Wall clock time and date at job start Tue Mar 31 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.46899 * 269.97898 * 8 7 6 10 10 O 1.21283 * 120.00686 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99672 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99937 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.47010 * 90.00070 * 12 11 9 14 14 H 1.07999 * 119.99520 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99951 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99919 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99695 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47328 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47082 * 119.99945 * 17 15 13 20 20 H 1.48503 * 109.47315 * 239.99821 * 17 15 13 21 21 C 1.46495 * 120.00108 * 359.97438 * 11 9 8 22 22 C 1.52998 * 109.47072 * 119.99916 * 21 11 9 23 23 C 1.52998 * 109.47330 * 239.99879 * 21 11 9 24 24 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 25 25 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 29 29 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 30 30 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 31 31 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 32 32 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 33 33 H 1.08998 * 109.47393 * 210.00025 * 12 11 9 34 34 H 1.09004 * 109.47337 * 330.00368 * 12 11 9 35 35 H 0.97008 * 119.99561 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47368 * 0.02562 * 21 11 9 37 37 H 1.09003 * 109.47351 * 59.99776 * 22 21 11 38 38 H 1.08996 * 109.47431 * 180.02562 * 22 21 11 39 39 H 1.08999 * 109.47536 * 300.00083 * 22 21 11 40 40 H 1.09003 * 109.47098 * 59.99865 * 23 21 11 41 41 H 1.09000 * 109.47427 * 180.02562 * 23 21 11 42 42 H 1.09003 * 109.46752 * 300.00014 * 23 21 11 43 43 H 1.08006 * 120.02917 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 6 6.0624 2.6249 -1.4206 10 8 5.2755 2.5818 -2.3425 11 7 7.3856 2.6967 -1.6668 12 6 7.8734 2.7220 -3.0480 13 6 7.9634 4.1495 -3.5228 14 1 7.6856 4.9570 -2.8616 15 6 8.4006 4.4245 -4.8012 16 7 8.7384 3.4411 -5.6063 17 14 8.5129 6.1939 -5.3894 18 1 8.0781 7.1059 -4.3011 19 1 9.9163 6.5029 -5.7638 20 1 7.6330 6.3795 -6.5712 21 6 8.3360 2.7493 -0.5533 22 6 9.2822 1.5497 -0.6332 23 6 9.1465 4.0444 -0.6353 24 6 3.4311 1.2849 -0.0001 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2128 2.3203 -0.0106 29 1 1.3339 4.5114 0.0011 30 1 3.7922 4.6381 0.0002 31 1 5.8756 3.5067 0.5138 32 1 5.9714 1.7293 0.5143 33 1 8.8600 2.2611 -3.0934 34 1 7.1844 2.1694 -3.6868 35 1 9.0463 3.6347 -6.5056 36 1 7.7918 2.7201 0.3907 37 1 9.8265 1.5784 -1.5772 38 1 9.9891 1.5885 0.1956 39 1 8.7048 0.6270 -0.5747 40 1 8.4725 4.8991 -0.5784 41 1 9.8541 4.0834 0.1930 42 1 9.6908 4.0731 -1.5793 43 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:26 Heat of formation + Delta-G solvation = -53.231637 kcal Electronic energy + Delta-G solvation = -23417.096177 eV Core-core repulsion = 20041.631919 eV Total energy + Delta-G solvation = -3375.464258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.15689 -39.13473 -37.38164 -35.83328 -32.93081 -32.28497 -30.78269 -30.42201 -28.33538 -27.33063 -26.74762 -26.22343 -22.94724 -22.42180 -21.47191 -20.84982 -18.27097 -17.39543 -16.63835 -16.43971 -16.21425 -15.88693 -15.73223 -15.11905 -14.58665 -14.25804 -13.87971 -13.59921 -13.43885 -13.27924 -13.03605 -12.62617 -12.45252 -12.30443 -11.99814 -11.69330 -11.60148 -11.55820 -11.34303 -11.15082 -11.03766 -10.89107 -10.81862 -10.72611 -10.52158 -10.33924 -9.97936 -9.48736 -8.99423 -8.55948 -8.38731 -8.06772 -7.59058 -5.99855 -4.02783 1.44054 1.60448 3.25486 3.31413 3.39207 3.42031 3.50733 3.78019 4.12268 4.48342 4.79914 4.84965 5.01716 5.05168 5.13026 5.20865 5.29764 5.32923 5.34986 5.37476 5.49032 5.57812 5.60558 5.69880 5.72981 5.82822 6.03559 6.13722 6.19657 6.29875 6.38414 6.39290 6.54136 6.62765 6.75454 6.85307 6.98716 7.16861 7.45458 7.52655 7.62970 7.97488 8.30071 8.50356 8.96675 9.17269 9.61286 11.08323 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.004091 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.024686 B = 6843.157305 C = 7472.915595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.213 4.213 5 C -0.081 4.081 6 C -0.140 4.140 7 C -0.015 4.015 8 C -0.107 4.107 9 C 0.507 3.493 10 O -0.532 6.532 11 N -0.594 5.594 12 C 0.246 3.754 13 C -0.517 4.517 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.132 3.868 22 C -0.162 4.162 23 C -0.157 4.157 24 C -0.137 4.137 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -3.552 15.988 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.232 4.232 5 C -0.099 4.099 6 C -0.158 4.158 7 C -0.015 4.015 8 C -0.147 4.147 9 C 0.293 3.707 10 O -0.409 6.409 11 N -0.327 5.327 12 C 0.127 3.873 13 C -0.556 4.556 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.028 3.972 22 C -0.220 4.220 23 C -0.215 4.215 24 C -0.155 4.155 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.610 -3.811 15.288 18.455 hybrid contribution -0.100 1.181 -0.510 1.290 sum -9.709 -2.630 14.778 17.877 Atomic orbital electron populations 1.23002 0.78798 1.03606 1.01207 1.86059 1.21062 1.27186 1.89014 1.18906 0.92188 0.83974 0.97066 1.21127 0.99602 0.92504 1.09977 1.20838 0.94480 0.96818 0.97779 1.20917 0.93729 0.98030 1.03110 1.19144 0.94212 0.92399 0.95792 1.20808 0.92177 1.04484 0.97251 1.20106 0.82816 0.77868 0.89901 1.90702 1.54659 1.49500 1.46023 1.48328 1.04408 1.71026 1.08901 1.19228 0.95037 0.97450 0.75577 1.21484 1.43428 0.92439 0.98216 0.92346 1.24926 0.95580 0.97206 0.96506 1.69943 1.45014 1.30996 1.07540 0.86505 0.77455 0.85010 0.78827 1.19848 1.21070 1.21006 1.21001 0.90965 0.95654 0.89608 1.22162 0.99511 0.97669 1.02685 1.22142 0.99911 0.96660 1.02793 1.20193 0.91263 0.98076 1.05991 0.92886 0.92730 0.88501 0.85891 0.85971 0.85988 0.88318 0.88537 0.94827 0.94137 0.92906 0.90724 0.91315 0.92306 0.92917 0.92765 0.93302 0.90077 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.31 10.50 -19.44 -0.20 -4.52 16 3 C 0.12 1.82 6.69 -39.22 -0.26 1.55 16 4 C -0.21 -2.80 9.04 -39.43 -0.36 -3.16 16 5 C -0.08 -1.08 10.04 -39.60 -0.40 -1.48 16 6 C -0.14 -2.08 9.70 -39.56 -0.38 -2.47 16 7 C -0.01 -0.24 4.37 -104.65 -0.46 -0.69 16 8 C -0.11 -1.62 4.14 -29.04 -0.12 -1.74 16 9 C 0.51 10.60 7.67 -10.98 -0.08 10.51 16 10 O -0.53 -13.71 15.61 5.56 0.09 -13.63 16 11 N -0.59 -12.40 2.39 -167.47 -0.40 -12.80 16 12 C 0.25 6.37 4.59 -5.19 -0.02 6.34 16 13 C -0.52 -14.39 7.83 -34.44 -0.27 -14.66 16 14 H 0.06 1.63 7.63 -52.49 -0.40 1.23 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 C 0.13 2.12 3.17 -67.94 -0.22 1.90 16 22 C -0.16 -2.35 9.17 37.16 0.34 -2.01 16 23 C -0.16 -2.55 8.47 37.16 0.31 -2.24 16 24 C -0.14 -2.14 9.64 -39.44 -0.38 -2.52 16 25 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 26 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.12 1.27 6.30 -52.49 -0.33 0.94 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.28 7.73 -51.93 -0.40 0.88 16 32 H 0.10 1.21 7.73 -51.93 -0.40 0.81 16 33 H 0.03 0.88 6.43 -51.93 -0.33 0.54 16 34 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 0.97 5.77 -51.93 -0.30 0.67 16 37 H 0.07 1.15 6.66 -51.93 -0.35 0.80 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 43 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -34.17 353.53 -7.45 -41.62 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.57 Total: 0.81 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.40 Total: -7.81 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.34 Total: -38.70 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.12 Total: -18.14 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.17 -7.45 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.611 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds