Wall clock time and date at job start Tue Mar 31 2020 06:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34708 * 116.99762 * 2 1 4 4 O 1.21475 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.47727 * 119.99985 * 179.97438 * 3 2 1 6 6 C 1.39626 * 120.15002 * 179.97438 * 5 3 2 7 7 C 1.37951 * 119.84735 * 180.02562 * 6 5 3 8 8 C 1.38371 * 120.14715 * 0.02733 * 7 6 5 9 9 C 1.50700 * 119.84647 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.46663 * 90.00213 * 9 8 7 11 11 C 1.46901 * 110.99658 * 170.00227 * 10 9 8 12 12 C 1.50707 * 109.46727 * 201.32289 * 11 10 9 13 13 H 1.07999 * 120.00244 * 2.20777 * 12 11 10 14 14 C 1.37872 * 119.99805 * 182.20926 * 12 11 10 15 15 N 1.31517 * 120.00104 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00280 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47178 * 89.99912 * 16 14 12 18 18 H 1.48502 * 109.47226 * 210.00295 * 16 14 12 19 19 H 1.48500 * 109.46857 * 330.00029 * 16 14 12 20 20 C 1.46902 * 110.99890 * 293.95024 * 10 9 8 21 21 C 1.53000 * 109.47163 * 173.61238 * 20 10 9 22 22 C 1.52999 * 109.47577 * 293.61491 * 20 10 9 23 23 C 1.38369 * 120.30256 * 0.23062 * 8 7 6 24 24 C 1.37944 * 120.15305 * 359.48760 * 23 8 7 25 25 H 1.08996 * 109.47346 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47210 * 300.00068 * 1 2 3 27 27 H 1.09004 * 109.47551 * 60.00160 * 1 2 3 28 28 H 1.07997 * 120.08087 * 0.02562 * 6 5 3 29 29 H 1.07994 * 119.92412 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.47088 * 330.00297 * 9 8 7 31 31 H 1.08996 * 109.47160 * 209.99709 * 9 8 7 32 32 H 1.08999 * 109.46898 * 321.31868 * 11 10 9 33 33 H 1.09004 * 109.47318 * 81.32661 * 11 10 9 34 34 H 0.96993 * 120.00128 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.47014 * 53.61938 * 20 10 9 36 36 H 1.09000 * 109.47057 * 66.61901 * 21 20 10 37 37 H 1.09001 * 109.47286 * 186.62255 * 21 20 10 38 38 H 1.09003 * 109.46941 * 306.62144 * 21 20 10 39 39 H 1.09001 * 109.46862 * 59.99483 * 22 20 10 40 40 H 1.08996 * 109.47264 * 180.02562 * 22 20 10 41 41 H 1.09002 * 109.46652 * 299.99908 * 22 20 10 42 42 H 1.08000 * 119.92214 * 179.72526 * 23 8 7 43 43 H 1.07994 * 120.07643 * 180.25916 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.1759 2.5201 0.0000 7 6 5.5538 2.5851 0.0000 8 6 6.3044 1.4226 0.0000 9 6 7.8093 1.5014 -0.0006 10 7 8.2987 1.5273 1.3843 11 6 9.7581 1.3654 1.4299 12 6 10.1669 0.8784 2.7963 13 1 9.4148 0.6724 3.5435 14 6 11.5010 0.6960 3.0925 15 7 11.8578 0.2706 4.2847 16 14 12.8020 1.0531 1.8003 17 1 13.2282 2.4717 1.9059 18 1 13.9732 0.1667 2.0188 19 1 12.2386 0.8049 0.4490 20 6 7.8844 2.7608 2.0661 21 6 8.2726 2.6817 3.5439 22 6 8.5808 3.9598 1.4193 23 6 5.6794 0.1881 -0.0048 24 6 4.3023 0.1086 0.0010 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.5913 3.4282 -0.0004 29 1 6.0479 3.5454 0.0000 30 1 8.1253 2.4091 -0.5147 31 1 8.2185 0.6316 -0.5143 32 1 10.0667 0.6391 0.6780 33 1 10.2365 2.3237 1.2276 34 1 12.7964 0.1426 4.4931 35 1 6.8041 2.8781 1.9801 36 1 9.3588 2.6827 3.6348 37 1 7.8629 3.5417 4.0738 38 1 7.8727 1.7644 3.9761 39 1 8.3042 4.0160 0.3665 40 1 8.2737 4.8749 1.9255 41 1 9.6610 3.8423 1.5054 42 1 6.2712 -0.7153 -0.0093 43 1 3.8158 -0.8556 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042529449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:29 Heat of formation + Delta-G solvation = -47.421110 kcal Electronic energy + Delta-G solvation = -23254.732684 eV Core-core repulsion = 19879.520389 eV Total energy + Delta-G solvation = -3375.212294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67155 -39.34135 -37.57173 -36.53177 -32.90668 -32.29539 -31.12731 -30.47325 -28.57870 -27.56187 -26.44214 -25.15905 -22.82494 -22.43258 -21.88982 -20.66409 -18.70241 -18.06789 -17.23262 -16.84037 -16.50661 -15.67597 -15.35116 -15.07988 -14.73888 -14.38429 -14.03430 -13.66399 -13.59471 -13.47925 -13.21229 -12.83632 -12.59427 -12.34074 -12.27329 -11.82121 -11.61911 -11.51736 -11.25378 -11.10054 -11.01444 -10.91559 -10.69721 -10.68679 -10.50629 -10.28769 -9.99590 -9.71196 -9.06711 -8.94887 -8.83379 -8.52670 -7.38666 -6.04101 -3.97849 0.66137 1.39018 2.46141 2.52767 3.25443 3.34371 3.35140 3.75314 4.40905 4.57097 4.77034 4.82093 4.86783 4.93868 4.94303 5.00252 5.25087 5.25900 5.32965 5.39639 5.55775 5.68007 5.73983 5.78153 5.90395 5.96476 6.04087 6.09025 6.23047 6.25976 6.34759 6.40860 6.47927 6.58686 6.66882 6.84526 6.85936 6.87584 7.10980 7.48392 7.59081 7.63548 7.87154 8.02646 8.66413 9.08013 9.56875 11.08228 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028611 B = 0.003366 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.406037 B = 8316.102074 C = 8507.040693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.512 3.488 4 O -0.513 6.513 5 C -0.142 4.142 6 C -0.055 4.055 7 C -0.129 4.129 8 C -0.020 4.020 9 C 0.076 3.924 10 N -0.513 5.513 11 C 0.154 3.846 12 C -0.500 4.500 13 H 0.091 0.909 14 C 0.066 3.934 15 N -0.900 5.900 16 Si 0.868 3.132 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.269 1.269 20 C 0.083 3.917 21 C -0.140 4.140 22 C -0.189 4.189 23 C -0.113 4.113 24 C -0.061 4.061 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.023 0.977 33 H -0.002 1.002 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.135 0.865 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.650 1.909 -10.429 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.358 3.642 4 O -0.402 6.402 5 C -0.143 4.143 6 C -0.073 4.073 7 C -0.147 4.147 8 C -0.021 4.021 9 C -0.052 4.052 10 N -0.236 5.236 11 C 0.028 3.972 12 C -0.538 4.538 13 H 0.109 0.891 14 C -0.135 4.135 15 N -0.540 5.540 16 Si 0.696 3.304 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.194 1.194 20 C -0.025 4.025 21 C -0.197 4.197 22 C -0.248 4.248 23 C -0.131 4.131 24 C -0.079 4.079 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.041 0.959 33 H 0.016 0.984 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.153 0.847 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.911 1.734 -10.064 19.755 hybrid contribution 0.956 0.912 -1.031 1.676 sum -15.955 2.646 -11.095 19.613 Atomic orbital electron populations 1.23266 0.76154 1.03709 1.02559 1.86557 1.23421 1.32811 1.84379 1.21331 0.89305 0.81270 0.72287 1.90814 1.66921 1.36078 1.46415 1.18990 0.88437 0.95259 1.11612 1.21153 0.94469 0.96437 0.95231 1.21067 0.92994 0.98702 1.01966 1.20290 0.96378 0.92901 0.92516 1.21248 0.89682 1.01421 0.92831 1.62332 1.15344 1.35077 1.10865 1.20355 0.82515 0.95312 0.98978 1.21205 0.92968 1.42740 0.96915 0.89113 1.24886 0.98233 0.95326 0.95037 1.69879 1.16884 1.47002 1.20194 0.86973 0.82124 0.78389 0.82921 1.20468 1.21284 1.19351 1.21605 0.97995 0.87203 0.95723 1.22108 1.05106 0.99502 0.93013 1.22521 1.02940 0.99486 0.99839 1.21098 0.93826 0.98075 1.00151 1.21424 0.93907 0.97621 0.94956 0.87996 0.91842 0.91922 0.84905 0.85253 0.94118 0.89984 0.95879 0.98431 0.92743 0.91577 0.88798 0.95290 0.92339 0.93659 0.92875 0.91330 0.84740 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.98 9.82 -40.51 -0.40 -4.38 16 3 C 0.51 6.74 7.90 34.61 0.27 7.01 16 4 O -0.51 -7.75 16.14 -19.25 -0.31 -8.06 16 5 C -0.14 -1.83 5.87 -104.98 -0.62 -2.45 16 6 C -0.05 -0.69 9.60 -39.17 -0.38 -1.07 16 7 C -0.13 -1.65 7.85 -39.64 -0.31 -1.96 16 8 C -0.02 -0.28 4.90 -104.52 -0.51 -0.79 16 9 C 0.08 1.19 4.94 -4.97 -0.02 1.16 16 10 N -0.51 -9.85 4.48 -229.51 -1.03 -10.88 16 11 C 0.15 3.46 3.57 -4.97 -0.02 3.44 16 12 C -0.50 -13.24 7.12 -34.44 -0.25 -13.49 16 13 H 0.09 2.62 6.10 -52.49 -0.32 2.30 16 14 C 0.07 1.83 5.47 -17.82 -0.10 1.73 16 15 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 16 Si 0.87 20.70 27.42 -169.99 -4.66 16.04 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.14 6.61 56.52 0.37 -5.77 16 20 C 0.08 1.48 2.66 -67.71 -0.18 1.30 16 21 C -0.14 -2.77 7.74 37.16 0.29 -2.49 16 22 C -0.19 -3.04 8.57 37.16 0.32 -2.72 16 23 C -0.11 -1.47 9.68 -39.64 -0.38 -1.85 16 24 C -0.06 -0.74 9.62 -39.17 -0.38 -1.11 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.13 1.57 7.65 -52.49 -0.40 1.17 16 29 H 0.13 1.51 7.68 -52.49 -0.40 1.11 16 30 H 0.04 0.60 6.17 -51.93 -0.32 0.28 16 31 H 0.08 1.25 7.76 -51.93 -0.40 0.84 16 32 H 0.02 0.53 6.92 -51.93 -0.36 0.17 16 33 H 0.00 -0.04 4.78 -51.93 -0.25 -0.29 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.10 5.71 -51.93 -0.30 0.80 16 36 H 0.09 2.15 5.79 -51.93 -0.30 1.85 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 1.24 7.29 -51.93 -0.38 0.86 16 39 H 0.04 0.64 6.19 -51.93 -0.32 0.32 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.24 6.02 -51.93 -0.31 0.93 16 42 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.14 1.38 7.61 -52.49 -0.40 0.98 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -30.36 341.43 -7.84 -38.20 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.16 Total: 1.74 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.20 Total: -11.93 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.25 Total: -36.76 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.71 Total: -12.44 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.66 Total: 16.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.36 -7.84 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.226 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds