Wall clock time and date at job start Tue Mar 31 2020 07:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47659 * 2 1 4 4 H 1.09002 * 109.46787 * 305.73643 * 3 2 1 5 5 C 1.53000 * 109.46797 * 65.73744 * 3 2 1 6 6 C 1.52992 * 109.47396 * 185.73689 * 3 2 1 7 7 H 1.09002 * 109.47054 * 57.60093 * 6 3 2 8 8 N 1.46501 * 109.47182 * 297.60549 * 6 3 2 9 9 C 1.39680 * 120.00489 * 154.99862 * 8 6 3 10 10 C 1.38902 * 120.07493 * 179.97438 * 9 8 6 11 11 C 1.38106 * 119.92594 * 179.97438 * 10 9 8 12 12 C 1.38292 * 120.06973 * 0.27669 * 11 10 9 13 13 C 1.50701 * 119.92178 * 179.69951 * 12 11 10 14 14 C 1.50699 * 109.47072 * 90.00356 * 13 12 11 15 15 H 1.08004 * 119.99606 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00321 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00157 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99724 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46894 * 89.99723 * 18 16 14 20 20 H 1.48502 * 109.47030 * 209.99340 * 18 16 14 21 21 H 1.48492 * 109.47256 * 329.99691 * 18 16 14 22 22 C 1.38284 * 120.15040 * 359.44908 * 12 11 10 23 23 C 1.38102 * 120.07436 * 0.55363 * 22 12 11 24 24 C 1.50700 * 109.47547 * 177.60262 * 6 3 2 25 25 O 1.20824 * 119.99799 * 97.25708 * 24 6 3 26 26 O 1.34227 * 120.00094 * 277.26735 * 24 6 3 27 27 H 1.08999 * 109.46790 * 300.00311 * 1 2 3 28 28 H 1.09004 * 109.46732 * 59.99519 * 1 2 3 29 29 H 1.08999 * 109.47440 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47161 * 239.99673 * 2 1 3 31 31 H 1.09004 * 109.46732 * 120.00480 * 2 1 3 32 32 H 1.09004 * 109.47081 * 299.99617 * 5 3 2 33 33 H 1.08993 * 109.47474 * 60.00465 * 5 3 2 34 34 H 1.08999 * 109.46764 * 180.02562 * 5 3 2 35 35 H 0.97003 * 119.99798 * 334.99750 * 8 6 3 36 36 H 1.08000 * 120.04095 * 359.95928 * 10 9 8 37 37 H 1.07998 * 119.96717 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.46873 * 209.99777 * 13 12 11 39 39 H 1.08994 * 109.47445 * 330.00030 * 13 12 11 40 40 H 0.97003 * 120.00186 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.96127 * 180.24728 * 22 12 11 42 42 H 1.08005 * 120.04193 * 179.70173 * 23 22 12 43 43 H 0.96701 * 117.00266 * 180.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5954 1.9851 -0.8342 5 6 1.6513 2.1208 1.3151 6 6 3.5633 1.4448 -0.1442 7 1 3.8423 0.9239 -1.0601 8 7 4.1637 0.7650 1.0063 9 6 5.4257 0.1777 0.8901 10 6 5.9967 -0.4667 1.9801 11 6 7.2443 -1.0468 1.8616 12 6 7.9276 -0.9817 0.6610 13 6 9.2918 -1.6100 0.5374 14 6 9.1468 -3.0413 0.0886 15 1 8.1649 -3.4545 -0.0897 16 6 10.2675 -3.8231 -0.0954 17 7 10.1409 -5.0719 -0.4876 18 14 11.9656 -3.1082 0.2123 19 1 12.3471 -3.3314 1.6301 20 1 12.9516 -3.7743 -0.6763 21 1 11.9482 -1.6509 -0.0721 22 6 7.3596 -0.3459 -0.4277 23 6 6.1124 0.2364 -0.3160 24 6 4.0602 2.8663 -0.2034 25 8 4.4813 3.4010 0.7949 26 8 4.0347 3.5383 -1.3650 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5661 2.1192 1.4178 33 1 2.0961 1.5782 2.1492 34 1 2.0143 3.1486 1.3149 35 1 3.6849 0.7229 1.8489 36 1 5.4656 -0.5138 2.9194 37 1 7.6887 -1.5484 2.7086 38 1 9.8812 -1.0577 -0.1945 39 1 9.7939 -1.5816 1.5044 40 1 10.9294 -5.6221 -0.6167 41 1 7.8942 -0.3003 -1.3650 42 1 5.6713 0.7370 -1.1654 43 1 4.3642 4.4474 -1.3536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604946994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:39 Heat of formation + Delta-G solvation = -102.172296 kcal Electronic energy + Delta-G solvation = -23129.103334 eV Core-core repulsion = 19751.516850 eV Total energy + Delta-G solvation = -3377.586484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71914 -40.19998 -38.46769 -37.03043 -35.96173 -34.69512 -32.57954 -31.75000 -30.87276 -28.89500 -27.75270 -25.37691 -24.44788 -23.69040 -22.34281 -21.67174 -20.53364 -19.13625 -18.92759 -18.53132 -17.77979 -16.96695 -16.71350 -16.42128 -15.84318 -15.74818 -15.25660 -15.01002 -14.77069 -14.59719 -14.33177 -14.18034 -14.14279 -13.75326 -13.43608 -13.27673 -13.00302 -12.95920 -12.50433 -12.48155 -12.42566 -12.21829 -12.04685 -11.78193 -11.75421 -11.66889 -11.51686 -11.45122 -11.41176 -10.76125 -10.68261 -9.73859 -8.29170 -8.20637 -6.31001 0.61712 0.77903 1.16885 1.37260 1.38827 1.51276 1.95230 2.37417 2.50753 3.07098 3.09637 3.56108 3.76332 3.88370 4.05708 4.14162 4.25159 4.38146 4.41592 4.47039 4.55848 4.65068 4.68851 4.70510 4.74410 4.87110 5.00221 5.07250 5.08422 5.12533 5.13624 5.26455 5.29443 5.42158 5.45070 5.52555 5.59430 5.61003 5.63850 5.93255 6.11645 6.29883 6.42452 6.74930 6.77121 6.99054 7.32268 8.89534 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023078 B = 0.003412 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.962233 B = 8204.381485 C = 8728.572220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.081 4.081 4 H 0.108 0.892 5 C -0.153 4.153 6 C 0.167 3.833 7 H 0.118 0.882 8 N -0.716 5.716 9 C 0.195 3.805 10 C -0.185 4.185 11 C -0.088 4.088 12 C -0.117 4.117 13 C 0.027 3.973 14 C -0.516 4.516 15 H 0.028 0.972 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.950 3.050 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.248 1.248 22 C -0.088 4.088 23 C -0.198 4.198 24 C 0.462 3.538 25 O -0.538 6.538 26 O -0.513 6.513 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.410 0.590 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.267 0.733 41 H 0.116 0.884 42 H 0.131 0.869 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.991 17.723 0.727 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.100 4.100 4 H 0.126 0.874 5 C -0.210 4.210 6 C 0.058 3.942 7 H 0.136 0.864 8 N -0.350 5.350 9 C 0.094 3.906 10 C -0.207 4.207 11 C -0.106 4.106 12 C -0.118 4.118 13 C -0.011 4.011 14 C -0.554 4.554 15 H 0.046 0.954 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.773 3.227 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.172 1.172 22 C -0.107 4.107 23 C -0.220 4.220 24 C 0.302 3.698 25 O -0.427 6.427 26 O -0.326 6.326 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.248 0.752 36 H 0.157 0.843 37 H 0.137 0.863 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -19.979 17.406 0.786 26.510 hybrid contribution 1.240 0.289 0.320 1.312 sum -18.740 17.695 1.106 25.798 Atomic orbital electron populations 1.21807 0.94319 1.02135 1.02562 1.21519 0.96896 0.94115 1.02726 1.21389 0.88807 0.99002 1.00760 0.87400 1.21936 1.03118 0.99639 0.96331 1.20621 0.95487 0.85376 0.92730 0.86448 1.44223 1.16761 1.59800 1.14196 1.17698 0.86015 0.93212 0.93669 1.20672 0.96765 1.04568 0.98674 1.20914 0.94668 0.97848 0.97210 1.19953 0.98050 0.99374 0.94448 1.18549 0.91933 0.93893 0.96693 1.21239 0.93244 0.95926 1.44958 0.95361 1.25978 1.03806 0.94923 0.94337 1.70061 1.31318 1.08807 1.48943 0.85662 0.78428 0.79848 0.78765 1.19047 1.20800 1.17188 1.20873 0.95306 0.96647 0.97837 1.20686 0.96384 1.07640 0.97248 1.24812 0.74092 0.90504 0.80357 1.90702 1.44214 1.70126 1.37653 1.84515 1.78420 1.33512 1.36110 0.91848 0.91896 0.92591 0.91705 0.91949 0.89748 0.92473 0.93758 0.75160 0.84262 0.86343 0.95687 0.95728 0.92446 0.86604 0.85133 0.71483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.68 71.98 0.70 -0.82 16 2 C -0.11 -1.47 5.18 30.59 0.16 -1.31 16 3 C -0.08 -1.03 2.20 -10.80 -0.02 -1.06 16 4 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 5 C -0.15 -1.95 8.52 71.98 0.61 -1.34 16 6 C 0.17 3.07 1.91 44.24 0.08 3.16 16 7 H 0.12 2.13 6.48 -2.39 -0.02 2.11 16 8 N -0.72 -15.98 4.21 -322.52 -1.36 -17.34 16 9 C 0.19 5.87 6.63 38.21 0.25 6.12 16 10 C -0.18 -5.96 9.90 22.40 0.22 -5.74 16 11 C -0.09 -3.42 9.69 22.25 0.22 -3.21 16 12 C -0.12 -5.12 5.07 -19.84 -0.10 -5.22 16 13 C 0.03 1.32 4.17 29.10 0.12 1.44 16 14 C -0.52 -30.72 9.65 25.60 0.25 -30.47 16 15 H 0.03 1.87 7.98 -2.91 -0.02 1.85 16 16 C 0.01 0.37 5.47 84.65 0.46 0.83 16 17 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 18 Si 0.95 45.04 27.47 68.60 1.88 46.92 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 22 C -0.09 -3.46 9.69 22.25 0.22 -3.25 16 23 C -0.20 -6.45 9.16 22.40 0.21 -6.24 16 24 C 0.46 9.71 6.44 71.24 0.46 10.17 16 25 O -0.54 -15.07 16.89 21.97 0.37 -14.70 16 26 O -0.51 -7.90 13.42 -51.39 -0.69 -8.59 16 27 H 0.06 0.55 6.59 -2.39 -0.02 0.54 16 28 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.91 7.80 -2.38 -0.02 0.89 16 32 H 0.08 0.79 6.59 -2.39 -0.02 0.78 16 33 H 0.06 0.77 6.40 -2.39 -0.02 0.75 16 34 H 0.04 0.70 6.97 -2.39 -0.02 0.68 16 35 H 0.41 7.98 6.68 -92.71 -0.62 7.36 16 36 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.02 1.21 7.14 -2.38 -0.02 1.20 16 39 H 0.02 1.18 7.51 -2.39 -0.02 1.16 16 40 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 41 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.13 3.57 6.20 -2.91 -0.02 3.55 16 43 H 0.42 3.38 9.10 -74.06 -0.67 2.71 16 Total: -1.00 -74.85 350.57 4.01 -70.83 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.32 Total: 20.06 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 3.83 Total: -36.93 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.06 Total: -77.59 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.32 Total: -23.29 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -74.85 4.01 -70.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604946994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.340 kcal (2) G-P(sol) polarization free energy of solvation -74.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds