Wall clock time and date at job start Tue Mar 31 2020 07:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47272 * 2 1 4 4 H 1.09004 * 109.46725 * 55.00184 * 3 2 1 5 5 C 1.53000 * 109.47051 * 174.99852 * 3 2 1 6 6 C 1.53006 * 109.46968 * 185.00196 * 5 3 2 7 7 O 1.42902 * 109.46964 * 180.02562 * 6 5 3 8 8 N 1.46496 * 109.47045 * 295.00158 * 3 2 1 9 9 C 1.34778 * 120.00046 * 84.99930 * 8 3 2 10 10 O 1.21275 * 120.00087 * 359.97438 * 9 8 3 11 11 C 1.50696 * 119.99734 * 179.97438 * 9 8 3 12 12 H 1.09000 * 109.47492 * 299.99686 * 11 9 8 13 13 C 1.50702 * 109.47136 * 60.00352 * 11 9 8 14 14 H 1.07996 * 119.99806 * 236.43177 * 13 11 9 15 15 C 1.37877 * 120.00165 * 56.43681 * 13 11 9 16 16 N 1.31515 * 119.99675 * 7.72832 * 15 13 11 17 17 Si 1.86799 * 120.00044 * 187.73229 * 15 13 11 18 18 H 1.48499 * 109.47295 * 89.99764 * 17 15 13 19 19 H 1.48497 * 109.46969 * 209.99855 * 17 15 13 20 20 H 1.48504 * 109.47024 * 329.99473 * 17 15 13 21 21 C 1.50701 * 109.47054 * 180.02562 * 11 9 8 22 22 C 1.38236 * 120.00319 * 225.34250 * 21 11 9 23 23 C 1.38233 * 120.00088 * 179.78497 * 22 21 11 24 24 C 1.38234 * 120.00071 * 0.44137 * 23 22 21 25 25 C 1.38234 * 120.00092 * 359.81176 * 24 23 22 26 26 C 1.38232 * 120.00214 * 45.61043 * 21 11 9 27 27 H 1.08995 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47210 * 299.99699 * 1 2 3 29 29 H 1.08995 * 109.47047 * 60.00000 * 1 2 3 30 30 H 1.09001 * 109.47210 * 240.00301 * 2 1 3 31 31 H 1.09005 * 109.47170 * 120.00163 * 2 1 3 32 32 H 1.08998 * 109.47419 * 305.00011 * 5 3 2 33 33 H 1.08995 * 109.46794 * 65.00228 * 5 3 2 34 34 H 1.08998 * 109.46900 * 300.00133 * 6 5 3 35 35 H 1.08994 * 109.46860 * 60.00139 * 6 5 3 36 36 H 0.96696 * 113.99598 * 180.02562 * 7 6 5 37 37 H 0.97003 * 119.99842 * 264.99839 * 8 3 2 38 38 H 0.97003 * 119.99755 * 180.02562 * 16 15 13 39 39 H 1.08003 * 119.99598 * 359.97438 * 22 21 11 40 40 H 1.08006 * 119.99847 * 180.27240 * 23 22 21 41 41 H 1.07996 * 119.99676 * 179.83345 * 24 23 22 42 42 H 1.07997 * 120.00372 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.99965 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 6 4.0646 2.8850 0.2512 7 8 5.4888 2.8867 0.3681 8 7 1.6525 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3395 2.6319 -0.4344 11 6 0.0367 3.3386 -2.6544 12 1 0.7281 4.1542 -2.8666 13 6 0.0800 2.3375 -3.7800 14 1 0.6906 2.5292 -4.6499 15 6 -0.6600 1.1770 -3.6993 16 7 -1.5181 1.0114 -2.7166 17 14 -0.4436 -0.1601 -4.9857 18 1 0.6187 -1.1009 -4.5479 19 1 -1.7212 -0.8985 -5.1518 20 1 -0.0562 0.4564 -6.2800 21 6 -1.3608 3.8871 -2.5227 22 6 -2.2780 3.6932 -3.5386 23 6 -3.5611 4.1924 -3.4158 24 6 -3.9245 4.8934 -2.2811 25 6 -3.0058 5.0918 -1.2675 26 6 -1.7239 4.5887 -1.3884 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8571 0.8800 1.0113 33 1 4.0029 0.9836 -0.7596 34 1 3.7723 3.4493 -0.6344 35 1 3.6264 3.3457 1.1365 36 1 5.8754 3.7690 0.4519 37 1 2.2720 2.1231 -1.9977 38 1 -2.0385 0.1947 -2.6596 39 1 -1.9929 3.1491 -4.4269 40 1 -4.2790 4.0371 -4.2077 41 1 -4.9262 5.2857 -2.1865 42 1 -3.2897 5.6390 -0.3808 43 1 -1.0062 4.7436 -0.5964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631671306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:44 Heat of formation + Delta-G solvation = -73.621346 kcal Electronic energy + Delta-G solvation = -24618.896544 eV Core-core repulsion = 21242.548122 eV Total energy + Delta-G solvation = -3376.348422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.28146 -37.89335 -36.88657 -35.19845 -33.61373 -31.45657 -30.65924 -30.49013 -29.61980 -27.22932 -25.24786 -23.80863 -21.48286 -21.32192 -20.99177 -19.95779 -19.25231 -17.39221 -16.77101 -15.81886 -15.75282 -15.14388 -14.86826 -14.67213 -14.40728 -13.90577 -13.68464 -13.52903 -12.95024 -12.71359 -12.49407 -12.20006 -12.11392 -12.00317 -11.80232 -11.47394 -11.22471 -11.03016 -10.96327 -10.77592 -10.61724 -10.42578 -10.35893 -10.06773 -10.01168 -9.91340 -9.60603 -9.36391 -8.63117 -8.29543 -7.93101 -7.63186 -7.35866 -6.14467 -4.30181 2.59439 2.66574 3.19286 3.29103 3.29859 4.08817 4.19894 4.25466 4.38057 5.05842 5.09998 5.14580 5.23157 5.37815 5.59799 5.74473 5.83993 5.89208 5.98069 6.00864 6.08333 6.13636 6.16506 6.34635 6.45587 6.53811 6.61704 6.71580 6.73776 6.82865 6.92291 6.99916 7.17560 7.25777 7.53292 7.59809 7.60761 7.61836 7.69638 7.76687 7.85566 8.20507 8.30546 8.60266 8.80091 9.35270 9.67513 10.83672 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.006643 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.005140 B = 4214.114133 C = 5236.811992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.126 4.126 3 C 0.153 3.847 4 H 0.079 0.921 5 C -0.125 4.125 6 C 0.076 3.924 7 O -0.579 6.579 8 N -0.732 5.732 9 C 0.546 3.454 10 O -0.541 6.541 11 C 0.055 3.945 12 H 0.055 0.945 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.076 3.924 16 N -0.836 5.836 17 Si 0.883 3.117 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.012 4.012 22 C -0.058 4.058 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.100 4.100 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.122 0.878 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.376 0.624 37 H 0.395 0.605 38 H 0.265 0.735 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 3.698 2.982 7.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.164 4.164 3 C 0.047 3.953 4 H 0.097 0.903 5 C -0.163 4.163 6 C -0.001 4.001 7 O -0.384 6.384 8 N -0.385 5.385 9 C 0.335 3.665 10 O -0.418 6.418 11 C 0.034 3.966 12 H 0.073 0.927 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.132 4.132 16 N -0.469 5.469 17 Si 0.711 3.289 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.013 4.013 22 C -0.076 4.076 23 C -0.167 4.167 24 C -0.163 4.163 25 C -0.164 4.164 26 C -0.118 4.118 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.140 0.860 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.223 0.777 37 H 0.228 0.772 38 H 0.075 0.925 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.579 2.892 3.714 7.299 hybrid contribution 0.241 -0.633 -0.814 1.059 sum 5.820 2.260 2.900 6.884 Atomic orbital electron populations 1.22182 0.93746 0.99942 1.06556 1.21878 0.98352 0.95800 1.00416 1.20704 0.91531 0.93813 0.89207 0.90273 1.21806 0.95300 0.95854 1.03340 1.22219 0.80071 0.97819 1.00041 1.86452 1.21167 1.33828 1.96991 1.45964 1.18026 1.59620 1.14932 1.21030 0.79298 0.76897 0.89241 1.90562 1.50023 1.59772 1.41415 1.17896 0.91195 0.95094 0.92398 0.92745 1.20686 1.29980 1.03242 1.03652 0.91599 1.25003 0.94322 0.98138 0.95709 1.70033 1.21071 1.25926 1.29879 0.86716 0.77746 0.82363 0.82093 1.20532 1.21216 1.19766 1.19754 0.96582 0.92539 0.92419 1.21074 0.91506 0.95312 0.99673 1.20963 0.96976 1.00986 0.97774 1.20747 0.98201 1.02028 0.95330 1.20798 0.94638 1.02730 0.98253 1.20971 0.95884 0.97717 0.97237 0.95665 0.93641 0.86027 0.92578 0.93191 0.90604 0.90883 0.92972 0.93809 0.77741 0.77153 0.92503 0.85612 0.88226 0.88405 0.88307 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.52 8.51 37.16 0.32 -3.21 16 2 C -0.13 -2.20 5.61 -26.73 -0.15 -2.35 16 3 C 0.15 2.52 2.26 -67.93 -0.15 2.37 16 4 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.12 -1.69 5.12 -26.73 -0.14 -1.83 16 6 C 0.08 0.95 6.93 37.16 0.26 1.20 16 7 O -0.58 -6.91 13.66 -35.23 -0.48 -7.39 16 8 N -0.73 -13.42 4.38 -53.81 -0.24 -13.65 16 9 C 0.55 11.88 4.33 -10.99 -0.05 11.83 16 10 O -0.54 -13.16 11.07 5.56 0.06 -13.10 16 11 C 0.06 1.23 2.78 -94.08 -0.26 0.97 16 12 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.54 -12.53 7.10 -34.44 -0.24 -12.77 16 14 H 0.07 1.51 7.83 -52.49 -0.41 1.10 16 15 C 0.08 1.83 4.11 -17.82 -0.07 1.75 16 16 N -0.84 -21.40 8.75 55.43 0.48 -20.91 16 17 Si 0.88 19.40 29.54 -169.99 -5.02 14.37 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 C -0.01 -0.28 4.43 -104.62 -0.46 -0.74 16 22 C -0.06 -1.32 7.99 -39.58 -0.32 -1.63 16 23 C -0.15 -3.08 10.05 -39.58 -0.40 -3.48 16 24 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 25 C -0.15 -2.97 10.05 -39.58 -0.40 -3.36 16 26 C -0.10 -2.21 8.20 -39.58 -0.32 -2.53 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.98 7.85 -51.93 -0.41 0.57 16 29 H 0.12 2.90 3.40 -51.93 -0.18 2.73 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.65 7.75 -51.93 -0.40 0.25 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.38 2.74 9.12 45.56 0.42 3.15 16 37 H 0.39 6.74 8.49 -40.82 -0.35 6.39 16 38 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.13 2.97 6.11 -52.48 -0.32 2.65 16 40 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.11 2.33 6.88 -52.48 -0.36 1.97 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -28.18 340.72 -8.62 -36.79 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -5.77 Total: 15.77 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.79 Total: -17.03 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.25 Total: -34.56 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.42 Total: -20.48 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.18 -8.62 -36.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631671306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.828 kcal (2) G-P(sol) polarization free energy of solvation -28.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds