Wall clock time and date at job start Tue Mar 31 2020 07:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47484 * 2 1 4 4 H 1.09001 * 109.47258 * 304.99737 * 3 2 1 5 5 C 1.53002 * 109.47417 * 64.99746 * 3 2 1 6 6 C 1.52998 * 109.47569 * 184.99895 * 3 2 1 7 7 H 1.08999 * 109.47258 * 59.99839 * 6 3 2 8 8 N 1.46895 * 109.47763 * 179.97438 * 6 3 2 9 9 C 1.46900 * 111.00273 * 204.99992 * 8 6 3 10 10 C 1.50702 * 109.47068 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.75219 * 269.73059 * 10 9 8 12 12 C 1.37618 * 120.25044 * 179.72257 * 11 10 9 13 13 C 1.40713 * 119.74231 * 0.56853 * 12 11 10 14 14 C 1.41398 * 120.24401 * 179.68301 * 13 12 11 15 15 H 1.07999 * 119.99856 * 24.40914 * 14 13 12 16 16 C 1.39941 * 120.00084 * 204.40822 * 14 13 12 17 17 N 1.30821 * 120.00054 * 17.85702 * 16 14 13 18 18 Si 1.86800 * 120.00114 * 197.85670 * 16 14 13 19 19 H 1.48505 * 109.47245 * 90.00037 * 18 16 14 20 20 H 1.48501 * 109.47014 * 209.99728 * 18 16 14 21 21 H 1.48498 * 109.47305 * 329.99961 * 18 16 14 22 22 C 1.40714 * 119.51388 * 359.70307 * 13 12 11 23 23 C 1.37620 * 119.74573 * 0.02562 * 22 13 12 24 24 C 1.50705 * 109.46898 * 300.00238 * 6 3 2 25 25 O 1.20832 * 119.99603 * 239.99567 * 24 6 3 26 26 O 1.34231 * 120.00121 * 59.99604 * 24 6 3 27 27 H 1.09009 * 109.46787 * 60.00136 * 1 2 3 28 28 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47095 * 300.00325 * 1 2 3 30 30 H 1.09000 * 109.47465 * 239.99932 * 2 1 3 31 31 H 1.08997 * 109.47182 * 119.99970 * 2 1 3 32 32 H 1.09001 * 109.46914 * 59.99780 * 5 3 2 33 33 H 1.08996 * 109.47666 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.46892 * 300.00698 * 5 3 2 35 35 H 1.00903 * 111.00212 * 81.04018 * 8 6 3 36 36 H 1.08992 * 109.47255 * 299.99476 * 9 8 6 37 37 H 1.09001 * 109.46908 * 60.00292 * 9 8 6 38 38 H 1.08004 * 119.87108 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.13131 * 180.27734 * 12 11 10 40 40 H 0.97003 * 120.00559 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.13082 * 179.97438 * 22 13 12 42 42 H 1.07997 * 119.88169 * 179.97438 * 23 22 13 43 43 H 0.96699 * 116.99749 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4443 -0.1257 7 1 3.8533 0.9569 -1.0570 8 7 4.0546 2.8292 -0.1263 9 6 5.3499 2.9293 -0.8120 10 6 5.8189 4.3613 -0.7931 11 6 5.4704 5.2132 -1.8298 12 6 5.8883 6.5243 -1.8200 13 6 6.6823 6.9960 -0.7584 14 6 7.1232 8.3394 -0.7410 15 1 6.5712 9.0959 -1.2790 16 6 8.2748 8.6888 -0.0267 17 7 9.1304 7.7647 0.3273 18 14 8.5902 10.4746 0.4213 19 1 7.9817 10.7681 1.7437 20 1 10.0537 10.7179 0.4849 21 1 7.9859 11.3575 -0.6086 22 6 7.0348 6.1209 0.2856 23 6 6.6008 4.8152 0.2580 24 6 4.1657 0.6989 1.0382 25 8 4.9241 1.2637 1.7905 26 8 3.8584 -0.5922 1.2391 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0699 1.5875 2.1491 33 1 1.9983 3.1543 1.3072 34 1 0.5490 2.1252 1.3969 35 1 4.1138 3.1922 0.8133 36 1 6.0802 2.3007 -0.3027 37 1 5.2411 2.5966 -1.8443 38 1 4.8651 4.8475 -2.6461 39 1 5.6119 7.1875 -2.6264 40 1 9.9285 8.0067 0.8227 41 1 7.6442 6.4723 1.1052 42 1 6.8704 4.1416 1.0579 43 1 4.2687 -1.0280 1.9985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594918202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:47 Heat of formation + Delta-G solvation = -110.696764 kcal Electronic energy + Delta-G solvation = -23082.456098 eV Core-core repulsion = 19704.499965 eV Total energy + Delta-G solvation = -3377.956133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73184 -39.55707 -38.12496 -37.32139 -36.09730 -34.95064 -32.26505 -31.15571 -30.43559 -28.69840 -27.30303 -25.00901 -24.62215 -22.88679 -22.51484 -21.67960 -20.55624 -19.21086 -19.03611 -18.22096 -17.15675 -17.14657 -16.32597 -15.90375 -15.76155 -15.56871 -15.38055 -15.13776 -14.71402 -14.30683 -14.06839 -13.96943 -13.80018 -13.59088 -13.16482 -12.96052 -12.81126 -12.77457 -12.72270 -12.57513 -12.46364 -12.37663 -12.15090 -11.72055 -11.59409 -11.45781 -11.32475 -11.26103 -11.21594 -11.01032 -9.67409 -9.33328 -9.18873 -8.63904 -6.33171 0.93388 1.15864 1.17225 1.37033 1.50638 1.50966 2.12190 2.20266 2.67563 3.17413 3.78579 3.80291 3.94627 4.13028 4.23891 4.28719 4.36109 4.39558 4.56915 4.64922 4.65249 4.71454 4.77905 4.82233 4.90224 5.06118 5.11564 5.16629 5.17973 5.28279 5.33185 5.38222 5.47960 5.56253 5.57454 5.66587 5.72003 5.86636 6.02786 6.11257 6.16248 6.31787 6.40152 6.71487 6.94811 6.96000 7.05139 8.33170 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.003099 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.971821 B = 9034.010453 C = 9341.493440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.066 4.066 4 H 0.097 0.903 5 C -0.151 4.151 6 C 0.094 3.906 7 H 0.130 0.870 8 N -0.652 5.652 9 C 0.127 3.873 10 C -0.202 4.202 11 C -0.067 4.067 12 C -0.242 4.242 13 C 0.080 3.920 14 C -0.501 4.501 15 H 0.076 0.924 16 C 0.033 3.967 17 N -0.828 5.828 18 Si 0.983 3.017 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.256 1.256 22 C -0.191 4.191 23 C -0.098 4.098 24 C 0.457 3.543 25 O -0.556 6.556 26 O -0.499 6.499 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.344 0.656 36 H 0.018 0.982 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.287 0.713 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.067 -15.518 0.409 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.085 4.085 4 H 0.115 0.885 5 C -0.208 4.208 6 C -0.018 4.018 7 H 0.148 0.852 8 N -0.283 5.283 9 C -0.001 4.001 10 C -0.203 4.203 11 C -0.085 4.085 12 C -0.262 4.262 13 C 0.078 3.922 14 C -0.530 4.530 15 H 0.094 0.906 16 C -0.181 4.181 17 N -0.454 5.454 18 Si 0.804 3.196 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.180 1.180 22 C -0.211 4.211 23 C -0.117 4.117 24 C 0.299 3.701 25 O -0.447 6.447 26 O -0.311 6.311 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.164 0.836 36 H 0.036 0.964 37 H 0.107 0.893 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -13.169 -15.053 -0.173 20.001 hybrid contribution 1.658 0.287 1.680 2.378 sum -11.511 -14.766 1.507 18.783 Atomic orbital electron populations 1.21795 0.95041 1.01988 1.01968 1.21743 0.96369 0.94298 1.03639 1.21116 0.89630 0.98073 0.99723 0.88479 1.21899 1.02486 1.00256 0.96187 1.21912 0.97412 0.87683 0.94799 0.85228 1.61069 1.28500 1.15158 1.23599 1.20602 0.88352 0.92412 0.98758 1.19227 1.06712 0.96190 0.98219 1.20661 0.97661 0.92760 0.97424 1.21192 1.08881 0.96490 0.99637 1.17974 0.90221 0.93644 0.90352 1.19854 1.09307 0.94573 1.29306 0.90589 1.26795 0.94283 1.04215 0.92858 1.69894 1.08749 1.37475 1.29250 0.85193 0.78185 0.76634 0.79615 1.18834 1.19232 1.17989 1.21216 1.05610 0.94329 0.99944 1.20730 0.98288 0.95105 0.97582 1.25254 0.77431 0.80858 0.86537 1.90755 1.36343 1.69555 1.48066 1.84649 1.68206 1.25111 1.53128 0.92505 0.92069 0.92746 0.91069 0.90437 0.94397 0.93288 0.90478 0.83618 0.96374 0.89327 0.86043 0.88342 0.90253 0.88643 0.89248 0.72218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 71.98 0.70 -1.16 16 2 C -0.12 -1.74 4.69 30.59 0.14 -1.60 16 3 C -0.07 -1.20 2.41 -10.80 -0.03 -1.23 16 4 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.15 -3.04 8.43 71.98 0.61 -2.43 16 6 C 0.09 2.10 2.37 44.17 0.10 2.20 16 7 H 0.13 2.44 7.80 -2.39 -0.02 2.42 16 8 N -0.65 -19.39 5.61 -499.48 -2.80 -22.19 16 9 C 0.13 4.28 5.49 85.56 0.47 4.75 16 10 C -0.20 -8.72 5.42 -19.67 -0.11 -8.83 16 11 C -0.07 -2.92 9.67 22.22 0.21 -2.70 16 12 C -0.24 -12.16 9.80 22.73 0.22 -11.94 16 13 C 0.08 4.51 5.58 -21.29 -0.12 4.39 16 14 C -0.50 -27.95 9.05 23.46 0.21 -27.74 16 15 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 16 C 0.03 1.72 5.14 85.26 0.44 2.16 16 17 N -0.83 -45.08 10.95 21.83 0.24 -44.84 16 18 Si 0.98 39.47 29.60 68.60 2.03 41.50 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.19 -10.62 8.70 22.73 0.20 -10.42 16 23 C -0.10 -4.83 9.67 22.22 0.21 -4.61 16 24 C 0.46 10.89 6.13 71.24 0.44 11.33 16 25 O -0.56 -18.14 16.07 21.94 0.35 -17.78 16 26 O -0.50 -7.98 10.43 -51.43 -0.54 -8.51 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.68 6.56 -2.39 -0.02 0.67 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.15 5.68 -2.39 -0.01 1.14 16 32 H 0.04 0.80 7.22 -2.39 -0.02 0.78 16 33 H 0.05 1.18 7.21 -2.39 -0.02 1.17 16 34 H 0.08 1.28 6.56 -2.39 -0.02 1.27 16 35 H 0.34 11.72 7.00 -89.69 -0.63 11.09 16 36 H 0.02 0.64 7.56 -2.39 -0.02 0.63 16 37 H 0.09 2.58 7.99 -2.39 -0.02 2.56 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 41 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 42 H 0.09 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.42 3.75 9.10 -74.06 -0.67 3.08 16 Total: -1.00 -65.69 347.95 2.72 -62.97 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.27 Total: 36.69 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 3.71 Total: -47.83 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -2.56 Total: -67.03 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.18 Total: -26.29 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -65.69 2.72 -62.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594918202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.730 kcal (2) G-P(sol) polarization free energy of solvation -65.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds