Wall clock time and date at job start Tue Mar 31 2020 07:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47607 * 2 1 4 4 H 1.09002 * 109.46680 * 54.66095 * 3 2 1 5 5 C 1.53000 * 109.46995 * 294.66167 * 3 2 1 6 6 C 1.52999 * 109.47122 * 174.66034 * 3 2 1 7 7 H 1.08995 * 109.47151 * 298.83548 * 6 3 2 8 8 N 1.46902 * 109.47052 * 58.84097 * 6 3 2 9 9 C 1.46899 * 110.99840 * 204.99719 * 8 6 3 10 10 C 1.50701 * 109.47338 * 179.97438 * 9 8 6 11 11 C 1.38629 * 119.74963 * 89.99951 * 10 9 8 12 12 C 1.37619 * 120.25100 * 180.28027 * 11 10 9 13 13 C 1.40713 * 119.74131 * 359.51964 * 12 11 10 14 14 C 1.41401 * 120.24505 * 180.23437 * 13 12 11 15 15 H 1.07996 * 120.00194 * 154.83574 * 14 13 12 16 16 C 1.39944 * 119.99645 * 334.82938 * 14 13 12 17 17 N 1.30825 * 120.00122 * 343.40632 * 16 14 13 18 18 Si 1.86799 * 119.99897 * 163.40158 * 16 14 13 19 19 H 1.48501 * 109.47017 * 94.97295 * 18 16 14 20 20 H 1.48498 * 109.47484 * 214.97187 * 18 16 14 21 21 H 1.48502 * 109.47361 * 334.97535 * 18 16 14 22 22 C 1.40718 * 119.51397 * 0.47360 * 13 12 11 23 23 C 1.37615 * 119.74145 * 359.76065 * 22 13 12 24 24 C 1.50696 * 109.46842 * 178.83595 * 6 3 2 25 25 O 1.20824 * 120.00484 * 263.54866 * 24 6 3 26 26 O 1.34228 * 120.00216 * 83.55069 * 24 6 3 27 27 H 1.08993 * 109.47095 * 300.00441 * 1 2 3 28 28 H 1.09000 * 109.46858 * 60.00056 * 1 2 3 29 29 H 1.08996 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47462 * 239.99552 * 2 1 3 31 31 H 1.09003 * 109.46647 * 120.00430 * 2 1 3 32 32 H 1.08999 * 109.47265 * 300.00279 * 5 3 2 33 33 H 1.08998 * 109.47222 * 59.99759 * 5 3 2 34 34 H 1.08996 * 109.46928 * 179.97438 * 5 3 2 35 35 H 1.00899 * 111.00149 * 81.04040 * 8 6 3 36 36 H 1.09008 * 109.47400 * 59.99901 * 9 8 6 37 37 H 1.08995 * 109.47549 * 299.99750 * 9 8 6 38 38 H 1.08000 * 119.87592 * 359.97438 * 11 10 9 39 39 H 1.07996 * 120.12695 * 179.72146 * 12 11 10 40 40 H 0.96998 * 120.00115 * 179.97438 * 17 16 14 41 41 H 1.07995 * 120.12812 * 179.73132 * 22 13 12 42 42 H 1.08004 * 119.87374 * 179.97438 * 23 22 13 43 43 H 0.96697 * 117.00329 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6008 1.9831 0.8383 5 6 1.6427 2.1239 -1.3109 6 6 3.5642 1.4444 0.1342 7 1 3.8464 0.9774 1.0778 8 7 4.1549 0.6920 -0.9806 9 6 5.4761 0.1627 -0.6170 10 6 6.0492 -0.6018 -1.7824 11 6 6.8267 0.0573 -2.7220 12 6 7.3504 -0.6296 -3.7934 13 6 7.1023 -2.0082 -3.9275 14 6 7.6392 -2.7254 -5.0214 15 1 7.8108 -3.7884 -4.9383 16 6 7.9482 -2.0577 -6.2119 17 7 7.4559 -0.8675 -6.4411 18 14 9.0638 -2.8658 -7.4735 19 1 8.2368 -3.5608 -8.4925 20 1 9.8960 -1.8289 -8.1349 21 1 9.9455 -3.8504 -6.7963 22 6 6.3117 -2.6668 -2.9676 23 6 5.7943 -1.9588 -1.9071 24 6 4.0691 2.8640 0.1055 25 8 4.4730 3.3408 -0.9286 26 8 4.0702 3.5988 1.2288 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 2.0819 1.5832 -2.1492 33 1 0.5569 2.1225 -1.4066 34 1 2.0057 3.1517 -1.3107 35 1 4.2096 1.2609 -1.8121 36 1 5.3775 -0.5029 0.2406 37 1 6.1405 0.9882 -0.3617 38 1 7.0182 1.1148 -2.6155 39 1 7.9522 -0.1132 -4.5266 40 1 7.6704 -0.4045 -7.2660 41 1 6.1114 -3.7237 -3.0632 42 1 5.1869 -2.4621 -1.1694 43 1 4.4038 4.5039 1.1610 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594918204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:53 Heat of formation + Delta-G solvation = -112.505751 kcal Electronic energy + Delta-G solvation = -23201.048324 eV Core-core repulsion = 19823.013748 eV Total energy + Delta-G solvation = -3378.034576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68145 -39.57013 -38.34272 -37.08680 -36.10870 -34.89303 -32.24976 -31.16188 -30.58733 -28.65916 -27.19234 -25.28162 -24.73272 -22.87730 -22.17709 -21.67149 -20.49070 -19.21083 -19.15553 -18.11710 -17.21312 -17.07452 -16.44644 -16.09683 -15.76327 -15.60611 -15.23099 -14.98036 -14.68137 -14.47231 -14.17603 -13.80583 -13.76563 -13.49626 -13.28226 -12.96197 -12.84629 -12.83525 -12.66147 -12.52425 -12.44490 -12.26707 -12.05798 -11.99960 -11.63758 -11.42505 -11.32693 -11.26759 -11.24564 -11.01144 -9.63782 -9.32987 -9.17057 -8.62252 -6.33256 0.93862 1.12378 1.17593 1.37311 1.48064 1.53599 2.09190 2.20698 2.68543 3.21750 3.79821 3.80665 3.93492 4.06625 4.24527 4.27663 4.34919 4.45784 4.56635 4.64615 4.68841 4.70697 4.77936 4.78805 4.84205 5.05514 5.06473 5.16947 5.19188 5.29373 5.34675 5.38684 5.48265 5.54207 5.57464 5.70206 5.72351 5.88116 6.03698 6.11826 6.16873 6.31948 6.41027 6.72027 6.92960 6.95495 7.05513 8.34458 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.003502 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.839273 B = 7993.654760 C = 8445.561925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C -0.063 4.063 4 H 0.097 0.903 5 C -0.152 4.152 6 C 0.096 3.904 7 H 0.130 0.870 8 N -0.651 5.651 9 C 0.126 3.874 10 C -0.200 4.200 11 C -0.100 4.100 12 C -0.190 4.190 13 C 0.081 3.919 14 C -0.502 4.502 15 H 0.076 0.924 16 C 0.033 3.967 17 N -0.829 5.829 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.258 1.258 22 C -0.242 4.242 23 C -0.066 4.066 24 C 0.454 3.546 25 O -0.550 6.550 26 O -0.510 6.510 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.344 0.656 36 H 0.093 0.907 37 H 0.018 0.982 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.085 5.835 13.861 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.082 4.082 4 H 0.116 0.884 5 C -0.209 4.209 6 C -0.016 4.016 7 H 0.147 0.853 8 N -0.283 5.283 9 C -0.002 4.002 10 C -0.202 4.202 11 C -0.119 4.119 12 C -0.210 4.210 13 C 0.078 3.922 14 C -0.532 4.532 15 H 0.094 0.906 16 C -0.181 4.181 17 N -0.455 5.455 18 Si 0.803 3.197 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.181 1.181 22 C -0.262 4.262 23 C -0.084 4.084 24 C 0.296 3.704 25 O -0.440 6.440 26 O -0.321 6.321 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.165 0.835 36 H 0.111 0.889 37 H 0.036 0.964 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -10.467 5.187 13.604 17.932 hybrid contribution 1.523 1.423 -1.249 2.431 sum -8.944 6.610 12.355 16.623 Atomic orbital electron populations 1.21822 0.95168 1.01871 1.01995 1.21370 0.95760 0.94341 1.02779 1.21108 0.89547 0.98639 0.98886 0.88448 1.21909 1.02306 0.99009 0.97695 1.21848 0.97518 0.83977 0.98257 0.85257 1.61044 1.23997 1.38065 1.05207 1.20652 0.87577 0.96243 0.95724 1.19228 1.06758 0.94245 0.99927 1.20735 0.98694 0.97457 0.95016 1.21214 1.05297 0.95746 0.98695 1.17966 0.89336 0.92615 0.92252 1.19864 1.39308 0.96408 0.97626 0.90603 1.26775 0.95283 0.95071 1.00952 1.69896 1.35643 1.14366 1.25616 0.85200 0.78383 0.78889 0.77272 1.18658 1.19212 1.18127 1.21212 1.05700 0.99240 1.00019 1.20658 0.97560 0.93526 0.96670 1.25342 0.73549 0.90914 0.80639 1.90735 1.45765 1.73289 1.34241 1.84548 1.78286 1.31682 1.37631 0.91784 0.92943 0.92578 0.92283 0.91186 0.93435 0.90615 0.94464 0.83500 0.88880 0.96387 0.89205 0.88674 0.90330 0.88405 0.85994 0.71775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.67 71.98 0.70 -1.68 16 2 C -0.10 -1.98 5.14 30.59 0.16 -1.82 16 3 C -0.06 -1.20 2.27 -10.79 -0.02 -1.23 16 4 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 5 C -0.15 -3.38 8.39 71.98 0.60 -2.78 16 6 C 0.10 2.17 2.27 44.17 0.10 2.27 16 7 H 0.13 2.39 7.80 -2.39 -0.02 2.37 16 8 N -0.65 -19.30 5.04 -499.47 -2.52 -21.81 16 9 C 0.13 4.07 5.59 85.56 0.48 4.54 16 10 C -0.20 -8.42 5.42 -19.68 -0.11 -8.53 16 11 C -0.10 -4.83 9.67 22.22 0.21 -4.62 16 12 C -0.19 -10.43 8.69 22.73 0.20 -10.24 16 13 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 14 C -0.50 -27.94 9.06 23.46 0.21 -27.73 16 15 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 16 C 0.03 1.74 5.16 85.26 0.44 2.18 16 17 N -0.83 -45.20 10.93 21.83 0.24 -44.96 16 18 Si 0.98 39.35 29.59 68.60 2.03 41.38 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C -0.24 -12.03 9.80 22.73 0.22 -11.81 16 23 C -0.07 -2.82 9.67 22.22 0.21 -2.61 16 24 C 0.45 11.13 6.22 71.23 0.44 11.58 16 25 O -0.55 -17.88 16.04 21.97 0.35 -17.53 16 26 O -0.51 -8.97 13.42 -51.40 -0.69 -9.66 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.85 6.58 -2.39 -0.02 0.83 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.43 7.75 -2.39 -0.02 1.42 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.28 7.23 -2.39 -0.02 1.27 16 33 H 0.07 1.41 6.58 -2.39 -0.02 1.39 16 34 H 0.04 0.89 6.85 -2.39 -0.02 0.87 16 35 H 0.34 12.12 6.84 -89.69 -0.61 11.51 16 36 H 0.09 2.55 7.99 -2.38 -0.02 2.53 16 37 H 0.02 0.59 7.94 -2.39 -0.02 0.57 16 38 H 0.09 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.10 5.53 6.16 -2.91 -0.02 5.52 16 40 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 41 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 43 H 0.42 4.26 9.10 -74.06 -0.67 3.58 16 Total: -1.00 -65.24 352.69 2.88 -62.35 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -0.26 Total: 38.31 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 3.73 Total: -48.09 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -2.28 Total: -66.77 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.34 Total: -27.19 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -65.24 2.88 -62.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594918204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.153 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds