Wall clock time and date at job start Tue Mar 31 2020 07:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47659 * 2 1 4 4 H 1.09002 * 109.46787 * 305.73643 * 3 2 1 5 5 C 1.53000 * 109.46797 * 65.73744 * 3 2 1 6 6 C 1.52992 * 109.47396 * 185.73689 * 3 2 1 7 7 H 1.09002 * 109.47054 * 57.60093 * 6 3 2 8 8 N 1.46501 * 109.47182 * 297.60549 * 6 3 2 9 9 C 1.39680 * 120.00489 * 154.99862 * 8 6 3 10 10 C 1.38902 * 120.07493 * 179.97438 * 9 8 6 11 11 C 1.38106 * 119.92594 * 179.97438 * 10 9 8 12 12 C 1.38292 * 120.06973 * 0.27669 * 11 10 9 13 13 C 1.50701 * 119.92178 * 179.69951 * 12 11 10 14 14 C 1.50699 * 109.47072 * 90.00356 * 13 12 11 15 15 H 1.08004 * 119.99606 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00321 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00157 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99724 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46894 * 89.99723 * 18 16 14 20 20 H 1.48502 * 109.47030 * 209.99340 * 18 16 14 21 21 H 1.48492 * 109.47256 * 329.99691 * 18 16 14 22 22 C 1.38284 * 120.15040 * 359.44908 * 12 11 10 23 23 C 1.38102 * 120.07436 * 0.55363 * 22 12 11 24 24 C 1.50700 * 109.47547 * 177.60262 * 6 3 2 25 25 O 1.20824 * 119.99799 * 97.25708 * 24 6 3 26 26 O 1.34227 * 120.00094 * 277.26735 * 24 6 3 27 27 H 1.08999 * 109.46790 * 300.00311 * 1 2 3 28 28 H 1.09004 * 109.46732 * 59.99519 * 1 2 3 29 29 H 1.08999 * 109.47440 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47161 * 239.99673 * 2 1 3 31 31 H 1.09004 * 109.46732 * 120.00480 * 2 1 3 32 32 H 1.09004 * 109.47081 * 299.99617 * 5 3 2 33 33 H 1.08993 * 109.47474 * 60.00465 * 5 3 2 34 34 H 1.08999 * 109.46764 * 180.02562 * 5 3 2 35 35 H 0.97003 * 119.99798 * 334.99750 * 8 6 3 36 36 H 1.08000 * 120.04095 * 359.95928 * 10 9 8 37 37 H 1.07998 * 119.96717 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.46873 * 209.99777 * 13 12 11 39 39 H 1.08994 * 109.47445 * 330.00030 * 13 12 11 40 40 H 0.97003 * 120.00186 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.96127 * 180.24728 * 22 12 11 42 42 H 1.08005 * 120.04193 * 179.70173 * 23 22 12 43 43 H 0.96701 * 117.00266 * 180.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5954 1.9851 -0.8342 5 6 1.6513 2.1208 1.3151 6 6 3.5633 1.4448 -0.1442 7 1 3.8423 0.9239 -1.0601 8 7 4.1637 0.7650 1.0063 9 6 5.4257 0.1777 0.8901 10 6 5.9967 -0.4667 1.9801 11 6 7.2443 -1.0468 1.8616 12 6 7.9276 -0.9817 0.6610 13 6 9.2918 -1.6100 0.5374 14 6 9.1468 -3.0413 0.0886 15 1 8.1649 -3.4545 -0.0897 16 6 10.2675 -3.8231 -0.0954 17 7 10.1409 -5.0719 -0.4876 18 14 11.9656 -3.1082 0.2123 19 1 12.3471 -3.3314 1.6301 20 1 12.9516 -3.7743 -0.6763 21 1 11.9482 -1.6509 -0.0721 22 6 7.3596 -0.3459 -0.4277 23 6 6.1124 0.2364 -0.3160 24 6 4.0602 2.8663 -0.2034 25 8 4.4813 3.4010 0.7949 26 8 4.0347 3.5383 -1.3650 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5661 2.1192 1.4178 33 1 2.0961 1.5782 2.1492 34 1 2.0143 3.1486 1.3149 35 1 3.6849 0.7229 1.8489 36 1 5.4656 -0.5138 2.9194 37 1 7.6887 -1.5484 2.7086 38 1 9.8812 -1.0577 -0.1945 39 1 9.7939 -1.5816 1.5044 40 1 10.9294 -5.6221 -0.6167 41 1 7.8942 -0.3003 -1.3650 42 1 5.6713 0.7370 -1.1654 43 1 4.3642 4.4474 -1.3536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604946994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:40 Heat of formation + Delta-G solvation = -81.026031 kcal Electronic energy + Delta-G solvation = -23128.186363 eV Core-core repulsion = 19751.516850 eV Total energy + Delta-G solvation = -3376.669513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79408 -38.92732 -37.56357 -36.16024 -34.67049 -32.82591 -31.19940 -30.33044 -29.76679 -27.91850 -26.24408 -24.73713 -22.66141 -22.37517 -21.44414 -20.32464 -19.58936 -18.23815 -17.42567 -16.84608 -16.70327 -16.04025 -15.57325 -15.12863 -14.67437 -14.39643 -14.04681 -13.90627 -13.76480 -13.46196 -13.04861 -12.85081 -12.62267 -12.42702 -12.34321 -12.28138 -11.89411 -11.64478 -11.55352 -11.45166 -11.34807 -11.09210 -10.91367 -10.72017 -10.59955 -10.21541 -10.17205 -9.91728 -9.46505 -9.16321 -8.53291 -8.31662 -6.90015 -6.02370 -4.00425 2.01572 2.08192 2.20547 2.81697 3.32201 3.39764 3.43607 3.49344 4.26988 4.46033 4.46258 4.51804 4.55422 4.91532 5.05417 5.08629 5.20122 5.23091 5.29670 5.32624 5.44281 5.48406 5.55892 5.64755 5.69034 5.78594 5.92145 5.98736 6.00696 6.05626 6.19906 6.27755 6.35656 6.60083 6.72352 7.05131 7.07956 7.15076 7.28927 7.65404 7.71743 7.76952 7.78662 7.90555 8.56868 9.04096 9.58848 11.10747 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023078 B = 0.003412 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.962233 B = 8204.381485 C = 8728.572220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.090 4.090 4 H 0.091 0.909 5 C -0.155 4.155 6 C 0.173 3.827 7 H 0.114 0.886 8 N -0.726 5.726 9 C 0.180 3.820 10 C -0.183 4.183 11 C -0.077 4.077 12 C -0.075 4.075 13 C 0.019 3.981 14 C -0.509 4.509 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.077 4.077 23 C -0.195 4.195 24 C 0.457 3.543 25 O -0.502 6.502 26 O -0.520 6.520 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.401 0.599 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.788 15.658 0.553 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.110 0.890 5 C -0.212 4.212 6 C 0.064 3.936 7 H 0.131 0.869 8 N -0.361 5.361 9 C 0.082 3.918 10 C -0.205 4.205 11 C -0.096 4.096 12 C -0.077 4.077 13 C -0.018 4.018 14 C -0.547 4.547 15 H 0.091 0.909 16 C -0.134 4.134 17 N -0.541 5.541 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.095 4.095 23 C -0.217 4.217 24 C 0.296 3.704 25 O -0.388 6.388 26 O -0.332 6.332 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -18.729 15.299 0.624 24.191 hybrid contribution 1.079 0.881 0.430 1.458 sum -17.650 16.180 1.054 23.967 Atomic orbital electron populations 1.21823 0.95468 1.01939 1.01820 1.21538 0.95911 0.94543 1.03385 1.21396 0.90962 0.98599 0.99986 0.89031 1.21948 1.02008 1.00628 0.96647 1.20352 0.93817 0.86021 0.93447 0.86877 1.44195 1.18201 1.60703 1.13041 1.17600 0.85137 0.94643 0.94403 1.20434 0.97603 1.05258 0.97159 1.20825 0.93531 0.97364 0.97850 1.20083 0.98489 0.96564 0.92547 1.18719 0.89622 0.96508 0.96988 1.21008 0.95070 0.93503 1.45167 0.90854 1.25011 0.99018 0.94681 0.94680 1.69906 1.29811 1.07086 1.47337 0.86812 0.84430 0.79909 0.78398 1.20237 1.21362 1.18938 1.20801 0.94102 0.96221 0.98415 1.20516 0.97265 1.07944 0.95964 1.24754 0.75023 0.90239 0.80421 1.90704 1.42438 1.69234 1.36398 1.84563 1.78849 1.32175 1.37581 0.92534 0.92699 0.92442 0.91192 0.91088 0.91484 0.92121 0.92479 0.76158 0.87053 0.86300 0.95739 0.96144 0.92717 0.86410 0.87438 0.73568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.68 37.16 0.36 -0.61 16 2 C -0.12 -0.88 5.18 -26.73 -0.14 -1.02 16 3 C -0.09 -0.70 2.20 -90.62 -0.20 -0.90 16 4 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.16 -1.19 8.52 37.16 0.32 -0.87 16 6 C 0.17 1.81 1.91 -69.09 -0.13 1.68 16 7 H 0.11 1.18 6.48 -51.93 -0.34 0.84 16 8 N -0.73 -8.90 4.21 -53.29 -0.22 -9.13 16 9 C 0.18 2.86 6.63 -83.79 -0.56 2.31 16 10 C -0.18 -3.06 9.90 -39.38 -0.39 -3.45 16 11 C -0.08 -1.50 9.69 -39.61 -0.38 -1.88 16 12 C -0.08 -1.62 5.07 -104.58 -0.53 -2.15 16 13 C 0.02 0.46 4.17 -29.04 -0.12 0.34 16 14 C -0.51 -14.63 9.65 -34.44 -0.33 -14.97 16 15 H 0.07 2.30 7.98 -52.48 -0.42 1.88 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 18 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 22 C -0.08 -1.50 9.69 -39.61 -0.38 -1.89 16 23 C -0.19 -3.30 9.16 -39.38 -0.36 -3.66 16 24 C 0.46 5.33 6.44 36.01 0.23 5.57 16 25 O -0.50 -7.48 16.89 -18.75 -0.32 -7.79 16 26 O -0.52 -4.73 13.42 -39.25 -0.53 -5.25 16 27 H 0.06 0.33 6.59 -51.93 -0.34 -0.01 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.59 7.80 -51.93 -0.41 0.19 16 32 H 0.07 0.42 6.59 -51.93 -0.34 0.08 16 33 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 34 H 0.06 0.51 6.97 -51.93 -0.36 0.15 16 35 H 0.40 4.39 6.68 -40.82 -0.27 4.12 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.02 0.59 7.14 -51.93 -0.37 0.22 16 39 H 0.02 0.49 7.51 -51.93 -0.39 0.10 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.11 1.58 6.20 -52.48 -0.33 1.25 16 43 H 0.41 2.16 9.10 45.56 0.41 2.57 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -33.79 350.57 -8.01 -41.80 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.61 Total: 4.83 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.72 Total: -19.64 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.55 Total: -36.25 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.84 Total: -13.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.79 -8.01 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604946994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.228 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds