.03608 1.01242 1.47826 1.07481 1.05057 1.75797 1.22067 0.97958 0.86493 0.96030 1.21589 0.84336 0.94402 0.92082 1.22333 1.00320 0.96759 1.02800 1.21594 0.99868 0.98216 0.98153 1.86627 1.32922 1.60613 1.57523 1.21143 0.87571 0.85414 0.73806 1.90572 1.15828 1.87029 1.48789 1.17955 0.93287 0.88921 0.96306 0.92410 1.20612 0.93661 1.48573 0.94891 0.91965 1.25380 0.94948 0.94885 1.00477 1.70345 0.99896 1.44011 1.32289 0.86286 0.77511 0.78683 0.83285 1.20576 1.22294 1.19169 1.19971 0.95651 0.94822 0.91978 1.20914 0.98167 0.98063 0.97613 1.21130 0.99862 0.93780 1.01099 1.21125 1.00409 0.96499 0.98284 1.21274 0.98071 0.99447 0.97699 1.20959 0.98459 0.93149 0.97413 0.92239 0.89918 0.92087 0.87485 0.91659 0.91885 0.92262 0.89378 0.93717 0.94794 0.92742 0.76498 0.94085 0.88807 0.85381 0.84649 0.85830 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.66 9.57 127.77 1.22 3.88 16 2 N -0.63 -23.22 2.53 -846.78 -2.14 -25.36 16 3 C 0.10 2.99 4.75 86.38 0.41 3.40 16 4 C 0.12 3.66 1.18 -10.79 -0.01 3.64 16 5 C -0.16 -3.84 8.81 71.98 0.63 -3.21 16 6 C -0.12 -5.12 7.40 71.98 0.53 -4.58 16 7 O -0.57 -16.74 11.81 -148.98 -1.76 -18.50 16 8 C 0.53 24.49 3.82 87.66 0.33 24.83 16 9 O -0.55 -28.65 11.07 -3.05 -0.03 -28.68 16 10 C 0.06 2.69 1.98 -13.03 -0.03 2.66 16 11 H 0.06 2.53 7.02 -2.39 -0.02 2.51 16 12 C -0.54 -27.39 6.23 25.60 0.16 -27.23 16 13 H 0.06 3.10 7.85 -2.91 -0.02 3.07 16 14 C 0.05 2.67 4.34 84.66 0.37 3.04 16 15 N -0.83 -47.02 9.89 21.45 0.21 -46.81 16 16 Si 0.92 43.36 29.56 68.60 2.03 45.39 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 18 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 C -0.02 -1.11 4.22 -19.87 -0.08 -1.20 16 21 C -0.13 -5.80 8.44 22.27 0.19 -5.61 16 22 C -0.14 -5.52 10.05 22.27 0.22 -5.30 16 23 C -0.15 -5.42 10.05 22.27 0.22 -5.20 16 24 C -0.15 -5.99 10.05 22.27 0.22 -5.77 16 25 C -0.08 -3.84 8.09 22.27 0.18 -3.66 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 2.06 7.11 -2.39 -0.02 2.05 16 28 H 0.06 2.17 6.08 -2.39 -0.01 2.16 16 29 H 0.11 2.30 8.07 -2.38 -0.02 2.28 16 30 H 0.06 2.22 7.50 -2.39 -0.02 2.20 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 2.26 6.12 -2.39 -0.01 2.24 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 2.47 7.31 -2.39 -0.02 2.45 16 37 H 0.39 7.03 9.04 -74.06 -0.67 6.36 16 38 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 39 H 0.09 4.18 7.20 -2.91 -0.02 4.16 16 40 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 41 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.12 4.34 8.06 -2.92 -0.02 4.32 16 43 H 0.11 5.28 6.45 -2.91 -0.02 5.26 16 Total: -1.00 -67.34 338.08 3.22 -64.13 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.33 Total: 30.13 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 4.58 Total: -20.29 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.93 Total: -72.17 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.79 Total: -47.18 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -67.34 3.22 -64.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566196648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.519 kcal (2) G-P(sol) polarization free energy of solvation -67.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds