Wall clock time and date at job start Tue Mar 31 2020 06:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34708 * 116.99762 * 2 1 4 4 O 1.21475 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.47727 * 119.99985 * 179.97438 * 3 2 1 6 6 C 1.39626 * 120.15002 * 179.97438 * 5 3 2 7 7 C 1.37951 * 119.84735 * 180.02562 * 6 5 3 8 8 C 1.38371 * 120.14715 * 0.02733 * 7 6 5 9 9 C 1.50700 * 119.84647 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.46663 * 90.00213 * 9 8 7 11 11 C 1.46901 * 110.99658 * 170.00227 * 10 9 8 12 12 C 1.50707 * 109.46727 * 201.32289 * 11 10 9 13 13 H 1.07999 * 120.00244 * 2.20777 * 12 11 10 14 14 C 1.37872 * 119.99805 * 182.20926 * 12 11 10 15 15 N 1.31517 * 120.00104 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00280 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47178 * 89.99912 * 16 14 12 18 18 H 1.48502 * 109.47226 * 210.00295 * 16 14 12 19 19 H 1.48500 * 109.46857 * 330.00029 * 16 14 12 20 20 C 1.46902 * 110.99890 * 293.95024 * 10 9 8 21 21 C 1.53000 * 109.47163 * 173.61238 * 20 10 9 22 22 C 1.52999 * 109.47577 * 293.61491 * 20 10 9 23 23 C 1.38369 * 120.30256 * 0.23062 * 8 7 6 24 24 C 1.37944 * 120.15305 * 359.48760 * 23 8 7 25 25 H 1.08996 * 109.47346 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47210 * 300.00068 * 1 2 3 27 27 H 1.09004 * 109.47551 * 60.00160 * 1 2 3 28 28 H 1.07997 * 120.08087 * 0.02562 * 6 5 3 29 29 H 1.07994 * 119.92412 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.47088 * 330.00297 * 9 8 7 31 31 H 1.08996 * 109.47160 * 209.99709 * 9 8 7 32 32 H 1.08999 * 109.46898 * 321.31868 * 11 10 9 33 33 H 1.09004 * 109.47318 * 81.32661 * 11 10 9 34 34 H 0.96993 * 120.00128 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.47014 * 53.61938 * 20 10 9 36 36 H 1.09000 * 109.47057 * 66.61901 * 21 20 10 37 37 H 1.09001 * 109.47286 * 186.62255 * 21 20 10 38 38 H 1.09003 * 109.46941 * 306.62144 * 21 20 10 39 39 H 1.09001 * 109.46862 * 59.99483 * 22 20 10 40 40 H 1.08996 * 109.47264 * 180.02562 * 22 20 10 41 41 H 1.09002 * 109.46652 * 299.99908 * 22 20 10 42 42 H 1.08000 * 119.92214 * 179.72526 * 23 8 7 43 43 H 1.07994 * 120.07643 * 180.25916 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.1759 2.5201 0.0000 7 6 5.5538 2.5851 0.0000 8 6 6.3044 1.4226 0.0000 9 6 7.8093 1.5014 -0.0006 10 7 8.2987 1.5273 1.3843 11 6 9.7581 1.3654 1.4299 12 6 10.1669 0.8784 2.7963 13 1 9.4148 0.6724 3.5435 14 6 11.5010 0.6960 3.0925 15 7 11.8578 0.2706 4.2847 16 14 12.8020 1.0531 1.8003 17 1 13.2282 2.4717 1.9059 18 1 13.9732 0.1667 2.0188 19 1 12.2386 0.8049 0.4490 20 6 7.8844 2.7608 2.0661 21 6 8.2726 2.6817 3.5439 22 6 8.5808 3.9598 1.4193 23 6 5.6794 0.1881 -0.0048 24 6 4.3023 0.1086 0.0010 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.5913 3.4282 -0.0004 29 1 6.0479 3.5454 0.0000 30 1 8.1253 2.4091 -0.5147 31 1 8.2185 0.6316 -0.5143 32 1 10.0667 0.6391 0.6780 33 1 10.2365 2.3237 1.2276 34 1 12.7964 0.1426 4.4931 35 1 6.8041 2.8781 1.9801 36 1 9.3588 2.6827 3.6348 37 1 7.8629 3.5417 4.0738 38 1 7.8727 1.7644 3.9761 39 1 8.3042 4.0160 0.3665 40 1 8.2737 4.8749 1.9255 41 1 9.6610 3.8423 1.5054 42 1 6.2712 -0.7153 -0.0093 43 1 3.8158 -0.8556 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042529449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:29 Heat of formation + Delta-G solvation = -65.313231 kcal Electronic energy + Delta-G solvation = -23255.508544 eV Core-core repulsion = 19879.520389 eV Total energy + Delta-G solvation = -3375.988155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63922 -40.47281 -38.88117 -37.49679 -34.71546 -33.69333 -32.24759 -31.79007 -30.00879 -28.57661 -27.88502 -26.42874 -23.96508 -23.65985 -23.40494 -21.67955 -20.17861 -19.06516 -18.82927 -18.15406 -17.39793 -17.10781 -16.59085 -16.30476 -15.99844 -15.64421 -15.51042 -14.88497 -14.66162 -14.54471 -14.42278 -14.23033 -14.04906 -13.50413 -13.27408 -13.11426 -13.06349 -12.95745 -12.73011 -12.64896 -12.37593 -12.14227 -11.92613 -11.83431 -11.83111 -11.78303 -11.63901 -11.35794 -10.98120 -10.63355 -9.93244 -9.88496 -8.86688 -8.15981 -6.12897 -0.35151 0.42235 1.37425 1.39855 1.45241 1.48775 1.68343 2.41185 2.72766 3.16411 3.40538 3.64783 3.81477 3.93074 4.01241 4.16563 4.27133 4.30102 4.33564 4.38136 4.40735 4.55752 4.63004 4.67933 4.70266 4.83689 4.85058 4.93047 4.97956 5.05678 5.09532 5.16747 5.19946 5.22445 5.29015 5.38632 5.54401 5.63292 5.69308 5.79456 5.87541 6.11854 6.51316 6.63632 6.75252 6.92542 7.45230 8.99774 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028611 B = 0.003366 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.406037 B = 8316.102074 C = 8507.040693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.513 3.487 4 O -0.538 6.538 5 C -0.150 4.150 6 C -0.057 4.057 7 C -0.126 4.126 8 C -0.033 4.033 9 C 0.079 3.921 10 N -0.531 5.531 11 C 0.163 3.837 12 C -0.490 4.490 13 H 0.053 0.947 14 C 0.005 3.995 15 N -0.952 5.952 16 Si 0.933 3.067 17 H -0.272 1.272 18 H -0.290 1.290 19 H -0.248 1.248 20 C 0.085 3.915 21 C -0.133 4.133 22 C -0.183 4.183 23 C -0.120 4.120 24 C -0.055 4.055 25 H 0.134 0.866 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.005 0.995 34 H 0.262 0.738 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.139 0.861 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.761 2.637 -12.659 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.360 3.640 4 O -0.430 6.430 5 C -0.152 4.152 6 C -0.076 4.076 7 C -0.144 4.144 8 C -0.033 4.033 9 C -0.048 4.048 10 N -0.254 5.254 11 C 0.036 3.964 12 C -0.529 4.529 13 H 0.071 0.929 14 C -0.191 4.191 15 N -0.594 5.594 16 Si 0.758 3.242 17 H -0.198 1.198 18 H -0.216 1.216 19 H -0.171 1.171 20 C -0.023 4.023 21 C -0.190 4.190 22 C -0.241 4.241 23 C -0.138 4.138 24 C -0.073 4.073 25 H 0.152 0.848 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.042 0.958 33 H 0.022 0.978 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.157 0.843 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.052 2.456 -12.319 21.992 hybrid contribution 1.108 0.637 -0.280 1.309 sum -16.944 3.093 -12.599 21.340 Atomic orbital electron populations 1.23598 0.74235 1.05930 1.02659 1.86545 1.25313 1.31702 1.83786 1.21392 0.89407 0.81467 0.71690 1.90799 1.67443 1.36941 1.47770 1.19168 0.88640 0.95739 1.11604 1.21283 0.94567 0.96749 0.94963 1.21172 0.92956 0.98923 1.01389 1.20213 0.95428 0.93713 0.93965 1.21251 0.90747 1.02273 0.90546 1.62153 1.13191 1.36406 1.13690 1.20105 0.84956 0.95221 0.96086 1.21424 0.92163 1.41211 0.98107 0.92921 1.25708 1.00761 0.95615 0.97026 1.70043 1.17234 1.49511 1.22653 0.85919 0.78998 0.78245 0.81020 1.19772 1.21636 1.17142 1.21609 0.99135 0.87595 0.93999 1.21953 1.02435 0.99232 0.95386 1.22433 1.01094 0.99236 1.01353 1.21232 0.94328 0.98131 1.00101 1.21570 0.93511 0.98234 0.94030 0.84766 0.91967 0.91660 0.84207 0.83818 0.92642 0.89770 0.95792 0.97755 0.92937 0.89767 0.92465 0.92869 0.94979 0.91342 0.90969 0.93605 0.84277 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.34 9.82 -56.17 -0.55 -7.89 16 3 C 0.51 12.74 7.90 70.33 0.56 13.30 16 4 O -0.54 -15.64 16.14 19.92 0.32 -15.31 16 5 C -0.15 -3.61 5.87 -20.10 -0.12 -3.73 16 6 C -0.06 -1.34 9.60 22.54 0.22 -1.12 16 7 C -0.13 -2.90 7.85 22.23 0.17 -2.72 16 8 C -0.03 -0.83 4.90 -19.80 -0.10 -0.93 16 9 C 0.08 2.28 4.94 85.56 0.42 2.70 16 10 N -0.53 -19.77 4.48 -880.03 -3.94 -23.70 16 11 C 0.16 7.18 3.57 85.56 0.31 7.48 16 12 C -0.49 -26.60 7.12 25.60 0.18 -26.41 16 13 H 0.05 3.20 6.10 -2.91 -0.02 3.18 16 14 C 0.00 0.28 5.47 84.65 0.46 0.74 16 15 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 16 Si 0.93 42.75 27.42 68.60 1.88 44.63 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.25 -10.41 6.61 99.48 0.66 -9.76 16 20 C 0.08 2.88 2.66 44.91 0.12 3.00 16 21 C -0.13 -5.30 7.74 71.98 0.56 -4.75 16 22 C -0.18 -5.36 8.57 71.98 0.62 -4.75 16 23 C -0.12 -2.89 9.68 22.23 0.22 -2.67 16 24 C -0.06 -1.23 9.62 22.54 0.22 -1.01 16 25 H 0.13 0.92 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.14 3.03 7.65 -2.91 -0.02 3.01 16 29 H 0.14 2.84 7.68 -2.91 -0.02 2.82 16 30 H 0.06 1.44 6.17 -2.39 -0.01 1.43 16 31 H 0.08 2.37 7.76 -2.39 -0.02 2.35 16 32 H 0.02 1.06 6.92 -2.39 -0.02 1.04 16 33 H 0.00 0.21 4.78 -2.39 -0.01 0.20 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.08 2.59 5.71 -2.39 -0.01 2.58 16 36 H 0.06 2.70 5.79 -2.39 -0.01 2.69 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.03 1.40 7.29 -2.39 -0.02 1.39 16 39 H 0.07 1.69 6.19 -2.39 -0.01 1.67 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.56 6.02 -2.39 -0.01 1.55 16 42 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 43 H 0.15 2.77 7.61 -2.91 -0.02 2.75 16 Total: -1.00 -67.09 341.43 4.00 -63.09 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.96 Total: 16.60 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 5.03 Total: -19.28 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -3.64 Total: -81.84 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.23 Total: -23.20 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.63 kcal Total: -67.09 4.00 -63.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.218 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds