Wall clock time and date at job start Tue Mar 31 2020 07:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47210 * 2 1 4 4 H 1.08999 * 109.47071 * 304.99690 * 3 2 1 5 5 C 1.52999 * 109.47471 * 64.99899 * 3 2 1 6 6 C 1.52997 * 109.47201 * 185.00010 * 3 2 1 7 7 H 1.09005 * 109.47456 * 59.99169 * 6 3 2 8 8 N 1.46500 * 109.47419 * 179.97438 * 6 3 2 9 9 C 1.39676 * 120.00062 * 204.99556 * 8 6 3 10 10 C 1.38906 * 120.07171 * 179.97438 * 9 8 6 11 11 C 1.38111 * 119.92343 * 179.97438 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00253 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47148 * 90.00263 * 18 16 14 20 20 H 1.48500 * 109.46768 * 209.99956 * 18 16 14 21 21 H 1.48496 * 109.47300 * 329.99708 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 C 1.50701 * 109.46998 * 300.00147 * 6 3 2 25 25 O 1.20837 * 119.99659 * 240.00235 * 24 6 3 26 26 O 1.34223 * 120.00313 * 59.99537 * 24 6 3 27 27 H 1.08995 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47191 * 300.00462 * 1 2 3 29 29 H 1.09000 * 109.47191 * 59.99825 * 1 2 3 30 30 H 1.09001 * 109.47191 * 239.99538 * 2 1 3 31 31 H 1.09000 * 109.46740 * 119.99887 * 2 1 3 32 32 H 1.08995 * 109.46888 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46791 * 299.99702 * 5 3 2 34 34 H 1.08999 * 109.47144 * 59.99836 * 5 3 2 35 35 H 0.96994 * 119.99675 * 24.99984 * 8 6 3 36 36 H 1.08000 * 120.03932 * 359.96119 * 10 9 8 37 37 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 39 39 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 40 40 H 0.96990 * 120.00273 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 42 42 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 43 43 H 0.96701 * 116.99912 * 180.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 1 3.8532 0.9569 -1.0571 8 7 4.0532 2.8255 -0.1263 9 6 5.2737 3.1345 -0.7312 10 6 5.7378 4.4437 -0.7331 11 6 6.9453 4.7457 -1.3316 12 6 7.6892 3.7474 -1.9336 13 6 9.0031 4.0818 -2.5916 14 6 10.1161 3.9561 -1.5835 15 1 9.8943 3.6630 -0.5680 16 6 11.4177 4.2144 -1.9578 17 7 11.6880 4.5699 -3.1948 18 14 12.7975 4.0579 -0.7083 19 1 13.3289 2.6715 -0.7287 20 1 13.8848 5.0099 -1.0499 21 1 12.2756 4.3682 0.6469 22 6 7.2327 2.4420 -1.9285 23 6 6.0261 2.1331 -1.3318 24 6 4.1657 0.6990 1.0381 25 8 4.9240 1.2638 1.7905 26 8 3.8584 -0.5920 1.2391 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.9983 3.1544 1.3070 33 1 0.5490 2.1254 1.3968 34 1 2.0699 1.5876 2.1491 35 1 3.5289 3.5254 0.2934 36 1 5.1551 5.2246 -0.2673 37 1 7.3066 5.7635 -1.3338 38 1 9.1814 3.3932 -3.4175 39 1 8.9699 5.1032 -2.9709 40 1 12.6036 4.7520 -3.4581 41 1 7.8181 1.6641 -2.3961 42 1 5.6678 1.1143 -1.3324 43 1 4.2682 -1.0277 1.9990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604946991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:34 Heat of formation + Delta-G solvation = -102.466907 kcal Electronic energy + Delta-G solvation = -23116.278340 eV Core-core repulsion = 19738.679081 eV Total energy + Delta-G solvation = -3377.599259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75000 -40.16187 -38.20471 -37.19587 -35.97952 -34.79411 -32.36156 -31.72194 -30.50220 -28.83873 -27.64939 -25.04638 -24.79283 -23.73727 -22.68358 -21.51277 -20.68622 -18.97636 -18.60087 -18.45290 -17.65818 -16.97865 -16.83191 -16.55674 -15.79783 -15.56506 -15.19500 -15.04885 -14.65473 -14.50899 -14.35099 -14.17609 -14.01684 -13.72442 -13.22373 -13.21379 -12.93973 -12.80783 -12.71595 -12.56757 -12.46428 -12.41931 -11.89437 -11.79488 -11.72086 -11.53049 -11.46105 -11.37340 -11.30839 -10.70701 -10.59364 -9.72718 -8.37794 -8.05144 -6.31521 0.62650 0.80510 1.23343 1.37886 1.39044 1.51010 1.97153 2.40126 2.50613 3.10974 3.12860 3.56472 3.79308 3.97227 4.08170 4.16057 4.27653 4.34132 4.46439 4.54984 4.59389 4.67709 4.73000 4.76624 4.78903 4.94009 5.03656 5.13332 5.14592 5.16131 5.31795 5.32823 5.37760 5.50164 5.50995 5.61454 5.64328 5.66055 5.78330 5.93125 6.19437 6.22000 6.43661 6.78637 6.81544 7.03141 7.36661 8.90388 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028173 B = 0.003206 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.616680 B = 8732.112168 C = 9087.120142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.082 4.082 4 H 0.107 0.893 5 C -0.154 4.154 6 C 0.166 3.834 7 H 0.123 0.877 8 N -0.719 5.719 9 C 0.198 3.802 10 C -0.183 4.183 11 C -0.089 4.089 12 C -0.117 4.117 13 C 0.064 3.936 14 C -0.527 4.527 15 H 0.048 0.952 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.269 1.269 22 C -0.090 4.090 23 C -0.193 4.193 24 C 0.459 3.541 25 O -0.544 6.544 26 O -0.503 6.503 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.410 0.590 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.000 1.000 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.877 -9.690 7.880 28.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.101 4.101 4 H 0.125 0.875 5 C -0.212 4.212 6 C 0.057 3.943 7 H 0.140 0.860 8 N -0.352 5.352 9 C 0.097 3.903 10 C -0.205 4.205 11 C -0.108 4.108 12 C -0.119 4.119 13 C 0.027 3.973 14 C -0.565 4.565 15 H 0.067 0.933 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.109 4.109 23 C -0.215 4.215 24 C 0.300 3.700 25 O -0.434 6.434 26 O -0.316 6.316 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.249 0.751 36 H 0.159 0.841 37 H 0.132 0.868 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.145 0.855 43 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -25.745 -9.477 7.622 28.473 hybrid contribution 1.612 0.061 1.044 1.922 sum -24.132 -9.416 8.666 27.315 Atomic orbital electron populations 1.21793 0.94631 1.02146 1.02186 1.21724 0.96628 0.93929 1.03941 1.21395 0.88725 0.99400 1.00594 0.87491 1.21967 1.03233 1.00159 0.95802 1.20724 0.95971 0.82826 0.94739 0.86000 1.44188 1.20463 1.07231 1.63351 1.17628 0.86760 0.93065 0.92863 1.20669 0.97925 0.95409 1.06478 1.20867 0.94135 0.98850 0.96918 1.20174 0.96745 0.94155 1.00833 1.17983 0.89747 0.95135 0.94458 1.21434 0.92378 1.46083 0.96640 0.93323 1.25915 1.01406 0.94733 0.97356 1.70077 1.20538 1.47712 1.18732 0.85479 0.78385 0.78325 0.79075 1.19679 1.20155 1.19364 1.20822 0.95501 0.95654 0.98936 1.20617 0.96527 0.98638 1.05734 1.24876 0.77861 0.80724 0.86496 1.90759 1.35386 1.69608 1.47621 1.84605 1.68435 1.25171 1.53350 0.92253 0.92300 0.92310 0.91172 0.90178 0.92471 0.89652 0.94052 0.75143 0.84065 0.86761 0.98208 0.98079 0.92579 0.87115 0.85454 0.72058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 71.98 0.70 -0.53 16 2 C -0.12 -1.29 4.69 30.59 0.14 -1.14 16 3 C -0.08 -0.98 2.38 -10.79 -0.03 -1.00 16 4 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.15 -1.84 8.53 71.98 0.61 -1.22 16 6 C 0.17 3.05 2.05 44.24 0.09 3.14 16 7 H 0.12 2.14 6.49 -2.38 -0.02 2.12 16 8 N -0.72 -16.32 4.68 -322.51 -1.51 -17.83 16 9 C 0.20 6.19 6.55 38.21 0.25 6.44 16 10 C -0.18 -6.14 9.90 22.40 0.22 -5.91 16 11 C -0.09 -3.68 9.69 22.25 0.22 -3.46 16 12 C -0.12 -5.53 5.07 -19.84 -0.10 -5.63 16 13 C 0.06 3.60 5.10 29.10 0.15 3.74 16 14 C -0.53 -31.76 9.09 25.60 0.23 -31.53 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 18 Si 0.96 46.19 29.54 68.60 2.03 48.21 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.09 -3.79 9.69 22.25 0.22 -3.58 16 23 C -0.19 -6.64 9.16 22.40 0.21 -6.43 16 24 C 0.46 10.07 6.22 71.24 0.44 10.51 16 25 O -0.54 -17.15 17.12 21.93 0.38 -16.78 16 26 O -0.50 -7.39 10.43 -51.34 -0.54 -7.93 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.45 6.57 -2.39 -0.02 0.43 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.93 5.68 -2.39 -0.01 0.91 16 32 H 0.06 0.70 6.51 -2.39 -0.02 0.68 16 33 H 0.08 0.73 6.57 -2.39 -0.02 0.72 16 34 H 0.04 0.61 7.22 -2.39 -0.02 0.59 16 35 H 0.41 7.81 6.88 -92.71 -0.64 7.17 16 36 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 37 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 38 H 0.00 -0.02 8.09 -2.39 -0.02 -0.04 16 39 H 0.00 0.05 8.08 -2.39 -0.02 0.03 16 40 H 0.27 15.39 8.31 -92.72 -0.77 14.62 16 41 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.13 3.67 6.20 -2.91 -0.02 3.65 16 43 H 0.42 3.48 9.10 -74.06 -0.67 2.81 16 Total: -1.00 -75.56 349.77 4.17 -71.39 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.28 Total: 16.40 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.81 Total: -35.93 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.23 Total: -75.36 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.16 Total: -24.71 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -75.56 4.17 -71.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604946991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.077 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds