Wall clock time and date at job start Tue Mar 31 2020 07:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47003 * 2 1 4 4 H 1.09002 * 109.46780 * 306.17340 * 3 2 1 5 5 C 1.53000 * 109.46950 * 186.17627 * 3 2 1 6 6 C 1.52996 * 109.47110 * 174.99736 * 5 3 2 7 7 O 1.42899 * 109.47292 * 180.02562 * 6 5 3 8 8 N 1.46496 * 109.47407 * 66.17300 * 3 2 1 9 9 C 1.34774 * 120.00501 * 258.92490 * 8 3 2 10 10 O 1.21288 * 119.99649 * 354.89986 * 9 8 3 11 11 C 1.50695 * 120.00313 * 174.90576 * 9 8 3 12 12 H 1.08999 * 109.47421 * 47.56002 * 11 9 8 13 13 C 1.50699 * 109.47034 * 287.56354 * 11 9 8 14 14 H 1.08000 * 120.00220 * 334.72244 * 13 11 9 15 15 C 1.37881 * 120.00312 * 154.72358 * 13 11 9 16 16 N 1.31510 * 120.00532 * 185.68519 * 15 13 11 17 17 Si 1.86806 * 119.99538 * 5.68984 * 15 13 11 18 18 H 1.48504 * 109.47313 * 87.23639 * 17 15 13 19 19 H 1.48502 * 109.46730 * 207.23280 * 17 15 13 20 20 H 1.48495 * 109.47148 * 327.23436 * 17 15 13 21 21 C 1.50700 * 109.47121 * 167.56391 * 11 9 8 22 22 C 1.38230 * 119.99940 * 67.68544 * 21 11 9 23 23 C 1.38239 * 119.99579 * 179.81196 * 22 21 11 24 24 C 1.38227 * 120.00316 * 0.39031 * 23 22 21 25 25 C 1.38238 * 119.99980 * 359.85852 * 24 23 22 26 26 C 1.38233 * 119.99921 * 359.95920 * 25 24 23 27 27 H 1.09003 * 109.46987 * 186.41696 * 1 2 3 28 28 H 1.08993 * 109.47150 * 66.40991 * 1 2 3 29 29 H 1.09006 * 109.46750 * 306.41281 * 1 2 3 30 30 H 1.08994 * 109.47168 * 119.99885 * 2 1 3 31 31 H 1.08997 * 109.47003 * 239.99685 * 2 1 3 32 32 H 1.09001 * 109.47081 * 294.99634 * 5 3 2 33 33 H 1.08998 * 109.47036 * 55.00068 * 5 3 2 34 34 H 1.09005 * 109.47277 * 300.00379 * 6 5 3 35 35 H 1.09006 * 109.47036 * 59.99917 * 6 5 3 36 36 H 0.96704 * 113.99834 * 180.02562 * 7 6 5 37 37 H 0.97005 * 119.99433 * 78.91884 * 8 3 2 38 38 H 0.96995 * 120.00603 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.00060 * 359.97438 * 22 21 11 40 40 H 1.08003 * 119.99666 * 180.23081 * 23 22 21 41 41 H 1.08001 * 120.00201 * 179.83682 * 24 23 22 42 42 H 1.08001 * 120.00443 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99788 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5892 1.9872 -0.8296 5 6 3.5621 1.4453 -0.1552 6 6 4.0594 2.8868 -0.2805 7 8 5.4809 2.8894 -0.4260 8 7 1.6768 2.0890 1.2634 9 6 0.6207 2.9248 1.3136 10 8 0.0277 3.2144 0.2960 11 6 0.1768 3.4998 2.6340 12 1 1.0428 3.8862 3.1715 13 6 -0.4838 2.4222 3.4544 14 1 -0.9408 1.5747 2.9652 15 6 -0.5049 2.5180 4.8297 16 7 -0.9808 1.5266 5.5509 17 14 0.1425 4.0565 5.6687 18 1 -0.9473 5.0601 5.7715 19 1 0.6275 3.7114 7.0292 20 1 1.2616 4.6208 4.8724 21 6 -0.8036 4.6181 2.3907 22 6 -2.0519 4.3409 1.8656 23 6 -2.9526 5.3663 1.6461 24 6 -2.6021 6.6698 1.9442 25 6 -1.3518 6.9476 2.4645 26 6 -0.4525 5.9218 2.6875 27 1 -0.3633 -1.0213 0.1149 28 1 -0.3633 0.4112 -0.9417 29 1 -0.3633 0.6101 0.8271 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 4.0173 0.9786 0.7184 33 1 3.8371 0.8871 -1.0501 34 1 3.6042 3.3536 -1.1540 35 1 3.7843 3.4451 0.6145 36 1 5.8660 3.7724 -0.5106 37 1 2.1963 1.9153 2.0640 38 1 -0.9953 1.5939 6.5184 39 1 -2.3244 3.3229 1.6293 40 1 -3.9292 5.1493 1.2393 41 1 -3.3048 7.4712 1.7702 42 1 -1.0778 7.9661 2.6970 43 1 0.5244 6.1390 3.0936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631671309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:53 Heat of formation + Delta-G solvation = -82.056939 kcal Electronic energy + Delta-G solvation = -24059.079658 eV Core-core repulsion = 20682.365441 eV Total energy + Delta-G solvation = -3376.714217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.60495 -38.26883 -37.07265 -35.59684 -33.62978 -31.78764 -31.37564 -30.77772 -30.13472 -27.74589 -25.51499 -23.61965 -21.87432 -21.72098 -21.47643 -20.33360 -19.41188 -17.43961 -17.11007 -16.39093 -16.14287 -15.67359 -14.89355 -14.78118 -14.43568 -14.31454 -13.96093 -13.67446 -13.38986 -12.94103 -12.87318 -12.67931 -12.53015 -12.37127 -12.06837 -11.89128 -11.64788 -11.25350 -11.17232 -10.96849 -10.84433 -10.78354 -10.53142 -10.47295 -10.24834 -9.99134 -9.90989 -9.54085 -8.92988 -8.70388 -8.42645 -8.13411 -7.82240 -6.29278 -4.33218 2.13414 2.21094 3.16751 3.24501 3.30005 3.55357 3.90574 4.10126 4.23824 4.63460 5.01142 5.03742 5.09760 5.19422 5.44964 5.46261 5.53756 5.57782 5.60451 5.70101 5.75177 5.89879 5.92875 5.96342 6.03793 6.15883 6.23079 6.28625 6.30203 6.32851 6.47063 6.52221 6.74259 6.79338 6.85984 7.11536 7.16081 7.26167 7.30314 7.54226 7.60702 7.79987 8.16838 8.28813 8.71310 9.08806 9.28921 10.81476 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.005978 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.766323 B = 4682.712011 C = 5109.657585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.142 3.858 4 H 0.094 0.906 5 C -0.126 4.126 6 C 0.076 3.924 7 O -0.579 6.579 8 N -0.726 5.726 9 C 0.542 3.458 10 O -0.557 6.557 11 C 0.022 3.978 12 H 0.065 0.935 13 C -0.508 4.508 14 H 0.082 0.918 15 C 0.087 3.913 16 N -0.883 5.883 17 Si 0.866 3.134 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.262 1.262 21 C -0.035 4.035 22 C -0.065 4.065 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.131 4.131 26 C -0.140 4.140 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.377 0.623 37 H 0.401 0.599 38 H 0.268 0.732 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 3.600 -8.309 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.037 3.963 4 H 0.113 0.887 5 C -0.164 4.164 6 C -0.002 4.002 7 O -0.384 6.384 8 N -0.378 5.378 9 C 0.331 3.669 10 O -0.435 6.435 11 C 0.000 4.000 12 H 0.083 0.917 13 C -0.545 4.545 14 H 0.100 0.900 15 C -0.118 4.118 16 N -0.519 5.519 17 Si 0.693 3.307 18 H -0.193 1.193 19 H -0.213 1.213 20 H -0.187 1.187 21 C -0.036 4.036 22 C -0.083 4.083 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.149 4.149 26 C -0.158 4.158 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.224 0.776 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.073 3.064 -8.795 11.119 hybrid contribution 0.490 1.283 1.096 1.757 sum 6.563 4.347 -7.700 11.012 Atomic orbital electron populations 1.21717 0.94965 1.01254 1.02692 1.21868 0.97181 0.95897 1.01794 1.20875 0.92578 0.93893 0.88975 0.88750 1.21828 0.95118 0.96016 1.03427 1.22195 0.80258 0.97712 1.00035 1.86438 1.21361 1.33849 1.96752 1.45965 1.32612 1.47744 1.11444 1.20949 0.78074 0.76752 0.91144 1.90590 1.55076 1.61160 1.36665 1.18546 0.95439 0.94036 0.91983 0.91699 1.20450 1.38129 1.05464 0.90442 0.90000 1.24918 0.94196 0.95629 0.97081 1.69859 1.44930 1.30746 1.06337 0.87029 0.80393 0.84332 0.78970 1.19297 1.21344 1.18653 1.20157 0.95915 0.93295 0.94252 1.20884 0.92694 0.98852 0.95840 1.21063 0.99241 0.93157 1.01509 1.20870 0.96627 0.96377 1.02102 1.20877 0.94562 0.98170 1.01326 1.21021 0.99244 0.92945 1.02577 0.93390 0.93184 0.91257 0.91610 0.91844 0.90787 0.90368 0.93724 0.93151 0.77635 0.76433 0.92175 0.86190 0.87110 0.87356 0.87330 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.78 37.16 0.36 -2.03 16 2 C -0.13 -1.77 5.60 -26.73 -0.15 -1.92 16 3 C 0.14 2.03 2.26 -67.93 -0.15 1.88 16 4 H 0.09 1.50 7.08 -51.93 -0.37 1.13 16 5 C -0.13 -1.53 5.22 -26.73 -0.14 -1.67 16 6 C 0.08 0.92 6.93 37.16 0.26 1.18 16 7 O -0.58 -6.78 13.66 -35.23 -0.48 -7.26 16 8 N -0.73 -12.12 4.11 -53.81 -0.22 -12.34 16 9 C 0.54 10.99 5.64 -10.99 -0.06 10.93 16 10 O -0.56 -12.37 14.71 5.55 0.08 -12.29 16 11 C 0.02 0.47 1.87 -94.08 -0.18 0.30 16 12 H 0.07 1.40 5.46 -51.93 -0.28 1.11 16 13 C -0.51 -12.84 8.16 -34.44 -0.28 -13.12 16 14 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16 15 C 0.09 2.28 5.47 -17.82 -0.10 2.19 16 16 N -0.88 -24.95 13.96 55.43 0.77 -24.18 16 17 Si 0.87 20.11 26.06 -169.99 -4.43 15.68 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.26 -5.60 6.06 56.52 0.34 -5.26 16 21 C -0.04 -0.77 3.65 -104.62 -0.38 -1.15 16 22 C -0.06 -1.40 8.14 -39.58 -0.32 -1.72 16 23 C -0.13 -2.49 10.05 -39.59 -0.40 -2.88 16 24 C -0.14 -2.48 10.05 -39.59 -0.40 -2.88 16 25 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 26 C -0.14 -2.81 8.65 -39.58 -0.34 -3.15 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.36 6.57 -51.93 -0.34 1.02 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.65 7.75 -51.93 -0.40 0.24 16 36 H 0.38 2.76 9.12 45.56 0.42 3.18 16 37 H 0.40 6.34 8.77 -40.82 -0.36 5.98 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 39 H 0.12 2.72 7.84 -52.49 -0.41 2.31 16 40 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.11 2.01 7.96 -52.49 -0.42 1.59 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -30.32 352.37 -7.66 -37.98 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.01 Total: 13.90 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.68 Total: -16.80 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.55 Total: -36.52 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.40 Total: -19.55 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.43 Total: 15.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.32 -7.66 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631671309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.079 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds