Wall clock time and date at job start Tue Mar 31 2020 07:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47607 * 2 1 4 4 H 1.09002 * 109.46680 * 54.66095 * 3 2 1 5 5 C 1.53000 * 109.46995 * 294.66167 * 3 2 1 6 6 C 1.52999 * 109.47122 * 174.66034 * 3 2 1 7 7 H 1.08995 * 109.47151 * 298.83548 * 6 3 2 8 8 N 1.46902 * 109.47052 * 58.84097 * 6 3 2 9 9 C 1.46899 * 110.99840 * 204.99719 * 8 6 3 10 10 C 1.50701 * 109.47338 * 179.97438 * 9 8 6 11 11 C 1.38629 * 119.74963 * 89.99951 * 10 9 8 12 12 C 1.37619 * 120.25100 * 180.28027 * 11 10 9 13 13 C 1.40713 * 119.74131 * 359.51964 * 12 11 10 14 14 C 1.41401 * 120.24505 * 180.23437 * 13 12 11 15 15 H 1.07996 * 120.00194 * 154.83574 * 14 13 12 16 16 C 1.39944 * 119.99645 * 334.82938 * 14 13 12 17 17 N 1.30825 * 120.00122 * 343.40632 * 16 14 13 18 18 Si 1.86799 * 119.99897 * 163.40158 * 16 14 13 19 19 H 1.48501 * 109.47017 * 94.97295 * 18 16 14 20 20 H 1.48498 * 109.47484 * 214.97187 * 18 16 14 21 21 H 1.48502 * 109.47361 * 334.97535 * 18 16 14 22 22 C 1.40718 * 119.51397 * 0.47360 * 13 12 11 23 23 C 1.37615 * 119.74145 * 359.76065 * 22 13 12 24 24 C 1.50696 * 109.46842 * 178.83595 * 6 3 2 25 25 O 1.20824 * 120.00484 * 263.54866 * 24 6 3 26 26 O 1.34228 * 120.00216 * 83.55069 * 24 6 3 27 27 H 1.08993 * 109.47095 * 300.00441 * 1 2 3 28 28 H 1.09000 * 109.46858 * 60.00056 * 1 2 3 29 29 H 1.08996 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47462 * 239.99552 * 2 1 3 31 31 H 1.09003 * 109.46647 * 120.00430 * 2 1 3 32 32 H 1.08999 * 109.47265 * 300.00279 * 5 3 2 33 33 H 1.08998 * 109.47222 * 59.99759 * 5 3 2 34 34 H 1.08996 * 109.46928 * 179.97438 * 5 3 2 35 35 H 1.00899 * 111.00149 * 81.04040 * 8 6 3 36 36 H 1.09008 * 109.47400 * 59.99901 * 9 8 6 37 37 H 1.08995 * 109.47549 * 299.99750 * 9 8 6 38 38 H 1.08000 * 119.87592 * 359.97438 * 11 10 9 39 39 H 1.07996 * 120.12695 * 179.72146 * 12 11 10 40 40 H 0.96998 * 120.00115 * 179.97438 * 17 16 14 41 41 H 1.07995 * 120.12812 * 179.73132 * 22 13 12 42 42 H 1.08004 * 119.87374 * 179.97438 * 23 22 13 43 43 H 0.96697 * 117.00329 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6008 1.9831 0.8383 5 6 1.6427 2.1239 -1.3109 6 6 3.5642 1.4444 0.1342 7 1 3.8464 0.9774 1.0778 8 7 4.1549 0.6920 -0.9806 9 6 5.4761 0.1627 -0.6170 10 6 6.0492 -0.6018 -1.7824 11 6 6.8267 0.0573 -2.7220 12 6 7.3504 -0.6296 -3.7934 13 6 7.1023 -2.0082 -3.9275 14 6 7.6392 -2.7254 -5.0214 15 1 7.8108 -3.7884 -4.9383 16 6 7.9482 -2.0577 -6.2119 17 7 7.4559 -0.8675 -6.4411 18 14 9.0638 -2.8658 -7.4735 19 1 8.2368 -3.5608 -8.4925 20 1 9.8960 -1.8289 -8.1349 21 1 9.9455 -3.8504 -6.7963 22 6 6.3117 -2.6668 -2.9676 23 6 5.7943 -1.9588 -1.9071 24 6 4.0691 2.8640 0.1055 25 8 4.4730 3.3408 -0.9286 26 8 4.0702 3.5988 1.2288 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 2.0819 1.5832 -2.1492 33 1 0.5569 2.1225 -1.4066 34 1 2.0057 3.1517 -1.3107 35 1 4.2096 1.2609 -1.8121 36 1 5.3775 -0.5029 0.2406 37 1 6.1405 0.9882 -0.3617 38 1 7.0182 1.1148 -2.6155 39 1 7.9522 -0.1132 -4.5266 40 1 7.6704 -0.4045 -7.2660 41 1 6.1114 -3.7237 -3.0632 42 1 5.1869 -2.4621 -1.1694 43 1 4.4038 4.5039 1.1610 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594918204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:54 Heat of formation + Delta-G solvation = -95.722391 kcal Electronic energy + Delta-G solvation = -23200.320543 eV Core-core repulsion = 19823.013748 eV Total energy + Delta-G solvation = -3377.306795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.63571 -37.91093 -37.17863 -36.08861 -34.60033 -33.32654 -30.81204 -29.42378 -29.16683 -27.37666 -25.67099 -24.40746 -23.12423 -21.24938 -20.97205 -19.89895 -19.54807 -18.14735 -17.27252 -17.00699 -16.09056 -15.45644 -15.27426 -14.81568 -14.24429 -14.06275 -13.96861 -13.73749 -13.39598 -13.26589 -12.81523 -12.45331 -12.14569 -12.02033 -11.91602 -11.86704 -11.59372 -11.53201 -11.35589 -11.10676 -11.05968 -10.93592 -10.80356 -10.52724 -10.44413 -10.37048 -10.30428 -9.55778 -9.37335 -9.13577 -8.36269 -7.42932 -7.27754 -6.73719 -4.34025 2.15098 2.74103 3.00381 3.07723 3.10987 3.11870 3.18816 3.94222 4.30686 4.70289 4.73600 4.84444 4.99278 5.18099 5.29456 5.49156 5.52789 5.59344 5.68596 5.72462 5.79234 5.84175 5.91013 6.01430 6.10636 6.18684 6.24461 6.38159 6.40641 6.42787 6.43978 6.56747 6.96903 7.09157 7.14903 7.28819 7.39727 7.58562 7.64851 7.83142 7.90078 8.07608 8.15486 8.32388 8.66291 8.91453 8.99669 10.20491 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.003502 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.839273 B = 7993.654760 C = 8445.561925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.069 4.069 4 H 0.074 0.926 5 C -0.155 4.155 6 C 0.098 3.902 7 H 0.107 0.893 8 N -0.649 5.649 9 C 0.119 3.881 10 C -0.216 4.216 11 C -0.092 4.092 12 C -0.165 4.165 13 C 0.114 3.886 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.793 5.793 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.229 4.229 23 C -0.067 4.067 24 C 0.448 3.552 25 O -0.510 6.510 26 O -0.521 6.521 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.358 0.642 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.280 0.720 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 5.846 11.752 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.089 4.089 4 H 0.092 0.908 5 C -0.212 4.212 6 C -0.015 4.015 7 H 0.125 0.875 8 N -0.283 5.283 9 C -0.008 4.008 10 C -0.217 4.217 11 C -0.111 4.111 12 C -0.184 4.184 13 C 0.111 3.889 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.248 4.248 23 C -0.086 4.086 24 C 0.288 3.712 25 O -0.397 6.397 26 O -0.331 6.331 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.181 0.819 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.101 0.899 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.332 5.185 11.448 15.653 hybrid contribution 1.286 1.307 -0.788 1.996 sum -8.046 6.491 10.660 14.850 Atomic orbital electron populations 1.21844 0.96378 1.01464 1.01406 1.21422 0.94705 0.94871 1.03580 1.21089 0.90783 0.98232 0.98757 0.90787 1.21950 1.01463 0.99938 0.97885 1.21705 0.96738 0.84367 0.98725 0.87467 1.61138 1.25296 1.37252 1.04592 1.20712 0.86880 0.96221 0.97032 1.18789 1.09007 0.94052 0.99875 1.20554 0.98445 0.97053 0.95073 1.21279 1.03953 0.95420 0.97783 1.17633 0.88076 0.92089 0.91094 1.19607 1.37050 0.96153 0.96439 0.90489 1.25909 0.94444 0.94598 0.99257 1.69828 1.34443 1.12892 1.24637 0.86328 0.80565 0.79879 0.80121 1.19588 1.20077 1.18453 1.20974 1.05711 0.98612 0.99522 1.20316 0.98089 0.93298 0.96877 1.25342 0.74510 0.90568 0.80778 1.90732 1.43872 1.72433 1.32704 1.84612 1.78784 1.30400 1.39346 0.93315 0.92616 0.92810 0.89721 0.92203 0.91036 0.92198 0.93475 0.81933 0.91570 0.96246 0.89889 0.86535 0.90920 0.89085 0.89380 0.73975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 37.16 0.36 -1.06 16 2 C -0.11 -1.16 5.14 -26.73 -0.14 -1.30 16 3 C -0.07 -0.76 2.27 -90.62 -0.21 -0.96 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 5 C -0.16 -1.82 8.39 37.16 0.31 -1.51 16 6 C 0.10 1.23 2.27 -68.87 -0.16 1.07 16 7 H 0.11 1.22 7.80 -51.93 -0.41 0.82 16 8 N -0.65 -10.14 5.04 -109.22 -0.55 -10.69 16 9 C 0.12 2.06 5.59 -4.98 -0.03 2.03 16 10 C -0.22 -4.63 5.42 -104.33 -0.56 -5.20 16 11 C -0.09 -2.18 9.67 -39.66 -0.38 -2.57 16 12 C -0.16 -4.34 8.69 -38.87 -0.34 -4.67 16 13 C 0.11 3.05 5.57 -106.82 -0.60 2.45 16 14 C -0.46 -12.37 9.06 -37.74 -0.34 -12.72 16 15 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 16 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 17 N -0.79 -20.76 10.93 55.55 0.61 -20.15 16 18 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 23 C -0.07 -1.48 9.67 -39.66 -0.38 -1.87 16 24 C 0.45 5.97 6.22 36.00 0.22 6.20 16 25 O -0.51 -8.48 16.04 -18.75 -0.30 -8.78 16 26 O -0.52 -5.40 13.42 -39.25 -0.53 -5.92 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.51 6.58 -51.93 -0.34 0.17 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 1.10 7.75 -51.93 -0.40 0.69 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.97 7.23 -51.93 -0.38 0.59 16 33 H 0.06 0.61 6.58 -51.93 -0.34 0.27 16 34 H 0.05 0.59 6.85 -51.93 -0.36 0.23 16 35 H 0.36 6.35 6.84 -39.29 -0.27 6.08 16 36 H 0.07 1.04 7.99 -51.92 -0.42 0.62 16 37 H 0.02 0.34 7.94 -51.93 -0.41 -0.07 16 38 H 0.08 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 40 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 41 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.40 2.61 9.10 45.56 0.41 3.02 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -28.96 352.69 -8.93 -37.89 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.73 Total: 12.86 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -2.71 Total: -24.27 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.06 Total: -30.85 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.83 Total: -14.71 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.96 -8.93 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594918204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.832 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds