Wall clock time and date at job start Tue Mar 31 2020 07:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47484 * 2 1 4 4 H 1.09001 * 109.47258 * 304.99737 * 3 2 1 5 5 C 1.53002 * 109.47417 * 64.99746 * 3 2 1 6 6 C 1.52998 * 109.47569 * 184.99895 * 3 2 1 7 7 H 1.08999 * 109.47258 * 59.99839 * 6 3 2 8 8 N 1.46895 * 109.47763 * 179.97438 * 6 3 2 9 9 C 1.46900 * 111.00273 * 204.99992 * 8 6 3 10 10 C 1.50702 * 109.47068 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.75219 * 269.73059 * 10 9 8 12 12 C 1.37618 * 120.25044 * 179.72257 * 11 10 9 13 13 C 1.40713 * 119.74231 * 0.56853 * 12 11 10 14 14 C 1.41398 * 120.24401 * 179.68301 * 13 12 11 15 15 H 1.07999 * 119.99856 * 24.40914 * 14 13 12 16 16 C 1.39941 * 120.00084 * 204.40822 * 14 13 12 17 17 N 1.30821 * 120.00054 * 17.85702 * 16 14 13 18 18 Si 1.86800 * 120.00114 * 197.85670 * 16 14 13 19 19 H 1.48505 * 109.47245 * 90.00037 * 18 16 14 20 20 H 1.48501 * 109.47014 * 209.99728 * 18 16 14 21 21 H 1.48498 * 109.47305 * 329.99961 * 18 16 14 22 22 C 1.40714 * 119.51388 * 359.70307 * 13 12 11 23 23 C 1.37620 * 119.74573 * 0.02562 * 22 13 12 24 24 C 1.50705 * 109.46898 * 300.00238 * 6 3 2 25 25 O 1.20832 * 119.99603 * 239.99567 * 24 6 3 26 26 O 1.34231 * 120.00121 * 59.99604 * 24 6 3 27 27 H 1.09009 * 109.46787 * 60.00136 * 1 2 3 28 28 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47095 * 300.00325 * 1 2 3 30 30 H 1.09000 * 109.47465 * 239.99932 * 2 1 3 31 31 H 1.08997 * 109.47182 * 119.99970 * 2 1 3 32 32 H 1.09001 * 109.46914 * 59.99780 * 5 3 2 33 33 H 1.08996 * 109.47666 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.46892 * 300.00698 * 5 3 2 35 35 H 1.00903 * 111.00212 * 81.04018 * 8 6 3 36 36 H 1.08992 * 109.47255 * 299.99476 * 9 8 6 37 37 H 1.09001 * 109.46908 * 60.00292 * 9 8 6 38 38 H 1.08004 * 119.87108 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.13131 * 180.27734 * 12 11 10 40 40 H 0.97003 * 120.00559 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.13082 * 179.97438 * 22 13 12 42 42 H 1.07997 * 119.88169 * 179.97438 * 23 22 13 43 43 H 0.96699 * 116.99749 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4443 -0.1257 7 1 3.8533 0.9569 -1.0570 8 7 4.0546 2.8292 -0.1263 9 6 5.3499 2.9293 -0.8120 10 6 5.8189 4.3613 -0.7931 11 6 5.4704 5.2132 -1.8298 12 6 5.8883 6.5243 -1.8200 13 6 6.6823 6.9960 -0.7584 14 6 7.1232 8.3394 -0.7410 15 1 6.5712 9.0959 -1.2790 16 6 8.2748 8.6888 -0.0267 17 7 9.1304 7.7647 0.3273 18 14 8.5902 10.4746 0.4213 19 1 7.9817 10.7681 1.7437 20 1 10.0537 10.7179 0.4849 21 1 7.9859 11.3575 -0.6086 22 6 7.0348 6.1209 0.2856 23 6 6.6008 4.8152 0.2580 24 6 4.1657 0.6989 1.0382 25 8 4.9241 1.2637 1.7905 26 8 3.8584 -0.5922 1.2391 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0699 1.5875 2.1491 33 1 1.9983 3.1543 1.3072 34 1 0.5490 2.1252 1.3969 35 1 4.1138 3.1922 0.8133 36 1 6.0802 2.3007 -0.3027 37 1 5.2411 2.5966 -1.8443 38 1 4.8651 4.8475 -2.6461 39 1 5.6119 7.1875 -2.6264 40 1 9.9285 8.0067 0.8227 41 1 7.6442 6.4723 1.1052 42 1 6.8704 4.1416 1.0579 43 1 4.2687 -1.0280 1.9985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594918202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:48 Heat of formation + Delta-G solvation = -93.324662 kcal Electronic energy + Delta-G solvation = -23081.702787 eV Core-core repulsion = 19704.499965 eV Total energy + Delta-G solvation = -3377.202822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71949 -37.82144 -37.05316 -36.34535 -34.63876 -33.37765 -30.80634 -29.35547 -29.13140 -27.48572 -25.79907 -24.03162 -23.14659 -21.62637 -20.94655 -19.92111 -19.65017 -18.06546 -17.26182 -17.11471 -16.15804 -15.40504 -15.08664 -14.78552 -14.47914 -14.13510 -13.95592 -13.60759 -13.55562 -13.16206 -13.03902 -12.47464 -12.14474 -12.02144 -11.96881 -11.89327 -11.72871 -11.53808 -11.41505 -11.14048 -11.04895 -10.81369 -10.70327 -10.63200 -10.50574 -10.45573 -10.29916 -9.53491 -9.35125 -9.10693 -8.37883 -7.40860 -7.27448 -6.74055 -4.32575 2.15978 2.75264 3.00796 3.08212 3.11987 3.13191 3.19809 3.94710 4.23990 4.65790 4.72583 4.80516 4.95272 5.12814 5.16191 5.38218 5.46916 5.53910 5.63975 5.72773 5.81080 5.87097 5.91218 5.93181 5.97782 6.03815 6.28426 6.33438 6.34977 6.41876 6.44453 6.46272 6.98801 7.09903 7.15792 7.30288 7.41430 7.56066 7.66168 7.83536 7.92080 8.09168 8.18182 8.33690 8.67726 8.92555 9.01303 10.20437 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.003099 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.971821 B = 9034.010453 C = 9341.493440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.073 4.073 4 H 0.094 0.906 5 C -0.153 4.153 6 C 0.097 3.903 7 H 0.111 0.889 8 N -0.650 5.650 9 C 0.119 3.881 10 C -0.215 4.215 11 C -0.068 4.068 12 C -0.229 4.229 13 C 0.113 3.887 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.793 5.793 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.167 4.167 23 C -0.091 4.091 24 C 0.449 3.551 25 O -0.513 6.513 26 O -0.514 6.514 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.354 0.646 36 H 0.026 0.974 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.280 0.720 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.559 -14.082 1.179 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.092 4.092 4 H 0.112 0.888 5 C -0.210 4.210 6 C -0.016 4.016 7 H 0.129 0.871 8 N -0.283 5.283 9 C -0.009 4.009 10 C -0.217 4.217 11 C -0.087 4.087 12 C -0.249 4.249 13 C 0.111 3.889 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.418 5.418 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.186 4.186 23 C -0.110 4.110 24 C 0.289 3.711 25 O -0.400 6.400 26 O -0.325 6.325 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.176 0.824 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.103 0.897 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.636 -13.566 0.608 17.883 hybrid contribution 1.289 0.074 1.448 1.940 sum -10.348 -13.492 2.055 17.127 Atomic orbital electron populations 1.21803 0.95928 1.01291 1.01861 1.21790 0.95662 0.95791 1.03377 1.21126 0.91266 0.96782 1.00066 0.88822 1.21919 1.01536 1.01548 0.96006 1.21764 0.96315 0.89445 0.94092 0.87113 1.61161 1.30226 1.12544 1.24381 1.20700 0.87443 0.95617 0.97115 1.18794 1.08974 0.94072 0.99868 1.20324 0.98073 0.93711 0.96546 1.20954 1.08934 0.95097 0.99912 1.17636 0.88910 0.92996 0.89386 1.19612 1.08046 0.94293 1.27274 0.90450 1.25918 0.95119 0.99553 0.93619 1.69833 1.08156 1.35208 1.28598 0.86324 0.77915 0.82577 0.79961 1.19284 1.20366 1.18619 1.21282 1.04346 0.93012 0.99972 1.20572 0.97932 0.95902 0.96554 1.25316 0.78483 0.80147 0.87135 1.90753 1.34280 1.68456 1.46493 1.84713 1.68680 1.26811 1.52293 0.92807 0.93014 0.92623 0.91911 0.90170 0.93721 0.91274 0.92049 0.82388 0.95600 0.91793 0.89427 0.89101 0.90911 0.86569 0.89720 0.74389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.13 -1.11 4.69 -26.73 -0.13 -1.24 16 3 C -0.07 -0.76 2.41 -90.62 -0.22 -0.98 16 4 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 5 C -0.15 -1.65 8.43 37.16 0.31 -1.34 16 6 C 0.10 1.19 2.37 -68.87 -0.16 1.03 16 7 H 0.11 1.24 7.80 -51.93 -0.40 0.84 16 8 N -0.65 -10.19 5.61 -109.22 -0.61 -10.80 16 9 C 0.12 2.12 5.49 -4.97 -0.03 2.09 16 10 C -0.22 -4.73 5.42 -104.33 -0.56 -5.30 16 11 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 12 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 13 C 0.11 3.07 5.58 -106.83 -0.60 2.47 16 14 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.84 10.95 55.55 0.61 -20.23 16 18 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 23 C -0.09 -2.18 9.67 -39.66 -0.38 -2.56 16 24 C 0.45 5.76 6.13 36.01 0.22 5.98 16 25 O -0.51 -8.51 16.07 -18.75 -0.30 -8.81 16 26 O -0.51 -4.80 10.43 -39.26 -0.41 -5.21 16 27 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.72 5.68 -51.93 -0.29 0.43 16 32 H 0.04 0.50 7.22 -51.93 -0.37 0.12 16 33 H 0.07 0.85 7.21 -51.93 -0.37 0.48 16 34 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 35 H 0.35 6.11 7.00 -39.29 -0.27 5.84 16 36 H 0.03 0.48 7.56 -51.93 -0.39 0.09 16 37 H 0.06 1.05 7.99 -51.93 -0.41 0.63 16 38 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 41 H 0.12 3.20 6.16 -52.48 -0.32 2.88 16 42 H 0.08 1.94 8.06 -52.49 -0.42 1.52 16 43 H 0.40 2.31 9.10 45.56 0.41 2.73 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -29.39 347.95 -8.85 -38.24 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -5.63 Total: 12.04 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -2.72 Total: -24.35 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.00 Total: -31.03 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.71 Total: -14.02 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.39 -8.85 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594918202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.086 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds