Wall clock time and date at job start Tue Mar 31 2020 07:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47272 * 2 1 4 4 H 1.09004 * 109.46725 * 55.00184 * 3 2 1 5 5 C 1.53000 * 109.47051 * 174.99852 * 3 2 1 6 6 C 1.53006 * 109.46968 * 185.00196 * 5 3 2 7 7 O 1.42902 * 109.46964 * 180.02562 * 6 5 3 8 8 N 1.46496 * 109.47045 * 295.00158 * 3 2 1 9 9 C 1.34778 * 120.00046 * 84.99930 * 8 3 2 10 10 O 1.21275 * 120.00087 * 359.97438 * 9 8 3 11 11 C 1.50696 * 119.99734 * 179.97438 * 9 8 3 12 12 H 1.09000 * 109.47492 * 299.99686 * 11 9 8 13 13 C 1.50702 * 109.47136 * 60.00352 * 11 9 8 14 14 H 1.07996 * 119.99806 * 236.43177 * 13 11 9 15 15 C 1.37877 * 120.00165 * 56.43681 * 13 11 9 16 16 N 1.31515 * 119.99675 * 7.72832 * 15 13 11 17 17 Si 1.86799 * 120.00044 * 187.73229 * 15 13 11 18 18 H 1.48499 * 109.47295 * 89.99764 * 17 15 13 19 19 H 1.48497 * 109.46969 * 209.99855 * 17 15 13 20 20 H 1.48504 * 109.47024 * 329.99473 * 17 15 13 21 21 C 1.50701 * 109.47054 * 180.02562 * 11 9 8 22 22 C 1.38236 * 120.00319 * 225.34250 * 21 11 9 23 23 C 1.38233 * 120.00088 * 179.78497 * 22 21 11 24 24 C 1.38234 * 120.00071 * 0.44137 * 23 22 21 25 25 C 1.38234 * 120.00092 * 359.81176 * 24 23 22 26 26 C 1.38232 * 120.00214 * 45.61043 * 21 11 9 27 27 H 1.08995 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47210 * 299.99699 * 1 2 3 29 29 H 1.08995 * 109.47047 * 60.00000 * 1 2 3 30 30 H 1.09001 * 109.47210 * 240.00301 * 2 1 3 31 31 H 1.09005 * 109.47170 * 120.00163 * 2 1 3 32 32 H 1.08998 * 109.47419 * 305.00011 * 5 3 2 33 33 H 1.08995 * 109.46794 * 65.00228 * 5 3 2 34 34 H 1.08998 * 109.46900 * 300.00133 * 6 5 3 35 35 H 1.08994 * 109.46860 * 60.00139 * 6 5 3 36 36 H 0.96696 * 113.99598 * 180.02562 * 7 6 5 37 37 H 0.97003 * 119.99842 * 264.99839 * 8 3 2 38 38 H 0.97003 * 119.99755 * 180.02562 * 16 15 13 39 39 H 1.08003 * 119.99598 * 359.97438 * 22 21 11 40 40 H 1.08006 * 119.99847 * 180.27240 * 23 22 21 41 41 H 1.07996 * 119.99676 * 179.83345 * 24 23 22 42 42 H 1.07997 * 120.00372 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.99965 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 6 4.0646 2.8850 0.2512 7 8 5.4888 2.8867 0.3681 8 7 1.6525 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3395 2.6319 -0.4344 11 6 0.0367 3.3386 -2.6544 12 1 0.7281 4.1542 -2.8666 13 6 0.0800 2.3375 -3.7800 14 1 0.6906 2.5292 -4.6499 15 6 -0.6600 1.1770 -3.6993 16 7 -1.5181 1.0114 -2.7166 17 14 -0.4436 -0.1601 -4.9857 18 1 0.6187 -1.1009 -4.5479 19 1 -1.7212 -0.8985 -5.1518 20 1 -0.0562 0.4564 -6.2800 21 6 -1.3608 3.8871 -2.5227 22 6 -2.2780 3.6932 -3.5386 23 6 -3.5611 4.1924 -3.4158 24 6 -3.9245 4.8934 -2.2811 25 6 -3.0058 5.0918 -1.2675 26 6 -1.7239 4.5887 -1.3884 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8571 0.8800 1.0113 33 1 4.0029 0.9836 -0.7596 34 1 3.7723 3.4493 -0.6344 35 1 3.6264 3.3457 1.1365 36 1 5.8754 3.7690 0.4519 37 1 2.2720 2.1231 -1.9977 38 1 -2.0385 0.1947 -2.6596 39 1 -1.9929 3.1491 -4.4269 40 1 -4.2790 4.0371 -4.2077 41 1 -4.9262 5.2857 -2.1865 42 1 -3.2897 5.6390 -0.3808 43 1 -1.0062 4.7436 -0.5964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631671306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:43 Heat of formation + Delta-G solvation = -91.065188 kcal Electronic energy + Delta-G solvation = -24619.652966 eV Core-core repulsion = 21242.548122 eV Total energy + Delta-G solvation = -3377.104843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89771 -39.41584 -38.03953 -36.56608 -35.40592 -33.09763 -32.32893 -31.74907 -31.27162 -28.91759 -26.63986 -25.53837 -22.96304 -22.71144 -22.56371 -21.42846 -20.89901 -18.65702 -18.23825 -17.33612 -17.28284 -16.80303 -16.54731 -15.96718 -15.78631 -15.47677 -15.24282 -14.90821 -14.46131 -14.32255 -14.11556 -13.83684 -13.60055 -13.55721 -13.31883 -12.97227 -12.77074 -12.63918 -12.52692 -12.32857 -12.18963 -11.89864 -11.81139 -11.72545 -11.61718 -11.29317 -11.09848 -10.86046 -10.47391 -10.02858 -9.49354 -9.29176 -9.02877 -7.99948 -6.17925 0.95177 1.00731 1.42261 1.48985 1.53324 2.38617 2.50814 2.84113 3.23770 3.24213 3.42588 4.04682 4.09576 4.22866 4.39332 4.39635 4.40713 4.44951 4.55350 4.59927 4.68082 4.75000 4.85261 4.86925 5.04012 5.06991 5.07753 5.11837 5.18192 5.19742 5.24300 5.42687 5.52864 5.61444 5.74021 5.95252 5.97802 6.03769 6.08144 6.10280 6.50452 6.60015 6.82264 6.90505 7.17754 7.48562 8.03009 8.95482 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.006643 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.005140 B = 4214.114133 C = 5236.811992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.121 4.121 3 C 0.158 3.842 4 H 0.066 0.934 5 C -0.116 4.116 6 C 0.080 3.920 7 O -0.590 6.590 8 N -0.723 5.723 9 C 0.548 3.452 10 O -0.570 6.570 11 C 0.047 3.953 12 H 0.065 0.935 13 C -0.533 4.533 14 H 0.067 0.933 15 C 0.048 3.952 16 N -0.855 5.855 17 Si 0.929 3.071 18 H -0.281 1.281 19 H -0.297 1.297 20 H -0.267 1.267 21 C -0.030 4.030 22 C -0.078 4.078 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.115 4.115 27 H 0.025 0.975 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.397 0.603 37 H 0.402 0.598 38 H 0.254 0.746 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 4.046 3.178 8.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.160 4.160 3 C 0.052 3.948 4 H 0.084 0.916 5 C -0.153 4.153 6 C 0.003 3.997 7 O -0.399 6.399 8 N -0.375 5.375 9 C 0.337 3.663 10 O -0.449 6.449 11 C 0.025 3.975 12 H 0.083 0.917 13 C -0.571 4.571 14 H 0.085 0.915 15 C -0.157 4.157 16 N -0.489 5.489 17 Si 0.757 3.243 18 H -0.207 1.207 19 H -0.224 1.224 20 H -0.191 1.191 21 C -0.031 4.031 22 C -0.096 4.096 23 C -0.173 4.173 24 C -0.161 4.161 25 C -0.167 4.167 26 C -0.134 4.134 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.246 0.754 37 H 0.236 0.764 38 H 0.063 0.937 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.362 3.257 3.892 8.138 hybrid contribution 0.011 -0.683 -0.866 1.103 sum 6.373 2.574 3.026 7.510 Atomic orbital electron populations 1.22125 0.96433 0.99347 1.04650 1.21846 0.95804 0.96734 1.01600 1.20723 0.93642 0.92710 0.87683 0.91604 1.21680 0.92609 0.97019 1.04037 1.22085 0.80614 0.96891 1.00144 1.86393 1.20598 1.35906 1.96971 1.45862 1.17047 1.58731 1.15886 1.20866 0.79900 0.76896 0.88606 1.90540 1.51138 1.60967 1.42239 1.17998 0.91583 0.95309 0.92578 0.91747 1.20819 1.29212 1.03212 1.03820 0.91492 1.25404 0.94249 0.99431 0.96662 1.70182 1.21971 1.25561 1.31219 0.85996 0.76850 0.80556 0.80900 1.20679 1.22397 1.19133 1.19887 0.97007 0.93237 0.93010 1.21043 0.92763 0.96467 0.99353 1.21264 0.96553 1.00509 0.98925 1.21121 0.99614 1.01033 0.94362 1.21154 0.93954 1.02203 0.99396 1.21040 0.96899 0.98479 0.96939 0.95594 0.95105 0.88367 0.92780 0.90477 0.89317 0.90641 0.93237 0.93440 0.75371 0.76365 0.93651 0.87240 0.86069 0.84936 0.85661 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.13 8.51 71.98 0.61 -6.52 16 2 C -0.12 -4.11 5.61 30.59 0.17 -3.94 16 3 C 0.16 5.03 2.26 44.99 0.10 5.13 16 4 H 0.07 2.32 7.58 -2.38 -0.02 2.30 16 5 C -0.12 -2.88 5.12 30.60 0.16 -2.72 16 6 C 0.08 1.84 6.93 71.98 0.50 2.34 16 7 O -0.59 -12.60 13.66 -148.98 -2.04 -14.64 16 8 N -0.72 -26.14 4.38 -442.54 -1.94 -28.08 16 9 C 0.55 24.01 4.33 87.66 0.38 24.39 16 10 O -0.57 -28.18 11.07 -3.01 -0.03 -28.21 16 11 C 0.05 2.09 2.78 -13.03 -0.04 2.05 16 12 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.53 -24.87 7.10 25.60 0.18 -24.69 16 14 H 0.07 3.05 7.83 -2.91 -0.02 3.03 16 15 C 0.05 2.30 4.11 84.65 0.35 2.65 16 16 N -0.86 -44.53 8.75 21.45 0.19 -44.34 16 17 Si 0.93 39.95 29.54 68.60 2.03 41.98 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.30 -13.25 7.11 99.48 0.71 -12.55 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 C -0.03 -1.41 4.43 -19.87 -0.09 -1.50 16 22 C -0.08 -3.58 7.99 22.27 0.18 -3.40 16 23 C -0.15 -6.24 10.05 22.27 0.22 -6.01 16 24 C -0.14 -5.34 10.05 22.27 0.22 -5.12 16 25 C -0.15 -5.84 10.05 22.27 0.22 -5.61 16 26 C -0.12 -5.10 8.20 22.27 0.18 -4.92 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16 29 H 0.10 4.75 3.40 -2.39 -0.01 4.74 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.15 7.75 -2.39 -0.02 1.13 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.40 4.78 9.12 -74.06 -0.68 4.10 16 37 H 0.40 13.36 8.49 -92.71 -0.79 12.57 16 38 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 39 H 0.11 5.27 6.11 -2.91 -0.02 5.26 16 40 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 41 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 42 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.10 4.49 6.88 -2.91 -0.02 4.47 16 Total: -1.00 -60.16 340.72 1.12 -59.04 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -0.44 Total: 42.13 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 3.36 Total: -27.87 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -1.75 Total: -72.42 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -2.07 Total: -42.85 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -60.16 1.12 -59.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631671306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.029 kcal (2) G-P(sol) polarization free energy of solvation -60.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds