Wall clock time and date at job start Tue Mar 31 2020 07:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46943 * 2 1 4 4 H 1.09001 * 109.47359 * 305.00014 * 3 2 1 5 5 C 1.53001 * 109.46923 * 184.99629 * 3 2 1 6 6 C 1.53001 * 109.46782 * 175.00088 * 5 3 2 7 7 O 1.42903 * 109.47296 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.46964 * 65.00137 * 3 2 1 9 9 C 1.34782 * 119.99629 * 274.99542 * 8 3 2 10 10 O 1.21279 * 119.99893 * 0.02562 * 9 8 3 11 11 C 1.50697 * 120.00048 * 180.02562 * 9 8 3 12 12 H 1.09002 * 109.47271 * 300.00527 * 11 9 8 13 13 C 1.50699 * 109.47217 * 60.00150 * 11 9 8 14 14 H 1.08007 * 119.99926 * 35.05284 * 13 11 9 15 15 C 1.37878 * 120.00678 * 215.05701 * 13 11 9 16 16 N 1.31520 * 119.99366 * 5.10833 * 15 13 11 17 17 Si 1.86793 * 120.00404 * 185.10673 * 15 13 11 18 18 H 1.48501 * 109.46865 * 60.00112 * 17 15 13 19 19 H 1.48498 * 109.47245 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47328 * 300.00088 * 17 15 13 21 21 C 1.50697 * 109.47508 * 180.02562 * 11 9 8 22 22 C 1.38234 * 120.00362 * 113.75391 * 21 11 9 23 23 C 1.38228 * 120.00198 * 179.97438 * 22 21 11 24 24 C 1.38238 * 120.00095 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99757 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99520 * 293.77923 * 21 11 9 27 27 H 1.08999 * 109.46702 * 60.00192 * 1 2 3 28 28 H 1.09003 * 109.46666 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47442 * 300.00058 * 1 2 3 30 30 H 1.08998 * 109.47882 * 240.00016 * 2 1 3 31 31 H 1.09000 * 109.47220 * 119.99879 * 2 1 3 32 32 H 1.09001 * 109.47271 * 294.99868 * 5 3 2 33 33 H 1.09000 * 109.47081 * 55.00692 * 5 3 2 34 34 H 1.08997 * 109.47466 * 300.00178 * 6 5 3 35 35 H 1.08999 * 109.47221 * 60.00089 * 6 5 3 36 36 H 0.96693 * 114.00696 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00714 * 95.00366 * 8 3 2 38 38 H 0.96997 * 119.99551 * 180.02562 * 16 15 13 39 39 H 1.08006 * 119.99876 * 359.97438 * 22 21 11 40 40 H 1.08004 * 120.00210 * 179.97438 * 23 22 21 41 41 H 1.07995 * 120.00072 * 179.72498 * 24 23 22 42 42 H 1.08007 * 119.99926 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.00334 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 6 4.0644 2.8851 -0.2510 7 8 5.4885 2.8869 -0.3690 8 7 1.6524 2.0975 1.2518 9 6 0.4350 2.6644 1.3669 10 8 -0.3396 2.6319 0.4343 11 6 0.0365 3.3386 2.6544 12 1 0.0678 2.6146 3.4686 13 6 0.9923 4.4661 2.9478 14 1 1.4068 5.0475 2.1374 15 6 1.3379 4.7556 4.2508 16 7 0.9139 3.9865 5.2298 17 14 2.4081 6.2400 4.6256 18 1 1.7282 7.4725 4.1525 19 1 2.6333 6.3307 6.0906 20 1 3.7132 6.0972 3.9316 21 6 -1.3615 3.8859 2.5231 22 6 -2.3857 3.3560 3.2854 23 6 -3.6678 3.8584 3.1653 24 6 -3.9257 4.8911 2.2833 25 6 -2.9013 5.4217 1.5218 26 6 -1.6196 4.9175 1.6399 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0029 0.9837 0.7598 33 1 3.8571 0.8801 -1.0113 34 1 3.6263 3.3458 -1.1363 35 1 3.7721 3.4494 0.6345 36 1 5.8753 3.7692 -0.4520 37 1 2.2718 2.1232 1.9978 38 1 1.1567 4.1904 6.1465 39 1 -2.1841 2.5495 3.9748 40 1 -4.4681 3.4442 3.7606 41 1 -4.9283 5.2807 2.1862 42 1 -3.1029 6.2283 0.8323 43 1 -0.8195 5.3315 1.0443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631671307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:46 Heat of formation + Delta-G solvation = -103.065927 kcal Electronic energy + Delta-G solvation = -24032.435534 eV Core-core repulsion = 20654.810300 eV Total energy + Delta-G solvation = -3377.625235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03657 -39.59138 -38.14380 -36.69214 -35.48979 -33.19393 -32.64110 -31.85173 -31.53442 -29.04728 -26.70318 -25.66530 -23.23309 -22.86204 -22.75388 -21.50243 -20.93664 -18.66621 -18.40358 -17.66857 -17.48435 -17.08610 -16.34932 -16.13618 -15.91990 -15.59157 -15.46040 -14.92750 -14.61678 -14.40025 -14.22095 -13.98712 -13.86000 -13.51198 -13.34090 -13.20708 -12.85928 -12.77261 -12.70144 -12.40581 -12.16778 -12.03661 -11.95888 -11.89155 -11.69770 -11.62506 -11.25565 -10.90225 -10.67991 -10.28536 -9.72416 -9.55543 -9.25257 -8.20869 -6.30885 0.75413 0.80827 1.41547 1.44595 1.50234 2.06383 2.43311 2.60914 3.08999 3.19119 3.28183 4.00687 4.02821 4.17641 4.22767 4.29944 4.30536 4.37199 4.42644 4.51441 4.54557 4.59388 4.72400 4.80460 4.88499 4.97924 5.00796 5.04283 5.08469 5.13217 5.15248 5.29807 5.38112 5.46116 5.51748 5.64600 5.78511 5.81226 5.87132 5.97426 6.24981 6.40907 6.74454 6.83354 6.87366 7.35760 7.67009 8.87147 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.006899 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.926293 B = 4057.333499 C = 5715.565396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.148 3.852 4 H 0.068 0.932 5 C -0.115 4.115 6 C 0.075 3.925 7 O -0.589 6.589 8 N -0.716 5.716 9 C 0.531 3.469 10 O -0.581 6.581 11 C 0.049 3.951 12 H 0.064 0.936 13 C -0.512 4.512 14 H 0.053 0.947 15 C 0.035 3.965 16 N -0.907 5.907 17 Si 0.949 3.051 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.263 1.263 21 C -0.037 4.037 22 C -0.145 4.145 23 C -0.129 4.129 24 C -0.144 4.144 25 C -0.135 4.135 26 C -0.109 4.109 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.395 0.605 37 H 0.405 0.595 38 H 0.266 0.734 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.135 0.865 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -3.153 -7.558 8.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C 0.043 3.957 4 H 0.087 0.913 5 C -0.153 4.153 6 C -0.003 4.003 7 O -0.397 6.397 8 N -0.367 5.367 9 C 0.320 3.680 10 O -0.462 6.462 11 C 0.028 3.972 12 H 0.082 0.918 13 C -0.550 4.550 14 H 0.071 0.929 15 C -0.167 4.167 16 N -0.544 5.544 17 Si 0.775 3.225 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.038 4.038 22 C -0.163 4.163 23 C -0.147 4.147 24 C -0.162 4.162 25 C -0.153 4.153 26 C -0.127 4.127 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.244 0.756 37 H 0.240 0.760 38 H 0.076 0.924 39 H 0.123 0.877 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.153 0.847 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.242 -3.857 -7.980 8.950 hybrid contribution 0.860 1.497 0.944 1.968 sum 2.102 -2.360 -7.036 7.713 Atomic orbital electron populations 1.21707 0.96379 1.00327 1.01196 1.21906 0.95619 0.95501 1.03305 1.20959 0.93909 0.93694 0.87114 0.91340 1.21699 0.92752 0.96340 1.04470 1.22142 0.80704 0.97640 0.99804 1.86363 1.20582 1.35764 1.96950 1.45974 1.16610 1.57501 1.16597 1.21130 0.81036 0.75931 0.89859 1.90560 1.52483 1.60964 1.42173 1.18022 0.90781 0.96547 0.91893 0.91754 1.20695 1.26245 1.15705 0.92329 0.92891 1.25563 0.96663 0.98342 0.96142 1.69976 1.45894 1.38371 1.00162 0.85740 0.79588 0.80099 0.77077 1.20466 1.21065 1.18776 1.20152 0.95248 0.94766 0.93667 1.21135 0.93708 1.01062 1.00406 1.21290 0.96188 0.97724 0.99525 1.21262 0.99678 0.97732 0.97497 1.21329 0.92786 1.00687 1.00473 1.20841 0.96674 0.96782 0.98407 0.93790 0.92358 0.95149 0.88914 0.91330 0.90462 0.88385 0.93506 0.94248 0.75550 0.76024 0.92447 0.87745 0.84386 0.83633 0.84722 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.51 71.98 0.61 -3.76 16 2 C -0.12 -3.26 5.61 30.60 0.17 -3.09 16 3 C 0.15 4.31 2.26 44.99 0.10 4.41 16 4 H 0.07 2.23 7.58 -2.39 -0.02 2.22 16 5 C -0.11 -2.79 5.12 30.59 0.16 -2.63 16 6 C 0.07 1.95 6.93 71.98 0.50 2.44 16 7 O -0.59 -14.30 13.66 -148.98 -2.04 -16.33 16 8 N -0.72 -25.72 4.38 -442.53 -1.94 -27.66 16 9 C 0.53 23.20 5.61 87.66 0.49 23.69 16 10 O -0.58 -27.16 12.56 -3.03 -0.04 -27.19 16 11 C 0.05 2.36 2.45 -13.03 -0.03 2.33 16 12 H 0.06 3.39 6.99 -2.39 -0.02 3.38 16 13 C -0.51 -25.68 7.46 25.60 0.19 -25.49 16 14 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 15 C 0.03 1.76 5.45 84.65 0.46 2.22 16 16 N -0.91 -48.46 12.77 21.45 0.27 -48.18 16 17 Si 0.95 40.75 29.54 68.60 2.03 42.78 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 C -0.04 -1.77 4.30 -19.87 -0.09 -1.86 16 22 C -0.14 -6.38 9.67 22.27 0.22 -6.16 16 23 C -0.13 -4.76 10.05 22.27 0.22 -4.53 16 24 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 25 C -0.13 -5.07 10.05 22.27 0.22 -4.84 16 26 C -0.11 -4.89 8.32 22.27 0.19 -4.70 16 27 H 0.04 1.47 7.85 -2.39 -0.02 1.46 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 1.15 5.64 -2.39 -0.01 1.14 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.04 1.17 7.75 -2.39 -0.02 1.15 16 36 H 0.40 6.33 9.12 -74.06 -0.68 5.66 16 37 H 0.40 14.47 8.49 -92.71 -0.79 13.68 16 38 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 39 H 0.10 4.58 7.96 -2.91 -0.02 4.56 16 40 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 42 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 43 H 0.10 4.46 7.89 -2.91 -0.02 4.43 16 Total: -1.00 -62.27 354.48 1.48 -60.79 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: -0.45 Total: 42.46 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.64 Total: -26.67 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.67 Total: -75.84 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -2.07 Total: -43.53 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -62.27 1.48 -60.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631671307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.277 kcal (2) G-P(sol) polarization free energy of solvation -62.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds