Wall clock time and date at job start Tue Mar 31 2020 07:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47128 * 2 1 4 4 H 1.09002 * 109.47014 * 54.99706 * 3 2 1 5 5 C 1.52996 * 109.47509 * 174.99821 * 3 2 1 6 6 C 1.53002 * 109.47388 * 185.00037 * 5 3 2 7 7 O 1.42901 * 109.47054 * 180.02562 * 6 5 3 8 8 N 1.46505 * 109.47205 * 295.00319 * 3 2 1 9 9 C 1.34772 * 120.00338 * 84.99323 * 8 3 2 10 10 O 1.21275 * 120.00084 * 0.02562 * 9 8 3 11 11 C 1.50702 * 119.99658 * 180.27774 * 9 8 3 12 12 H 1.08995 * 109.47348 * 59.73038 * 11 9 8 13 13 C 1.50697 * 109.47085 * 299.72557 * 11 9 8 14 14 H 1.07998 * 120.00268 * 325.10207 * 13 11 9 15 15 C 1.37881 * 120.00012 * 145.10462 * 13 11 9 16 16 N 1.31511 * 120.00402 * 184.98532 * 15 13 11 17 17 Si 1.86800 * 119.99716 * 4.97960 * 15 13 11 18 18 H 1.48500 * 109.47201 * 84.67482 * 17 15 13 19 19 H 1.48499 * 109.47016 * 204.67419 * 17 15 13 20 20 H 1.48503 * 109.47419 * 324.67335 * 17 15 13 21 21 C 1.50705 * 109.46646 * 179.72957 * 11 9 8 22 22 C 1.38233 * 120.00345 * 65.02334 * 21 11 9 23 23 C 1.38233 * 120.00002 * 179.78693 * 22 21 11 24 24 C 1.38232 * 120.00099 * 0.44087 * 23 22 21 25 25 C 1.38238 * 119.99950 * 359.81119 * 24 23 22 26 26 C 1.38235 * 119.99872 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46336 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47099 * 299.99814 * 1 2 3 29 29 H 1.09000 * 109.46924 * 60.00466 * 1 2 3 30 30 H 1.08999 * 109.47208 * 239.99454 * 2 1 3 31 31 H 1.09000 * 109.46763 * 120.00064 * 2 1 3 32 32 H 1.09001 * 109.46937 * 305.00037 * 5 3 2 33 33 H 1.09000 * 109.46905 * 64.99794 * 5 3 2 34 34 H 1.09000 * 109.46565 * 299.99825 * 6 5 3 35 35 H 1.08995 * 109.46859 * 59.99939 * 6 5 3 36 36 H 0.96700 * 114.00047 * 180.02562 * 7 6 5 37 37 H 0.97005 * 119.99043 * 265.00308 * 8 3 2 38 38 H 0.97000 * 120.00164 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.99892 * 359.97438 * 22 21 11 40 40 H 1.08000 * 119.99833 * 180.26912 * 23 22 21 41 41 H 1.08002 * 120.00342 * 179.83455 * 24 23 22 42 42 H 1.08001 * 120.00234 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.00110 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 6 4.0645 2.8851 0.2512 7 8 5.4887 2.8868 0.3680 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6643 -1.3670 10 8 -0.3393 2.6325 -0.4342 11 6 0.0342 3.3326 -2.6569 12 1 0.0682 2.6059 -3.4685 13 6 0.9859 4.4625 -2.9541 14 1 1.4001 5.0466 -2.1456 15 6 1.3279 4.7508 -4.2584 16 7 2.2323 5.6710 -4.5131 17 14 0.5067 3.8342 -5.6636 18 1 -0.7815 4.4927 -5.9985 19 1 1.3957 3.8522 -6.8529 20 1 0.2529 2.4287 -5.2567 21 6 -1.3656 3.8758 -2.5271 22 6 -1.6319 4.8929 -1.6297 23 6 -2.9150 5.3940 -1.5139 24 6 -3.9335 4.8719 -2.2890 25 6 -3.6682 3.8512 -3.1828 26 6 -2.3843 3.3531 -3.3017 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.8571 0.8801 1.0114 33 1 4.0030 0.9836 -0.7596 34 1 3.7722 3.4493 -0.6345 35 1 3.6263 3.3458 1.1365 36 1 5.8754 3.7692 0.4518 37 1 2.2720 2.1231 -1.9978 38 1 2.4731 5.8735 -5.4306 39 1 -0.8370 5.2980 -1.0212 40 1 -3.1222 6.1917 -0.8159 41 1 -4.9365 5.2616 -2.1967 42 1 -4.4639 3.4435 -3.7887 43 1 -2.1770 2.5553 -3.9997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631671308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:50 Heat of formation + Delta-G solvation = -100.806630 kcal Electronic energy + Delta-G solvation = -24105.538213 eV Core-core repulsion = 20728.010948 eV Total energy + Delta-G solvation = -3377.527264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15845 -39.68698 -38.17548 -36.72786 -35.50184 -33.47386 -32.85149 -31.87864 -31.61967 -29.38205 -26.72750 -25.41834 -23.39757 -22.92870 -22.77547 -21.52607 -20.92749 -19.10986 -18.43713 -17.85576 -17.58189 -17.09883 -16.45570 -16.17161 -15.90213 -15.67433 -15.38916 -14.90195 -14.83891 -14.56612 -14.30716 -14.09242 -14.00429 -13.70245 -13.56877 -13.34067 -12.96668 -12.73112 -12.71604 -12.38514 -12.05277 -12.03310 -11.96130 -11.90820 -11.70621 -11.61596 -11.35921 -10.92235 -10.87233 -10.40527 -9.78297 -9.63232 -9.35296 -8.34292 -6.40868 0.65071 0.71740 1.31449 1.38804 1.42295 1.98320 2.29425 2.52612 2.97785 3.16601 3.18096 3.98688 4.01019 4.10147 4.16705 4.22656 4.29709 4.30020 4.37851 4.39712 4.46965 4.54702 4.62542 4.68271 4.78891 4.83096 4.91189 5.00795 5.03335 5.08221 5.12495 5.21229 5.28867 5.33095 5.41672 5.51840 5.70405 5.74258 5.80636 5.95553 6.21493 6.31320 6.61233 6.78432 6.80427 7.24027 7.56687 8.79914 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.006508 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.539738 B = 4301.552834 C = 5414.979236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.148 3.852 4 H 0.067 0.933 5 C -0.114 4.114 6 C 0.075 3.925 7 O -0.588 6.588 8 N -0.716 5.716 9 C 0.536 3.464 10 O -0.574 6.574 11 C 0.019 3.981 12 H 0.074 0.926 13 C -0.494 4.494 14 H 0.040 0.960 15 C 0.038 3.962 16 N -0.929 5.929 17 Si 0.918 3.082 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.236 1.236 21 C -0.053 4.053 22 C -0.102 4.102 23 C -0.133 4.133 24 C -0.138 4.138 25 C -0.125 4.125 26 C -0.154 4.154 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.395 0.605 37 H 0.405 0.595 38 H 0.269 0.731 39 H 0.090 0.910 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 -8.781 5.453 10.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.043 3.957 4 H 0.086 0.914 5 C -0.152 4.152 6 C -0.003 4.003 7 O -0.396 6.396 8 N -0.367 5.367 9 C 0.325 3.675 10 O -0.454 6.454 11 C -0.003 4.003 12 H 0.092 0.908 13 C -0.532 4.532 14 H 0.058 0.942 15 C -0.163 4.163 16 N -0.567 5.567 17 Si 0.743 3.257 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.159 1.159 21 C -0.054 4.054 22 C -0.120 4.120 23 C -0.151 4.151 24 C -0.156 4.156 25 C -0.143 4.143 26 C -0.172 4.172 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.244 0.756 37 H 0.241 0.759 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.283 -9.354 5.943 11.559 hybrid contribution 0.421 1.039 -1.086 1.561 sum -2.862 -8.315 4.857 10.046 Atomic orbital electron populations 1.21722 0.96214 1.00475 1.01296 1.21902 0.95741 0.95071 1.03538 1.20985 0.93866 0.93928 0.86912 0.91443 1.21706 0.92851 0.95983 1.04648 1.22138 0.80755 0.97874 0.99540 1.86346 1.20550 1.35752 1.96937 1.45981 1.16481 1.57416 1.16849 1.20729 0.81243 0.75957 0.89613 1.90578 1.52521 1.60449 1.41819 1.18526 0.91474 0.96334 0.93951 0.90780 1.20431 1.24942 1.14895 0.92929 0.94209 1.25646 0.94332 0.95532 1.00750 1.69980 1.31935 1.33726 1.21072 0.86170 0.79081 0.81273 0.79211 1.19598 1.21058 1.15940 1.20099 0.94925 0.95474 0.94883 1.20808 0.96609 0.96566 0.98042 1.21346 0.92736 1.00563 1.00451 1.21328 0.99720 0.97605 0.96905 1.21346 0.96256 0.97465 0.99248 1.21222 0.93750 1.01295 1.00952 0.92178 0.93908 0.94832 0.90928 0.88927 0.88213 0.90221 0.94759 0.93733 0.75585 0.75935 0.92174 0.89173 0.84873 0.83367 0.83614 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.52 71.98 0.61 -3.47 16 2 C -0.12 -3.03 5.61 30.60 0.17 -2.85 16 3 C 0.15 4.21 2.26 44.99 0.10 4.31 16 4 H 0.07 2.19 7.58 -2.39 -0.02 2.17 16 5 C -0.11 -2.80 5.12 30.59 0.16 -2.64 16 6 C 0.07 2.09 6.93 71.98 0.50 2.59 16 7 O -0.59 -15.49 13.66 -148.98 -2.04 -17.52 16 8 N -0.72 -25.01 4.38 -442.55 -1.94 -26.95 16 9 C 0.54 22.49 5.60 87.66 0.49 22.98 16 10 O -0.57 -25.83 12.51 -3.01 -0.04 -25.87 16 11 C 0.02 0.84 1.89 -13.03 -0.02 0.81 16 12 H 0.07 3.22 4.89 -2.39 -0.01 3.21 16 13 C -0.49 -25.68 8.07 25.60 0.21 -25.47 16 14 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 15 C 0.04 2.01 5.47 84.66 0.46 2.47 16 16 N -0.93 -53.40 13.96 21.45 0.30 -53.10 16 17 Si 0.92 40.63 27.18 68.60 1.86 42.49 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.24 -9.32 6.06 99.48 0.60 -8.72 16 21 C -0.05 -2.33 4.09 -19.86 -0.08 -2.41 16 22 C -0.10 -4.47 8.25 22.27 0.18 -4.29 16 23 C -0.13 -4.81 10.05 22.27 0.22 -4.59 16 24 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 25 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 26 C -0.15 -5.97 9.46 22.27 0.21 -5.76 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.36 7.85 -2.39 -0.02 1.34 16 29 H 0.03 1.16 5.65 -2.39 -0.01 1.15 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.03 1.14 7.75 -2.39 -0.02 1.12 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.39 7.39 9.12 -74.06 -0.68 6.72 16 37 H 0.41 13.94 8.49 -92.70 -0.79 13.15 16 38 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.09 4.28 7.93 -2.91 -0.02 4.26 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 42 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 43 H 0.12 4.18 7.95 -2.91 -0.02 4.16 16 Total: -1.00 -65.91 349.98 1.26 -64.65 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -0.55 Total: 42.60 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 3.66 Total: -26.31 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.64 Total: -80.05 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -2.07 Total: -43.39 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.86 Total: 42.49 kcal Total: -65.91 1.26 -64.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631671308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.159 kcal (2) G-P(sol) polarization free energy of solvation -65.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds