Wall clock time and date at job start Tue Mar 31 2020 07:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47003 * 2 1 4 4 H 1.09002 * 109.46780 * 306.17340 * 3 2 1 5 5 C 1.53000 * 109.46950 * 186.17627 * 3 2 1 6 6 C 1.52996 * 109.47110 * 174.99736 * 5 3 2 7 7 O 1.42899 * 109.47292 * 180.02562 * 6 5 3 8 8 N 1.46496 * 109.47407 * 66.17300 * 3 2 1 9 9 C 1.34774 * 120.00501 * 258.92490 * 8 3 2 10 10 O 1.21288 * 119.99649 * 354.89986 * 9 8 3 11 11 C 1.50695 * 120.00313 * 174.90576 * 9 8 3 12 12 H 1.08999 * 109.47421 * 47.56002 * 11 9 8 13 13 C 1.50699 * 109.47034 * 287.56354 * 11 9 8 14 14 H 1.08000 * 120.00220 * 334.72244 * 13 11 9 15 15 C 1.37881 * 120.00312 * 154.72358 * 13 11 9 16 16 N 1.31510 * 120.00532 * 185.68519 * 15 13 11 17 17 Si 1.86806 * 119.99538 * 5.68984 * 15 13 11 18 18 H 1.48504 * 109.47313 * 87.23639 * 17 15 13 19 19 H 1.48502 * 109.46730 * 207.23280 * 17 15 13 20 20 H 1.48495 * 109.47148 * 327.23436 * 17 15 13 21 21 C 1.50700 * 109.47121 * 167.56391 * 11 9 8 22 22 C 1.38230 * 119.99940 * 67.68544 * 21 11 9 23 23 C 1.38239 * 119.99579 * 179.81196 * 22 21 11 24 24 C 1.38227 * 120.00316 * 0.39031 * 23 22 21 25 25 C 1.38238 * 119.99980 * 359.85852 * 24 23 22 26 26 C 1.38233 * 119.99921 * 359.95920 * 25 24 23 27 27 H 1.09003 * 109.46987 * 186.41696 * 1 2 3 28 28 H 1.08993 * 109.47150 * 66.40991 * 1 2 3 29 29 H 1.09006 * 109.46750 * 306.41281 * 1 2 3 30 30 H 1.08994 * 109.47168 * 119.99885 * 2 1 3 31 31 H 1.08997 * 109.47003 * 239.99685 * 2 1 3 32 32 H 1.09001 * 109.47081 * 294.99634 * 5 3 2 33 33 H 1.08998 * 109.47036 * 55.00068 * 5 3 2 34 34 H 1.09005 * 109.47277 * 300.00379 * 6 5 3 35 35 H 1.09006 * 109.47036 * 59.99917 * 6 5 3 36 36 H 0.96704 * 113.99834 * 180.02562 * 7 6 5 37 37 H 0.97005 * 119.99433 * 78.91884 * 8 3 2 38 38 H 0.96995 * 120.00603 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.00060 * 359.97438 * 22 21 11 40 40 H 1.08003 * 119.99666 * 180.23081 * 23 22 21 41 41 H 1.08001 * 120.00201 * 179.83682 * 24 23 22 42 42 H 1.08001 * 120.00443 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99788 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5892 1.9872 -0.8296 5 6 3.5621 1.4453 -0.1552 6 6 4.0594 2.8868 -0.2805 7 8 5.4809 2.8894 -0.4260 8 7 1.6768 2.0890 1.2634 9 6 0.6207 2.9248 1.3136 10 8 0.0277 3.2144 0.2960 11 6 0.1768 3.4998 2.6340 12 1 1.0428 3.8862 3.1715 13 6 -0.4838 2.4222 3.4544 14 1 -0.9408 1.5747 2.9652 15 6 -0.5049 2.5180 4.8297 16 7 -0.9808 1.5266 5.5509 17 14 0.1425 4.0565 5.6687 18 1 -0.9473 5.0601 5.7715 19 1 0.6275 3.7114 7.0292 20 1 1.2616 4.6208 4.8724 21 6 -0.8036 4.6181 2.3907 22 6 -2.0519 4.3409 1.8656 23 6 -2.9526 5.3663 1.6461 24 6 -2.6021 6.6698 1.9442 25 6 -1.3518 6.9476 2.4645 26 6 -0.4525 5.9218 2.6875 27 1 -0.3633 -1.0213 0.1149 28 1 -0.3633 0.4112 -0.9417 29 1 -0.3633 0.6101 0.8271 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 4.0173 0.9786 0.7184 33 1 3.8371 0.8871 -1.0501 34 1 3.6042 3.3536 -1.1540 35 1 3.7843 3.4451 0.6145 36 1 5.8660 3.7724 -0.5106 37 1 2.1963 1.9153 2.0640 38 1 -0.9953 1.5939 6.5184 39 1 -2.3244 3.3229 1.6293 40 1 -3.9292 5.1493 1.2393 41 1 -3.3048 7.4712 1.7702 42 1 -1.0778 7.9661 2.6970 43 1 0.5244 6.1390 3.0936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631671309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:53 Heat of formation + Delta-G solvation = -103.042876 kcal Electronic energy + Delta-G solvation = -24059.989676 eV Core-core repulsion = 20682.365441 eV Total energy + Delta-G solvation = -3377.624235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.13671 -39.69112 -38.18666 -36.81522 -35.48248 -33.47334 -32.89870 -31.90245 -31.62807 -29.39271 -26.77313 -25.43212 -23.38210 -22.91213 -22.79486 -21.62559 -20.98943 -19.08103 -18.38999 -17.94427 -17.57058 -17.06749 -16.40997 -16.07402 -15.84700 -15.73828 -15.41959 -14.98761 -14.79621 -14.57000 -14.33610 -14.22480 -14.05093 -13.75567 -13.46289 -13.41857 -12.99018 -12.75749 -12.70815 -12.41577 -12.08102 -12.02183 -11.98784 -11.95375 -11.71885 -11.59215 -11.40275 -10.92076 -10.85444 -10.45968 -9.84540 -9.64070 -9.37250 -8.33896 -6.40748 0.62911 0.70329 1.31450 1.39459 1.42950 1.93225 2.30155 2.50617 2.98793 3.14960 3.18384 3.99660 4.02742 4.10509 4.14732 4.22001 4.27722 4.29538 4.34705 4.40254 4.42878 4.52702 4.61938 4.67568 4.77858 4.81532 4.91628 4.96422 5.00781 5.05321 5.11847 5.20678 5.27465 5.33080 5.41213 5.42975 5.68717 5.73687 5.77893 5.96457 6.21432 6.30182 6.62627 6.76059 6.84681 7.23816 7.52373 8.80500 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.005978 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.766323 B = 4682.712011 C = 5109.657585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.144 3.856 4 H 0.079 0.921 5 C -0.117 4.117 6 C 0.078 3.922 7 O -0.589 6.589 8 N -0.716 5.716 9 C 0.542 3.458 10 O -0.580 6.580 11 C 0.023 3.977 12 H 0.074 0.926 13 C -0.493 4.493 14 H 0.037 0.963 15 C 0.036 3.964 16 N -0.932 5.932 17 Si 0.920 3.080 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.230 1.230 21 C -0.061 4.061 22 C -0.096 4.096 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.154 4.154 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.396 0.604 37 H 0.406 0.594 38 H 0.268 0.732 39 H 0.089 0.911 40 H 0.132 0.868 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 5.913 -8.980 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.040 3.960 4 H 0.098 0.902 5 C -0.155 4.155 6 C 0.000 4.000 7 O -0.397 6.397 8 N -0.366 5.366 9 C 0.330 3.670 10 O -0.460 6.460 11 C 0.001 3.999 12 H 0.091 0.909 13 C -0.531 4.531 14 H 0.055 0.945 15 C -0.164 4.164 16 N -0.570 5.570 17 Si 0.744 3.256 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.153 1.153 21 C -0.062 4.062 22 C -0.114 4.114 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.145 4.145 26 C -0.172 4.172 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.245 0.755 37 H 0.241 0.759 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.150 0.850 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.656 5.379 -9.490 13.327 hybrid contribution -0.055 0.546 1.191 1.311 sum 7.601 5.925 -8.299 12.719 Atomic orbital electron populations 1.21667 0.97065 1.00920 1.00687 1.21869 0.95119 0.95801 1.03463 1.20988 0.94351 0.93659 0.87038 0.90240 1.21735 0.92810 0.96522 1.04443 1.22095 0.80771 0.97441 0.99653 1.86388 1.20813 1.35782 1.96698 1.45914 1.31378 1.46607 1.12739 1.20679 0.78732 0.77309 0.90266 1.90564 1.56061 1.62280 1.37131 1.18473 0.95556 0.93423 0.92406 0.90864 1.20404 1.37071 1.04985 0.90657 0.94467 1.25635 0.94708 0.98336 0.97698 1.69993 1.47421 1.33050 1.06571 0.86145 0.80607 0.80613 0.78200 1.19949 1.21282 1.15289 1.20158 0.95821 0.94242 0.96018 1.20830 0.94060 0.98399 0.98121 1.21367 0.99635 0.93418 1.01037 1.21345 0.97270 0.96486 1.00240 1.21366 0.94044 0.99478 0.99614 1.21284 1.00605 0.92506 1.02790 0.92310 0.93370 0.95592 0.91379 0.88586 0.90310 0.88634 0.93705 0.94038 0.75451 0.75865 0.92229 0.89300 0.84982 0.83315 0.83415 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 9.78 71.98 0.70 -4.15 16 2 C -0.12 -3.32 5.60 30.60 0.17 -3.14 16 3 C 0.14 4.05 2.26 44.99 0.10 4.15 16 4 H 0.08 2.52 7.08 -2.39 -0.02 2.51 16 5 C -0.12 -2.62 5.22 30.59 0.16 -2.46 16 6 C 0.08 1.77 6.93 71.98 0.50 2.27 16 7 O -0.59 -12.41 13.66 -148.98 -2.04 -14.45 16 8 N -0.72 -24.20 4.11 -442.53 -1.82 -26.02 16 9 C 0.54 22.67 5.64 87.66 0.49 23.16 16 10 O -0.58 -26.75 14.71 -3.05 -0.04 -26.79 16 11 C 0.02 1.03 1.87 -13.03 -0.02 1.01 16 12 H 0.07 3.10 5.46 -2.39 -0.01 3.09 16 13 C -0.49 -26.22 8.16 25.60 0.21 -26.01 16 14 H 0.04 2.26 8.05 -2.91 -0.02 2.24 16 15 C 0.04 1.97 5.47 84.66 0.46 2.43 16 16 N -0.93 -54.91 13.96 21.45 0.30 -54.61 16 17 Si 0.92 41.32 26.06 68.60 1.79 43.11 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.23 -9.02 6.06 99.48 0.60 -8.42 16 21 C -0.06 -2.71 3.65 -19.87 -0.07 -2.78 16 22 C -0.10 -4.28 8.14 22.27 0.18 -4.10 16 23 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16 24 C -0.14 -4.28 10.05 22.27 0.22 -4.05 16 25 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 26 C -0.15 -5.84 8.65 22.27 0.19 -5.65 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.02 1.07 6.57 -2.38 -0.02 1.05 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.04 1.01 7.75 -2.38 -0.02 0.99 16 36 H 0.40 4.87 9.12 -74.05 -0.68 4.19 16 37 H 0.41 12.86 8.77 -92.70 -0.81 12.05 16 38 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.09 4.39 7.84 -2.91 -0.02 4.36 16 40 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 43 H 0.12 4.19 7.96 -2.91 -0.02 4.17 16 Total: -1.00 -68.93 352.37 1.36 -67.57 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -0.58 Total: 39.18 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 3.75 Total: -27.99 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.52 Total: -80.63 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -2.08 Total: -41.24 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.79 Total: 43.11 kcal Total: -68.93 1.36 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631671309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.471 kcal (2) G-P(sol) polarization free energy of solvation -68.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds