Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99780 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.46985 * 90.00415 * 13 12 10 15 15 H 1.07997 * 119.99714 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99868 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00207 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47543 * 89.99502 * 18 16 14 20 20 H 1.48502 * 109.47243 * 209.99830 * 18 16 14 21 21 H 1.48502 * 109.47421 * 329.99921 * 18 16 14 22 22 C 1.46497 * 119.99990 * 0.02562 * 12 10 9 23 23 C 1.52997 * 109.47347 * 119.99675 * 22 12 10 24 24 C 1.53004 * 109.46860 * 240.00070 * 22 12 10 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 29 29 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 30 30 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 33 33 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 34 34 H 1.09005 * 109.46957 * 209.99808 * 13 12 10 35 35 H 1.09001 * 109.47783 * 330.00075 * 13 12 10 36 36 H 0.96996 * 120.00100 * 179.97438 * 17 16 14 37 37 H 1.09006 * 109.47045 * 359.97438 * 22 12 10 38 38 H 1.08995 * 109.46839 * 60.00284 * 23 22 12 39 39 H 1.09004 * 109.46933 * 179.97438 * 23 22 12 40 40 H 1.08991 * 109.47381 * 299.99749 * 23 22 12 41 41 H 1.09001 * 109.47417 * 60.00156 * 24 22 12 42 42 H 1.09004 * 109.47130 * 179.97438 * 24 22 12 43 43 H 1.08993 * 109.46787 * 299.99682 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 6 5.2943 -2.0649 -3.0359 14 6 6.5364 -1.4550 -3.6331 15 1 7.1420 -0.7800 -3.0466 16 6 6.8994 -1.7587 -4.9281 17 7 6.1620 -2.5810 -5.6420 18 14 8.4384 -1.0022 -5.6684 19 1 9.6025 -1.8840 -5.3988 20 1 8.2601 -0.8525 -7.1351 21 1 8.6764 0.3314 -5.0600 22 6 5.7308 -2.3329 -0.5508 23 6 5.1628 -3.7532 -0.5219 24 6 7.2478 -2.3939 -0.7405 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2128 2.3203 -0.0010 29 1 1.3339 4.5114 0.0026 30 1 3.7920 4.6381 -0.0024 31 1 5.1344 2.5754 -0.0023 32 1 5.2326 0.2265 0.4336 33 1 3.7469 -0.7414 0.5899 34 1 5.3868 -3.1510 -3.0360 35 1 4.4262 -1.7741 -3.6276 36 1 6.4172 -2.7944 -6.5532 37 1 5.5025 -1.8308 0.3894 38 1 5.3915 -4.2551 -1.4620 39 1 5.6106 -4.3069 0.3034 40 1 4.0822 -3.7098 -0.3867 41 1 7.6525 -1.3820 -0.7610 42 1 7.6953 -2.9471 0.0853 43 1 7.4764 -2.8958 -1.6806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = -73.380882 kcal Electronic energy + Delta-G solvation = -23954.032266 eV Core-core repulsion = 20577.694271 eV Total energy + Delta-G solvation = -3376.337994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41896 -40.39614 -38.28475 -37.45368 -34.97488 -33.80672 -32.37361 -31.03080 -30.05584 -28.42607 -27.98435 -27.66189 -24.88802 -23.04592 -22.94180 -22.27510 -19.64147 -18.80593 -18.58208 -18.16696 -17.28529 -16.98791 -16.56617 -16.51883 -16.04214 -15.75975 -15.29948 -14.83635 -14.76021 -14.66096 -14.29301 -14.03328 -13.88655 -13.42740 -13.30848 -13.20111 -12.96866 -12.85548 -12.80740 -12.72804 -12.48782 -12.24894 -12.17762 -12.07560 -11.97388 -11.75392 -11.59005 -11.48238 -10.59957 -10.58123 -9.74650 -9.36319 -9.04215 -8.17815 -6.29822 0.39364 0.55296 1.35492 1.38594 1.48534 1.93678 2.33462 2.43180 2.47776 2.91432 3.11597 3.72619 3.90142 3.91486 4.04748 4.14711 4.27152 4.31761 4.37953 4.38280 4.44343 4.46753 4.55382 4.66940 4.70053 4.83923 4.86717 4.88752 5.02199 5.06601 5.12296 5.15001 5.27300 5.41399 5.45323 5.52041 5.60205 5.62636 5.67109 5.92403 5.94264 6.14018 6.50216 6.76908 6.89922 7.34127 7.58690 8.89605 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.004831 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.272040 B = 5794.997585 C = 6375.338704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.338 6.338 3 C 0.121 3.879 4 C -0.217 4.217 5 C -0.086 4.086 6 C -0.163 4.163 7 C -0.086 4.086 8 C -0.119 4.119 9 C -0.080 4.080 10 C 0.502 3.498 11 O -0.593 6.593 12 N -0.600 5.600 13 C 0.266 3.734 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.962 3.038 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.124 3.876 23 C -0.156 4.156 24 C -0.151 4.151 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.112 0.888 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.024 0.976 35 H -0.014 1.014 36 H 0.264 0.736 37 H 0.113 0.887 38 H 0.037 0.963 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 6.164 18.544 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C 0.075 3.925 4 C -0.236 4.236 5 C -0.104 4.104 6 C -0.181 4.181 7 C -0.104 4.104 8 C -0.120 4.120 9 C -0.120 4.120 10 C 0.291 3.709 11 O -0.474 6.474 12 N -0.331 5.331 13 C 0.145 3.855 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.194 4.194 17 N -0.573 5.573 18 Si 0.787 3.213 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.198 1.198 22 C 0.021 3.979 23 C -0.214 4.214 24 C -0.209 4.209 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.165 0.835 29 H 0.171 0.829 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.041 0.959 35 H 0.004 0.996 36 H 0.073 0.927 37 H 0.131 0.869 38 H 0.056 0.944 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.979 6.163 17.902 20.179 hybrid contribution 0.369 0.158 -1.286 1.347 sum -6.610 6.321 16.616 18.967 Atomic orbital electron populations 1.23282 0.76794 1.05204 1.02043 1.86038 1.23255 1.27267 1.88585 1.19064 0.92021 0.85056 0.96332 1.21479 1.00923 0.92132 1.09063 1.21298 0.94871 0.97614 0.96622 1.21334 0.94398 0.98711 1.03691 1.21129 1.00652 0.91347 0.97256 1.18954 0.90966 0.95369 1.06696 1.20500 1.02105 0.96334 0.93018 1.21156 0.77651 0.80238 0.91820 1.90622 1.50819 1.57487 1.48499 1.48355 1.51071 1.25127 1.08536 1.18598 0.94771 0.93922 0.78225 1.21659 1.09011 1.27072 0.98377 0.92766 1.25825 1.00440 0.95751 0.97354 1.70063 1.40285 1.36669 1.10294 0.85493 0.79580 0.78890 0.77330 1.18799 1.20960 1.19804 1.21418 0.93779 0.93318 0.89336 1.22111 1.00986 0.95762 1.02503 1.22078 0.94608 1.01810 1.02385 0.90548 0.92936 0.86932 0.83519 0.82903 0.83543 0.84739 0.86145 0.86810 0.95853 0.99574 0.92680 0.86881 0.94377 0.88358 0.92805 0.93625 0.89097 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.34 -10.41 9.63 -92.39 -0.89 -11.30 16 3 C 0.12 3.79 6.66 22.51 0.15 3.94 16 4 C -0.22 -5.57 9.04 22.37 0.20 -5.37 16 5 C -0.09 -1.97 10.04 22.26 0.22 -1.75 16 6 C -0.16 -3.99 10.04 22.28 0.22 -3.76 16 7 C -0.09 -2.49 9.68 22.25 0.22 -2.27 16 8 C -0.12 -3.88 4.39 -19.77 -0.09 -3.96 16 9 C -0.08 -2.57 3.86 29.10 0.11 -2.45 16 10 C 0.50 22.51 7.67 87.65 0.67 23.18 16 11 O -0.59 -33.12 15.61 -3.02 -0.05 -33.16 16 12 N -0.60 -26.65 2.39 -802.13 -1.91 -28.56 16 13 C 0.27 14.88 4.59 85.64 0.39 15.28 16 14 C -0.52 -30.58 7.83 25.60 0.20 -30.38 16 15 H 0.05 3.14 7.63 -2.91 -0.02 3.11 16 16 C 0.00 0.26 5.46 84.66 0.46 0.72 16 17 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 18 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 21 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 22 C 0.12 4.01 3.17 44.99 0.14 4.15 16 23 C -0.16 -4.55 9.17 71.98 0.66 -3.89 16 24 C -0.15 -4.85 8.48 71.98 0.61 -4.24 16 25 H 0.08 1.15 7.66 -2.39 -0.02 1.14 16 26 H 0.05 1.07 7.66 -2.39 -0.02 1.06 16 27 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.15 2.90 6.30 -2.91 -0.02 2.89 16 29 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.12 3.12 7.70 -2.38 -0.02 3.10 16 33 H 0.11 3.20 7.34 -2.38 -0.02 3.18 16 34 H 0.02 1.33 6.42 -2.38 -0.02 1.32 16 35 H -0.01 -0.91 7.42 -2.39 -0.02 -0.93 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.11 2.81 5.77 -2.38 -0.01 2.80 16 38 H 0.04 1.33 6.66 -2.39 -0.02 1.31 16 39 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 42 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.04 1.71 6.92 -2.39 -0.02 1.69 16 Total: -1.00 -80.71 352.35 5.74 -74.96 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.99 Total: 16.95 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.29 Total: -9.26 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.63 Total: -86.27 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.94 Total: -44.46 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -80.71 5.74 -74.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.581 kcal (2) G-P(sol) polarization free energy of solvation -80.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds