Wall clock time and date at job start Tue Mar 31 2020 07:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47128 * 2 1 4 4 H 1.09002 * 109.47014 * 54.99706 * 3 2 1 5 5 C 1.52996 * 109.47509 * 174.99821 * 3 2 1 6 6 C 1.53002 * 109.47388 * 185.00037 * 5 3 2 7 7 O 1.42901 * 109.47054 * 180.02562 * 6 5 3 8 8 N 1.46505 * 109.47205 * 295.00319 * 3 2 1 9 9 C 1.34772 * 120.00338 * 84.99323 * 8 3 2 10 10 O 1.21275 * 120.00084 * 0.02562 * 9 8 3 11 11 C 1.50702 * 119.99658 * 180.27774 * 9 8 3 12 12 H 1.08995 * 109.47348 * 59.73038 * 11 9 8 13 13 C 1.50697 * 109.47085 * 299.72557 * 11 9 8 14 14 H 1.07998 * 120.00268 * 325.10207 * 13 11 9 15 15 C 1.37881 * 120.00012 * 145.10462 * 13 11 9 16 16 N 1.31511 * 120.00402 * 184.98532 * 15 13 11 17 17 Si 1.86800 * 119.99716 * 4.97960 * 15 13 11 18 18 H 1.48500 * 109.47201 * 84.67482 * 17 15 13 19 19 H 1.48499 * 109.47016 * 204.67419 * 17 15 13 20 20 H 1.48503 * 109.47419 * 324.67335 * 17 15 13 21 21 C 1.50705 * 109.46646 * 179.72957 * 11 9 8 22 22 C 1.38233 * 120.00345 * 65.02334 * 21 11 9 23 23 C 1.38233 * 120.00002 * 179.78693 * 22 21 11 24 24 C 1.38232 * 120.00099 * 0.44087 * 23 22 21 25 25 C 1.38238 * 119.99950 * 359.81119 * 24 23 22 26 26 C 1.38235 * 119.99872 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46336 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47099 * 299.99814 * 1 2 3 29 29 H 1.09000 * 109.46924 * 60.00466 * 1 2 3 30 30 H 1.08999 * 109.47208 * 239.99454 * 2 1 3 31 31 H 1.09000 * 109.46763 * 120.00064 * 2 1 3 32 32 H 1.09001 * 109.46937 * 305.00037 * 5 3 2 33 33 H 1.09000 * 109.46905 * 64.99794 * 5 3 2 34 34 H 1.09000 * 109.46565 * 299.99825 * 6 5 3 35 35 H 1.08995 * 109.46859 * 59.99939 * 6 5 3 36 36 H 0.96700 * 114.00047 * 180.02562 * 7 6 5 37 37 H 0.97005 * 119.99043 * 265.00308 * 8 3 2 38 38 H 0.97000 * 120.00164 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.99892 * 359.97438 * 22 21 11 40 40 H 1.08000 * 119.99833 * 180.26912 * 23 22 21 41 41 H 1.08002 * 120.00342 * 179.83455 * 24 23 22 42 42 H 1.08001 * 120.00234 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.00110 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 6 4.0645 2.8851 0.2512 7 8 5.4887 2.8868 0.3680 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6643 -1.3670 10 8 -0.3393 2.6325 -0.4342 11 6 0.0342 3.3326 -2.6569 12 1 0.0682 2.6059 -3.4685 13 6 0.9859 4.4625 -2.9541 14 1 1.4001 5.0466 -2.1456 15 6 1.3279 4.7508 -4.2584 16 7 2.2323 5.6710 -4.5131 17 14 0.5067 3.8342 -5.6636 18 1 -0.7815 4.4927 -5.9985 19 1 1.3957 3.8522 -6.8529 20 1 0.2529 2.4287 -5.2567 21 6 -1.3656 3.8758 -2.5271 22 6 -1.6319 4.8929 -1.6297 23 6 -2.9150 5.3940 -1.5139 24 6 -3.9335 4.8719 -2.2890 25 6 -3.6682 3.8512 -3.1828 26 6 -2.3843 3.3531 -3.3017 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.8571 0.8801 1.0114 33 1 4.0030 0.9836 -0.7596 34 1 3.7722 3.4493 -0.6345 35 1 3.6263 3.3458 1.1365 36 1 5.8754 3.7692 0.4518 37 1 2.2720 2.1231 -1.9978 38 1 2.4731 5.8735 -5.4306 39 1 -0.8370 5.2980 -1.0212 40 1 -3.1222 6.1917 -0.8159 41 1 -4.9365 5.2616 -2.1967 42 1 -4.4639 3.4435 -3.7887 43 1 -2.1770 2.5553 -3.9997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631671308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:51 Heat of formation + Delta-G solvation = -81.141257 kcal Electronic energy + Delta-G solvation = -24104.685458 eV Core-core repulsion = 20728.010948 eV Total energy + Delta-G solvation = -3376.674510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.62999 -38.25272 -36.94490 -35.45473 -33.67387 -31.81457 -31.37498 -30.68867 -30.13213 -27.73675 -25.45218 -23.61928 -21.89570 -21.67193 -21.48475 -20.23329 -19.35283 -17.29742 -17.14736 -16.30662 -16.15076 -15.69761 -14.91015 -14.76915 -14.52968 -14.24089 -13.88135 -13.57716 -13.36042 -13.09067 -12.73624 -12.58813 -12.57048 -12.33102 -12.10140 -11.83813 -11.58366 -11.32072 -11.08813 -11.01120 -10.87072 -10.76190 -10.55115 -10.45841 -10.23475 -9.92659 -9.79070 -9.53908 -8.96599 -8.67981 -8.35310 -8.13139 -7.80854 -6.33158 -4.36987 2.15400 2.21850 3.13395 3.21388 3.26170 3.60705 3.93762 4.20042 4.23704 4.63909 4.98837 5.12785 5.14276 5.27356 5.41640 5.53661 5.55235 5.59813 5.67012 5.71733 5.79616 5.90485 5.94787 6.02845 6.09402 6.17627 6.21937 6.26052 6.29643 6.32892 6.46493 6.48245 6.73898 6.74674 6.85302 7.15864 7.17865 7.25286 7.28433 7.58933 7.73358 7.79917 8.17794 8.31636 8.66532 9.14336 9.25448 10.77727 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.006508 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.539738 B = 4301.552834 C = 5414.979236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.147 3.853 4 H 0.085 0.915 5 C -0.123 4.123 6 C 0.072 3.928 7 O -0.580 6.580 8 N -0.724 5.724 9 C 0.537 3.463 10 O -0.556 6.556 11 C 0.017 3.983 12 H 0.072 0.928 13 C -0.509 4.509 14 H 0.081 0.919 15 C 0.085 3.915 16 N -0.883 5.883 17 Si 0.866 3.134 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.026 4.026 22 C -0.072 4.072 23 C -0.129 4.129 24 C -0.144 4.144 25 C -0.128 4.128 26 C -0.137 4.137 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.379 0.621 37 H 0.404 0.596 38 H 0.269 0.731 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -6.831 5.647 8.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.042 3.958 4 H 0.103 0.897 5 C -0.161 4.161 6 C -0.006 4.006 7 O -0.386 6.386 8 N -0.376 5.376 9 C 0.326 3.674 10 O -0.434 6.434 11 C -0.005 4.005 12 H 0.089 0.911 13 C -0.547 4.547 14 H 0.099 0.901 15 C -0.120 4.120 16 N -0.519 5.519 17 Si 0.693 3.307 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.027 4.027 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.162 4.162 25 C -0.147 4.147 26 C -0.156 4.156 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.226 0.774 37 H 0.240 0.760 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.779 -7.385 6.116 9.753 hybrid contribution -0.027 0.365 -1.268 1.320 sum -1.807 -7.021 4.849 8.721 Atomic orbital electron populations 1.21790 0.94787 0.99911 1.03571 1.21930 0.97187 0.96199 1.01610 1.20832 0.92674 0.93292 0.88995 0.89717 1.21766 0.94464 0.96527 1.03381 1.22233 0.80268 0.97319 1.00743 1.86389 1.21053 1.34109 1.97038 1.45998 1.17655 1.58177 1.15797 1.21007 0.80383 0.75657 0.90332 1.90599 1.51710 1.59544 1.41592 1.18596 0.91464 0.97434 0.92974 0.91073 1.20506 1.25076 1.14895 0.94173 0.90084 1.24974 0.93861 0.94690 0.98425 1.69853 1.29879 1.31504 1.20617 0.87025 0.80461 0.81004 0.82229 1.19214 1.21171 1.18714 1.20074 0.94656 0.94516 0.93439 1.20822 0.95680 0.95343 0.97204 1.21026 0.93575 1.00214 0.99914 1.20854 0.98398 0.98521 0.98405 1.20879 0.96320 0.98041 0.99410 1.20970 0.93036 1.00651 1.00904 0.94232 0.92293 0.91928 0.92059 0.91792 0.90457 0.90777 0.91953 0.93934 0.77418 0.76046 0.92126 0.86590 0.87194 0.87380 0.87327 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.52 37.16 0.32 -1.85 16 2 C -0.13 -1.73 5.61 -26.73 -0.15 -1.88 16 3 C 0.15 2.14 2.26 -67.93 -0.15 1.99 16 4 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.12 -1.60 5.12 -26.73 -0.14 -1.73 16 6 C 0.07 1.00 6.93 37.16 0.26 1.26 16 7 O -0.58 -7.86 13.66 -35.23 -0.48 -8.34 16 8 N -0.72 -12.41 4.38 -53.81 -0.24 -12.64 16 9 C 0.54 10.92 5.60 -10.99 -0.06 10.86 16 10 O -0.56 -12.12 12.51 5.56 0.07 -12.05 16 11 C 0.02 0.37 1.89 -94.07 -0.18 0.19 16 12 H 0.07 1.56 4.89 -51.93 -0.25 1.30 16 13 C -0.51 -12.64 8.07 -34.44 -0.28 -12.91 16 14 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 15 C 0.09 2.21 5.47 -17.82 -0.10 2.11 16 16 N -0.88 -24.42 13.96 55.43 0.77 -23.65 16 17 Si 0.87 19.73 27.18 -169.99 -4.62 15.11 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.26 -5.56 6.06 56.52 0.34 -5.21 16 21 C -0.03 -0.56 4.09 -104.62 -0.43 -0.99 16 22 C -0.07 -1.55 8.25 -39.58 -0.33 -1.87 16 23 C -0.13 -2.41 10.05 -39.59 -0.40 -2.81 16 24 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16 25 C -0.13 -2.31 10.05 -39.58 -0.40 -2.70 16 26 C -0.14 -2.77 9.46 -39.58 -0.37 -3.14 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.95 7.85 -51.93 -0.41 0.54 16 29 H 0.06 1.11 5.65 -51.93 -0.29 0.81 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.38 3.63 9.12 45.56 0.42 4.04 16 37 H 0.40 6.82 8.49 -40.82 -0.35 6.47 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.12 2.56 7.93 -52.48 -0.42 2.14 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.11 2.01 7.95 -52.48 -0.42 1.59 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -29.35 349.98 -7.96 -37.31 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -5.94 Total: 15.37 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.80 Total: -16.38 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.54 Total: -36.29 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.41 Total: -20.39 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.62 Total: 15.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.35 -7.96 -37.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631671308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.832 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds