Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99780 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.46985 * 90.00415 * 13 12 10 15 15 H 1.07997 * 119.99714 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99868 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00207 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47543 * 89.99502 * 18 16 14 20 20 H 1.48502 * 109.47243 * 209.99830 * 18 16 14 21 21 H 1.48502 * 109.47421 * 329.99921 * 18 16 14 22 22 C 1.46497 * 119.99990 * 0.02562 * 12 10 9 23 23 C 1.52997 * 109.47347 * 119.99675 * 22 12 10 24 24 C 1.53004 * 109.46860 * 240.00070 * 22 12 10 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 29 29 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 30 30 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 33 33 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 34 34 H 1.09005 * 109.46957 * 209.99808 * 13 12 10 35 35 H 1.09001 * 109.47783 * 330.00075 * 13 12 10 36 36 H 0.96996 * 120.00100 * 179.97438 * 17 16 14 37 37 H 1.09006 * 109.47045 * 359.97438 * 22 12 10 38 38 H 1.08995 * 109.46839 * 60.00284 * 23 22 12 39 39 H 1.09004 * 109.46933 * 179.97438 * 23 22 12 40 40 H 1.08991 * 109.47381 * 299.99749 * 23 22 12 41 41 H 1.09001 * 109.47417 * 60.00156 * 24 22 12 42 42 H 1.09004 * 109.47130 * 179.97438 * 24 22 12 43 43 H 1.08993 * 109.46787 * 299.99682 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 6 5.2943 -2.0649 -3.0359 14 6 6.5364 -1.4550 -3.6331 15 1 7.1420 -0.7800 -3.0466 16 6 6.8994 -1.7587 -4.9281 17 7 6.1620 -2.5810 -5.6420 18 14 8.4384 -1.0022 -5.6684 19 1 9.6025 -1.8840 -5.3988 20 1 8.2601 -0.8525 -7.1351 21 1 8.6764 0.3314 -5.0600 22 6 5.7308 -2.3329 -0.5508 23 6 5.1628 -3.7532 -0.5219 24 6 7.2478 -2.3939 -0.7405 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2128 2.3203 -0.0010 29 1 1.3339 4.5114 0.0026 30 1 3.7920 4.6381 -0.0024 31 1 5.1344 2.5754 -0.0023 32 1 5.2326 0.2265 0.4336 33 1 3.7469 -0.7414 0.5899 34 1 5.3868 -3.1510 -3.0360 35 1 4.4262 -1.7741 -3.6276 36 1 6.4172 -2.7944 -6.5532 37 1 5.5025 -1.8308 0.3894 38 1 5.3915 -4.2551 -1.4620 39 1 5.6106 -4.3069 0.3034 40 1 4.0822 -3.7098 -0.3867 41 1 7.6525 -1.3820 -0.7610 42 1 7.6953 -2.9471 0.0853 43 1 7.4764 -2.8958 -1.6806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = -51.705202 kcal Electronic energy + Delta-G solvation = -23953.092338 eV Core-core repulsion = 20577.694271 eV Total energy + Delta-G solvation = -3375.398066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23412 -38.85129 -37.22865 -35.79818 -32.97770 -32.43276 -30.71379 -29.99922 -28.44473 -27.25208 -26.69440 -26.19171 -22.93897 -22.00563 -21.58131 -20.92037 -18.18915 -17.61871 -16.59281 -16.40272 -16.16194 -15.61926 -15.54129 -14.88361 -14.39922 -14.32360 -14.07830 -13.56343 -13.40308 -13.19983 -12.85670 -12.61154 -12.36284 -12.25989 -11.94941 -11.67603 -11.59542 -11.48154 -11.22892 -11.07042 -11.02814 -10.85228 -10.79081 -10.69081 -10.45277 -10.29467 -9.94221 -9.46134 -8.93600 -8.56030 -8.35616 -7.95871 -7.51755 -5.96747 -3.99526 1.46510 1.61134 3.33400 3.39271 3.40371 3.44386 3.62014 3.82223 4.17991 4.51089 4.82535 4.91548 5.06531 5.13900 5.17736 5.29652 5.34915 5.37994 5.43998 5.46261 5.50592 5.63917 5.68173 5.75290 5.78478 5.88947 6.07010 6.14768 6.25029 6.35146 6.43101 6.44629 6.55664 6.67761 6.68295 6.92365 7.02454 7.22314 7.52061 7.57495 7.69773 8.01189 8.34163 8.58845 9.00642 9.26701 9.64517 11.11401 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.004831 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.272040 B = 5794.997585 C = 6375.338704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.142 3.858 4 C -0.211 4.211 5 C -0.088 4.088 6 C -0.158 4.158 7 C -0.071 4.071 8 C -0.085 4.085 9 C -0.097 4.097 10 C 0.512 3.488 11 O -0.535 6.535 12 N -0.595 5.595 13 C 0.247 3.753 14 C -0.515 4.515 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.133 3.867 23 C -0.161 4.161 24 C -0.157 4.157 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.377 5.073 16.215 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.096 3.904 4 C -0.229 4.229 5 C -0.106 4.106 6 C -0.176 4.176 7 C -0.089 4.089 8 C -0.086 4.086 9 C -0.137 4.137 10 C 0.298 3.702 11 O -0.412 6.412 12 N -0.328 5.328 13 C 0.128 3.872 14 C -0.554 4.554 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.029 3.971 23 C -0.220 4.220 24 C -0.215 4.215 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.575 5.095 15.519 18.005 hybrid contribution 0.645 0.495 -0.590 1.005 sum -6.930 5.590 14.928 17.382 Atomic orbital electron populations 1.23012 0.78827 1.03753 1.00990 1.86095 1.20970 1.26882 1.88429 1.18764 0.91699 0.84170 0.95723 1.21123 0.99660 0.92424 1.09719 1.20839 0.94668 0.96691 0.98373 1.20956 0.93884 0.98157 1.04586 1.20861 0.99879 0.91058 0.97064 1.18751 0.90285 0.94985 1.04581 1.20585 1.00273 0.95658 0.97173 1.20119 0.79105 0.81100 0.89887 1.90667 1.48600 1.55762 1.46143 1.48293 1.50792 1.24540 1.09169 1.19194 0.97573 0.94693 0.75738 1.21457 1.08703 1.27299 0.97966 0.92439 1.24924 0.97110 0.95330 0.96861 1.69933 1.38429 1.35371 1.09893 0.86566 0.83187 0.79662 0.78416 1.20733 1.21232 1.19973 1.20978 0.93875 0.92568 0.89717 1.22152 1.00629 0.96678 1.02499 1.22144 0.94545 1.02153 1.02638 0.93013 0.92711 0.88424 0.85803 0.86202 0.86119 0.85533 0.88862 0.88539 0.94932 0.94239 0.92891 0.90788 0.91390 0.92396 0.92893 0.92806 0.93359 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.83 9.63 -19.42 -0.19 -5.01 16 3 C 0.14 2.27 6.66 -39.22 -0.26 2.00 16 4 C -0.21 -2.86 9.04 -39.43 -0.36 -3.22 16 5 C -0.09 -1.10 10.04 -39.60 -0.40 -1.50 16 6 C -0.16 -2.08 10.04 -39.56 -0.40 -2.48 16 7 C -0.07 -1.05 9.68 -39.61 -0.38 -1.44 16 8 C -0.08 -1.41 4.39 -104.48 -0.46 -1.87 16 9 C -0.10 -1.59 3.86 -29.04 -0.11 -1.71 16 10 C 0.51 11.21 7.67 -10.98 -0.08 11.12 16 11 O -0.53 -14.22 15.61 5.56 0.09 -14.14 16 12 N -0.60 -12.93 2.39 -167.47 -0.40 -13.32 16 13 C 0.25 6.54 4.59 -5.19 -0.02 6.52 16 14 C -0.52 -14.57 7.83 -34.44 -0.27 -14.84 16 15 H 0.06 1.62 7.63 -52.49 -0.40 1.22 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 18 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.13 2.24 3.17 -67.93 -0.22 2.03 16 23 C -0.16 -2.46 9.17 37.16 0.34 -2.12 16 24 C -0.16 -2.63 8.48 37.16 0.32 -2.32 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.09 1.31 7.70 -51.93 -0.40 0.91 16 33 H 0.10 1.43 7.34 -51.93 -0.38 1.05 16 34 H 0.03 0.87 6.42 -51.93 -0.33 0.54 16 35 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.07 1.04 5.77 -51.93 -0.30 0.74 16 38 H 0.07 1.17 6.66 -51.93 -0.35 0.83 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -34.76 352.35 -7.43 -42.19 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.55 Total: 0.97 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.41 Total: -6.89 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.34 Total: -39.55 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.10 Total: -19.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.76 -7.43 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.513 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds