Wall clock time and date at job start Tue Mar 31 2020 07:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47210 * 2 1 4 4 H 1.08999 * 109.47071 * 304.99690 * 3 2 1 5 5 C 1.52999 * 109.47471 * 64.99899 * 3 2 1 6 6 C 1.52997 * 109.47201 * 185.00010 * 3 2 1 7 7 H 1.09005 * 109.47456 * 59.99169 * 6 3 2 8 8 N 1.46500 * 109.47419 * 179.97438 * 6 3 2 9 9 C 1.39676 * 120.00062 * 204.99556 * 8 6 3 10 10 C 1.38906 * 120.07171 * 179.97438 * 9 8 6 11 11 C 1.38111 * 119.92343 * 179.97438 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00253 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47148 * 90.00263 * 18 16 14 20 20 H 1.48500 * 109.46768 * 209.99956 * 18 16 14 21 21 H 1.48496 * 109.47300 * 329.99708 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 C 1.50701 * 109.46998 * 300.00147 * 6 3 2 25 25 O 1.20837 * 119.99659 * 240.00235 * 24 6 3 26 26 O 1.34223 * 120.00313 * 59.99537 * 24 6 3 27 27 H 1.08995 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47191 * 300.00462 * 1 2 3 29 29 H 1.09000 * 109.47191 * 59.99825 * 1 2 3 30 30 H 1.09001 * 109.47191 * 239.99538 * 2 1 3 31 31 H 1.09000 * 109.46740 * 119.99887 * 2 1 3 32 32 H 1.08995 * 109.46888 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46791 * 299.99702 * 5 3 2 34 34 H 1.08999 * 109.47144 * 59.99836 * 5 3 2 35 35 H 0.96994 * 119.99675 * 24.99984 * 8 6 3 36 36 H 1.08000 * 120.03932 * 359.96119 * 10 9 8 37 37 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 39 39 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 40 40 H 0.96990 * 120.00273 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 42 42 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 43 43 H 0.96701 * 116.99912 * 180.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 1 3.8532 0.9569 -1.0571 8 7 4.0532 2.8255 -0.1263 9 6 5.2737 3.1345 -0.7312 10 6 5.7378 4.4437 -0.7331 11 6 6.9453 4.7457 -1.3316 12 6 7.6892 3.7474 -1.9336 13 6 9.0031 4.0818 -2.5916 14 6 10.1161 3.9561 -1.5835 15 1 9.8943 3.6630 -0.5680 16 6 11.4177 4.2144 -1.9578 17 7 11.6880 4.5699 -3.1948 18 14 12.7975 4.0579 -0.7083 19 1 13.3289 2.6715 -0.7287 20 1 13.8848 5.0099 -1.0499 21 1 12.2756 4.3682 0.6469 22 6 7.2327 2.4420 -1.9285 23 6 6.0261 2.1331 -1.3318 24 6 4.1657 0.6990 1.0381 25 8 4.9240 1.2638 1.7905 26 8 3.8584 -0.5920 1.2391 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.9983 3.1544 1.3070 33 1 0.5490 2.1254 1.3968 34 1 2.0699 1.5876 2.1491 35 1 3.5289 3.5254 0.2934 36 1 5.1551 5.2246 -0.2673 37 1 7.3066 5.7635 -1.3338 38 1 9.1814 3.3932 -3.4175 39 1 8.9699 5.1032 -2.9709 40 1 12.6036 4.7520 -3.4581 41 1 7.8181 1.6641 -2.3961 42 1 5.6678 1.1143 -1.3324 43 1 4.2682 -1.0277 1.9990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604946991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:35 Heat of formation + Delta-G solvation = -81.528467 kcal Electronic energy + Delta-G solvation = -23115.370381 eV Core-core repulsion = 19738.679081 eV Total energy + Delta-G solvation = -3376.691300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80413 -38.79130 -37.31866 -36.27175 -34.68533 -32.90783 -31.01170 -30.24302 -29.38268 -27.88525 -25.98582 -24.32168 -23.02191 -22.42949 -21.59888 -20.16478 -19.78599 -18.06290 -17.45716 -16.68694 -16.22263 -15.94935 -15.72053 -14.90960 -14.80922 -14.32741 -14.13022 -13.93131 -13.63036 -13.34275 -12.96852 -12.77641 -12.67817 -12.41272 -12.22565 -12.07990 -11.96575 -11.64397 -11.32019 -11.20769 -11.09271 -11.00632 -10.79304 -10.65056 -10.61504 -10.49393 -10.09746 -9.80938 -9.40880 -9.07123 -8.34980 -8.22799 -6.84872 -5.95451 -3.99455 2.11674 2.18064 2.28713 2.87731 3.35329 3.41134 3.46718 3.49552 4.26151 4.46509 4.48661 4.57606 4.69032 4.93544 4.98078 5.14432 5.16055 5.29058 5.33303 5.37498 5.50859 5.54415 5.56691 5.63617 5.68380 5.76422 6.00042 6.02756 6.09717 6.12879 6.32623 6.38185 6.42442 6.71052 6.81776 7.29408 7.31654 7.34925 7.61626 7.74633 7.87388 7.97948 7.99202 8.00512 8.43606 9.06598 9.64028 11.13220 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028173 B = 0.003206 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.616680 B = 8732.112168 C = 9087.120142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.092 4.092 4 H 0.093 0.907 5 C -0.154 4.154 6 C 0.174 3.826 7 H 0.115 0.885 8 N -0.730 5.730 9 C 0.181 3.819 10 C -0.184 4.184 11 C -0.080 4.080 12 C -0.079 4.079 13 C 0.053 3.947 14 C -0.508 4.508 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.081 4.081 23 C -0.192 4.192 24 C 0.452 3.548 25 O -0.495 6.495 26 O -0.517 6.517 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.400 0.600 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.669 -8.697 6.397 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.111 4.111 4 H 0.111 0.889 5 C -0.212 4.212 6 C 0.064 3.936 7 H 0.133 0.867 8 N -0.364 5.364 9 C 0.083 3.917 10 C -0.206 4.206 11 C -0.099 4.099 12 C -0.080 4.080 13 C 0.016 3.984 14 C -0.546 4.546 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.099 4.099 23 C -0.214 4.214 24 C 0.291 3.709 25 O -0.380 6.380 26 O -0.329 6.329 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.135 0.865 42 H 0.121 0.879 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -23.479 -8.445 6.124 25.692 hybrid contribution 1.097 -0.148 1.474 1.843 sum -22.382 -8.594 7.598 25.150 Atomic orbital electron populations 1.21809 0.95635 1.01711 1.01782 1.21739 0.95813 0.94746 1.04112 1.21396 0.91276 0.98479 0.99958 0.88867 1.21954 1.02135 1.00563 0.96515 1.20398 0.94004 0.84240 0.94971 0.86739 1.44152 1.22043 1.05649 1.64600 1.17535 0.85991 0.93667 0.94521 1.20436 0.98875 0.94026 1.07236 1.20846 0.93010 0.99490 0.96516 1.20486 0.97423 0.92309 0.97829 1.18256 0.87422 0.97393 0.95337 1.21142 0.91066 1.45875 0.96556 0.92550 1.25014 0.98775 0.95343 0.95298 1.69959 1.19689 1.47091 1.16855 0.86571 0.81727 0.77858 0.81773 1.20670 1.21221 1.19826 1.20828 0.94207 0.96668 0.98215 1.20461 0.97543 0.97055 1.06328 1.24719 0.79062 0.80107 0.87009 1.90762 1.33060 1.68433 1.45739 1.84644 1.68929 1.26703 1.52628 0.92617 0.92635 0.92787 0.91373 0.89623 0.92315 0.91379 0.92741 0.76384 0.87236 0.86400 0.95640 0.95595 0.92971 0.86549 0.87914 0.73991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.13 -0.85 4.69 -26.73 -0.13 -0.98 16 3 C -0.09 -0.70 2.38 -90.62 -0.22 -0.91 16 4 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.15 -1.15 8.53 37.16 0.32 -0.83 16 6 C 0.17 1.84 2.05 -69.08 -0.14 1.70 16 7 H 0.12 1.19 6.49 -51.93 -0.34 0.86 16 8 N -0.73 -9.30 4.68 -53.29 -0.25 -9.55 16 9 C 0.18 3.00 6.55 -83.79 -0.55 2.46 16 10 C -0.18 -3.21 9.90 -39.38 -0.39 -3.60 16 11 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 12 C -0.08 -1.79 5.07 -104.59 -0.53 -2.32 16 13 C 0.05 1.40 5.10 -29.04 -0.15 1.25 16 14 C -0.51 -14.73 9.09 -34.44 -0.31 -15.05 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 18 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.08 -1.65 9.69 -39.61 -0.38 -2.04 16 23 C -0.19 -3.41 9.16 -39.38 -0.36 -3.77 16 24 C 0.45 5.47 6.22 36.01 0.22 5.69 16 25 O -0.49 -8.16 17.12 -18.76 -0.32 -8.48 16 26 O -0.52 -4.47 10.43 -39.24 -0.41 -4.88 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.30 6.57 -51.93 -0.34 -0.04 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.62 5.68 -51.93 -0.29 0.33 16 32 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 33 H 0.07 0.41 6.57 -51.93 -0.34 0.07 16 34 H 0.05 0.47 7.22 -51.93 -0.37 0.09 16 35 H 0.40 4.44 6.88 -40.82 -0.28 4.16 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 38 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 42 H 0.10 1.59 6.20 -52.49 -0.33 1.26 16 43 H 0.40 2.16 9.10 45.56 0.41 2.57 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -33.99 349.77 -8.29 -42.28 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.56 Total: 3.87 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.74 Total: -19.36 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.49 Total: -35.89 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.73 Total: -13.36 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.99 -8.29 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604946991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.252 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds