Wall clock time and date at job start Tue Mar 31 2020 07:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46943 * 2 1 4 4 H 1.09001 * 109.47359 * 305.00014 * 3 2 1 5 5 C 1.53001 * 109.46923 * 184.99629 * 3 2 1 6 6 C 1.53001 * 109.46782 * 175.00088 * 5 3 2 7 7 O 1.42903 * 109.47296 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.46964 * 65.00137 * 3 2 1 9 9 C 1.34782 * 119.99629 * 274.99542 * 8 3 2 10 10 O 1.21279 * 119.99893 * 0.02562 * 9 8 3 11 11 C 1.50697 * 120.00048 * 180.02562 * 9 8 3 12 12 H 1.09002 * 109.47271 * 300.00527 * 11 9 8 13 13 C 1.50699 * 109.47217 * 60.00150 * 11 9 8 14 14 H 1.08007 * 119.99926 * 35.05284 * 13 11 9 15 15 C 1.37878 * 120.00678 * 215.05701 * 13 11 9 16 16 N 1.31520 * 119.99366 * 5.10833 * 15 13 11 17 17 Si 1.86793 * 120.00404 * 185.10673 * 15 13 11 18 18 H 1.48501 * 109.46865 * 60.00112 * 17 15 13 19 19 H 1.48498 * 109.47245 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47328 * 300.00088 * 17 15 13 21 21 C 1.50697 * 109.47508 * 180.02562 * 11 9 8 22 22 C 1.38234 * 120.00362 * 113.75391 * 21 11 9 23 23 C 1.38228 * 120.00198 * 179.97438 * 22 21 11 24 24 C 1.38238 * 120.00095 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99757 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99520 * 293.77923 * 21 11 9 27 27 H 1.08999 * 109.46702 * 60.00192 * 1 2 3 28 28 H 1.09003 * 109.46666 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47442 * 300.00058 * 1 2 3 30 30 H 1.08998 * 109.47882 * 240.00016 * 2 1 3 31 31 H 1.09000 * 109.47220 * 119.99879 * 2 1 3 32 32 H 1.09001 * 109.47271 * 294.99868 * 5 3 2 33 33 H 1.09000 * 109.47081 * 55.00692 * 5 3 2 34 34 H 1.08997 * 109.47466 * 300.00178 * 6 5 3 35 35 H 1.08999 * 109.47221 * 60.00089 * 6 5 3 36 36 H 0.96693 * 114.00696 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00714 * 95.00366 * 8 3 2 38 38 H 0.96997 * 119.99551 * 180.02562 * 16 15 13 39 39 H 1.08006 * 119.99876 * 359.97438 * 22 21 11 40 40 H 1.08004 * 120.00210 * 179.97438 * 23 22 21 41 41 H 1.07995 * 120.00072 * 179.72498 * 24 23 22 42 42 H 1.08007 * 119.99926 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.00334 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 6 4.0644 2.8851 -0.2510 7 8 5.4885 2.8869 -0.3690 8 7 1.6524 2.0975 1.2518 9 6 0.4350 2.6644 1.3669 10 8 -0.3396 2.6319 0.4343 11 6 0.0365 3.3386 2.6544 12 1 0.0678 2.6146 3.4686 13 6 0.9923 4.4661 2.9478 14 1 1.4068 5.0475 2.1374 15 6 1.3379 4.7556 4.2508 16 7 0.9139 3.9865 5.2298 17 14 2.4081 6.2400 4.6256 18 1 1.7282 7.4725 4.1525 19 1 2.6333 6.3307 6.0906 20 1 3.7132 6.0972 3.9316 21 6 -1.3615 3.8859 2.5231 22 6 -2.3857 3.3560 3.2854 23 6 -3.6678 3.8584 3.1653 24 6 -3.9257 4.8911 2.2833 25 6 -2.9013 5.4217 1.5218 26 6 -1.6196 4.9175 1.6399 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0029 0.9837 0.7598 33 1 3.8571 0.8801 -1.0113 34 1 3.6263 3.3458 -1.1363 35 1 3.7721 3.4494 0.6345 36 1 5.8753 3.7692 -0.4520 37 1 2.2718 2.1232 1.9978 38 1 1.1567 4.1904 6.1465 39 1 -2.1841 2.5495 3.9748 40 1 -4.4681 3.4442 3.7606 41 1 -4.9283 5.2807 2.1862 42 1 -3.1029 6.2283 0.8323 43 1 -0.8195 5.3315 1.0443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631671307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:47 Heat of formation + Delta-G solvation = -85.390030 kcal Electronic energy + Delta-G solvation = -24031.669050 eV Core-core repulsion = 20654.810300 eV Total energy + Delta-G solvation = -3376.858750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.46747 -38.08730 -36.94261 -35.40171 -33.66494 -31.67222 -31.01931 -30.65126 -29.95003 -27.35874 -25.40460 -23.88627 -21.67822 -21.62636 -21.34503 -20.16135 -19.32125 -17.31469 -16.82214 -16.06774 -15.98012 -15.63193 -14.79193 -14.72574 -14.51312 -14.14263 -13.84871 -13.67035 -13.27035 -12.85712 -12.69128 -12.45325 -12.36940 -12.19473 -11.74359 -11.59546 -11.43882 -11.22917 -11.07029 -11.02049 -10.85681 -10.72108 -10.46933 -10.40502 -10.28640 -9.98377 -9.84950 -9.46057 -8.78514 -8.55965 -8.24889 -7.95785 -7.62238 -6.29937 -4.35399 2.36129 2.39292 3.17868 3.24425 3.26111 3.74438 4.05583 4.20715 4.26365 4.82021 5.07229 5.13236 5.15766 5.28195 5.47074 5.55517 5.65741 5.70913 5.77407 5.81942 5.88576 5.93899 6.08270 6.11327 6.20542 6.26141 6.27564 6.35920 6.47676 6.55985 6.60089 6.81658 6.87101 6.96583 7.17102 7.29698 7.35692 7.43762 7.59664 7.67004 7.74884 7.94634 8.06391 8.42719 8.68708 9.26884 9.32371 10.78580 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.006899 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.926293 B = 4057.333499 C = 5715.565396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.147 3.853 4 H 0.083 0.917 5 C -0.123 4.123 6 C 0.072 3.928 7 O -0.580 6.580 8 N -0.725 5.725 9 C 0.529 3.471 10 O -0.563 6.563 11 C 0.047 3.953 12 H 0.091 0.909 13 C -0.514 4.514 14 H 0.060 0.940 15 C 0.075 3.925 16 N -0.879 5.879 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.010 4.010 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.149 4.149 25 C -0.134 4.134 26 C -0.084 4.084 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.378 0.622 37 H 0.404 0.596 38 H 0.268 0.732 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -3.269 -6.654 7.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.041 3.959 4 H 0.101 0.899 5 C -0.161 4.161 6 C -0.005 4.005 7 O -0.385 6.385 8 N -0.378 5.378 9 C 0.319 3.681 10 O -0.442 6.442 11 C 0.026 3.974 12 H 0.109 0.891 13 C -0.552 4.552 14 H 0.078 0.922 15 C -0.130 4.130 16 N -0.515 5.515 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.011 4.011 22 C -0.139 4.139 23 C -0.150 4.150 24 C -0.167 4.167 25 C -0.153 4.153 26 C -0.102 4.102 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.224 0.776 37 H 0.239 0.761 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.271 -3.970 -7.060 8.199 hybrid contribution 0.893 1.545 0.712 1.921 sum 2.164 -2.426 -6.348 7.132 Atomic orbital electron populations 1.21783 0.94730 0.99870 1.03625 1.21922 0.97260 0.96207 1.01490 1.20809 0.92406 0.93389 0.89248 0.89893 1.21770 0.94706 0.96291 1.03379 1.22239 0.80177 0.97553 1.00552 1.86409 1.21119 1.33968 1.97026 1.46038 1.17885 1.58345 1.15525 1.21516 0.80137 0.75654 0.90785 1.90586 1.51673 1.59996 1.41898 1.18135 0.90188 0.97332 0.91704 0.89120 1.20612 1.26350 1.15663 0.92526 0.92167 1.24953 0.95474 0.96306 0.96253 1.69867 1.44512 1.37022 1.00066 0.86578 0.80548 0.83155 0.77372 1.19962 1.21094 1.20024 1.20057 0.95017 0.93712 0.92342 1.20996 0.92447 1.00405 1.00023 1.20899 0.96584 0.97982 0.99511 1.20794 0.98127 0.98768 0.99020 1.20957 0.93717 1.00375 1.00208 1.20813 0.95496 0.96089 0.97842 0.92418 0.94290 0.91736 0.91982 0.92048 0.90761 0.90502 0.93897 0.92223 0.77573 0.76061 0.92259 0.87064 0.87594 0.87750 0.87653 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.51 37.16 0.32 -1.95 16 2 C -0.13 -1.79 5.61 -26.73 -0.15 -1.94 16 3 C 0.15 2.18 2.26 -67.93 -0.15 2.03 16 4 H 0.08 1.36 7.58 -51.93 -0.39 0.96 16 5 C -0.12 -1.60 5.12 -26.73 -0.14 -1.74 16 6 C 0.07 0.97 6.93 37.16 0.26 1.23 16 7 O -0.58 -7.54 13.66 -35.23 -0.48 -8.02 16 8 N -0.73 -12.71 4.38 -53.80 -0.24 -12.95 16 9 C 0.53 11.08 5.61 -10.98 -0.06 11.02 16 10 O -0.56 -12.67 12.56 5.56 0.07 -12.60 16 11 C 0.05 1.09 2.45 -94.08 -0.23 0.86 16 12 H 0.09 2.24 6.99 -51.93 -0.36 1.88 16 13 C -0.51 -12.47 7.46 -34.44 -0.26 -12.72 16 14 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 15 C 0.08 1.87 5.45 -17.82 -0.10 1.77 16 16 N -0.88 -22.82 12.77 55.43 0.71 -22.11 16 17 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 C -0.01 -0.23 4.30 -104.63 -0.45 -0.68 16 22 C -0.12 -2.60 9.67 -39.59 -0.38 -2.98 16 23 C -0.13 -2.52 10.05 -39.59 -0.40 -2.92 16 24 C -0.15 -2.75 10.05 -39.58 -0.40 -3.14 16 25 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 26 C -0.08 -1.86 8.32 -39.58 -0.33 -2.19 16 27 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.20 5.64 -51.93 -0.29 0.91 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 36 H 0.38 3.34 9.12 45.56 0.42 3.75 16 37 H 0.40 7.02 8.49 -40.82 -0.35 6.68 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.11 2.32 7.96 -52.48 -0.42 1.90 16 40 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 41 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.11 2.46 7.89 -52.49 -0.41 2.04 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -28.29 354.48 -8.46 -36.75 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -5.97 Total: 15.30 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.87 Total: -16.37 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.47 Total: -35.06 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.41 Total: -20.62 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.29 -8.46 -36.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631671307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.641 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds